Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.1G216700 Prunus persica HOM05D006427 ORTHO05D008147 2.8e-76 288.5 143 100.0
MD16G1129900 Malus domestica HOM05D006427 ORTHO05D008147 1.5e-53 213.0 146 78.1
FAN12G4324 Fragaria x ananassa HOM05D006427 ORTHO05D008147 1.7e-44 183.0 146 69.9
FAN07G1740 Fragaria x ananassa HOM05D006427 ORTHO05D008147 1.4e-43 179.9 146 69.2
FAN17G2476 Fragaria x ananassa HOM05D006427 ORTHO05D006987 3.1e-43 178.7 146 68.5
Thecc.02G193800 Theobroma cacao HOM05D006427 ORTHO05D008147 4.5e-42 174.9 144 66.0
Duzib052G1158 Durio zibethinus HOM05D006427 ORTHO05D008147 2.3e-41 172.6 135 67.4
QL03p049638 Quercus lobata HOM05D006427 ORTHO05D008147 2.3e-41 172.6 142 62.7
COL.COLO4_21789 Corchorus olitorius HOM05D006427 ORTHO05D008147 8.6e-41 170.6 145 64.1
Gohir.D04G140100 Gossypium hirsutum HOM05D006427 ORTHO05D008147 9.5e-40 167.2 144 65.3
Dinv19142 Davidia involucrata HOM05D006427 ORTHO05D008147 3.6e-39 165.2 143 62.9
CSS0005682 Camellia sinensis var. sinensis HOM05D006427 ORTHO05D008147 6.1e-39 164.5 143 58.0
ClCG06G001750 Citrullus lanatus HOM05D006427 ORTHO05D006987 1.0e-38 163.7 147 61.2
Duzib132G1024 Durio zibethinus HOM05D006427 ORTHO05D008147 1.8e-38 162.9 144 62.5
Gohir.A04G100800 Gossypium hirsutum HOM05D006427 ORTHO05D008147 3.0e-38 162.2 144 64.6
Gorai.012G125000 Gossypium raimondii HOM05D006427 ORTHO05D008147 3.0e-38 162.2 144 63.9
Atru.chr2.853 Acer truncatum HOM05D006427 ORTHO05D008147 6.8e-38 161.0 142 59.9
MELO3C022354.2 Cucumis melo HOM05D006427 ORTHO05D008147 5.7e-37 157.9 144 59.7
Sed0027051 Sechium edule HOM05D006427 ORTHO05D008147 5.7e-37 157.9 146 60.3
Nn4g22155 Nelumbo nucifera HOM05D006427 ORTHO05D008147 7.5e-37 157.5 146 59.6
CsaV3_6G007780 Cucumis sativus L. HOM05D006427 ORTHO05D008147 9.8e-37 157.1 143 60.8
Manes.09G187300 Manihot esculenta HOM05D006427 ORTHO05D008147 1.7e-36 156.4 140 62.9
GSVIVG01004944001 Vitis vinifera HOM05D006427 ORTHO05D008147 2.8e-36 155.6 142 62.0
CANSAT01G2059 Cannabis sativa HOM05D006427 ORTHO05D008147 3.7e-36 155.2 151 57.6
Nn3g16291 Nelumbo nucifera HOM05D006427 ORTHO05D008147 1.1e-35 153.7 149 59.7
Peaxi162Scf00128g01753 Petunia axillaris HOM05D006427 ORTHO05D008147 1.8e-35 152.9 144 57.6
Rhsim08G0039400 Rhododendron simsii HOM05D006427 ORTHO05D008147 1.8e-35 152.9 124 62.1
TAR371G1278 Trochodendron aralioides HOM05D006427 ORTHO05D006987 3.1e-35 152.1 147 58.5
MBI07_g07335_MAGBIO Magnolia biondii HOM05D006427 ORTHO05D008147 4.1e-35 151.8 113 68.1
vmacro18378 Vaccinium macrocarpon HOM05D006427 ORTHO05D008147 4.1e-35 151.8 124 62.9
Atru.chr10.1283 Acer truncatum HOM05D006427 ORTHO05D008147 1.2e-34 150.2 141 58.2
Potri.001G066400 Populus trichocarpa HOM05D006427 ORTHO05D008147 1.6e-34 149.8 139 63.3
vmacro10314 Vaccinium macrocarpon HOM05D000095 ORTHO05D008147 1.6e-34 149.8 140 55.7
Sabra01G0046200 Salix brachista HOM05D006427 ORTHO05D008147 3.5e-34 148.7 139 63.3
VMungo1383G1825 Vigna mungo HOM05D006427 ORTHO05D008147 3.5e-34 148.7 143 53.8
Eucgr.G01965 Eucalyptus grandis HOM05D006427 ORTHO05D008147 1.0e-33 147.1 105 65.7
GSVIVG01032993001 Vitis vinifera HOM05D006427 ORTHO05D008147 1.0e-33 147.1 145 57.9
Cc11_g15110 Coffea canephora HOM05D006427 ORTHO05D008147 2.3e-33 146.0 140 57.1
Gohir.A11G063600 Gossypium hirsutum HOM05D006427 ORTHO05D008147 2.3e-33 146.0 133 57.1
Glyma.16G049000 Glycine max HOM05D006427 ORTHO05D008147 5.0e-33 144.8 143 54.5
Glyma.19G102400 Glycine max HOM05D006427 ORTHO05D008147 6.6e-33 144.4 143 55.2
Phvul.001G085200 Phaseolus vulgaris HOM05D006427 ORTHO05D008147 6.6e-33 144.4 141 53.9
PGR119G1648 Punica granatum HOM05D006427 ORTHO05D008147 6.6e-33 144.4 155 54.2
Hma1.2p1_1436F.1_g283150 Hydrangea macrophylla HOM05D006427 ORTHO05D008147 8.6e-33 144.1 158 53.2
Thecc.04G047300 Theobroma cacao HOM05D006427 ORTHO05D008147 8.6e-33 144.1 143 53.8
Lj1g0026899 Lotus japonicus HOM05D006427 ORTHO05D008147 1.1e-32 143.7 141 54.6
Gohir.D11G067900 Gossypium hirsutum HOM05D006427 ORTHO05D008147 1.9e-32 142.9 141 56.0
Gorai.007G072700 Gossypium raimondii HOM05D006427 ORTHO05D008147 1.9e-32 142.9 141 56.0
RcHm_v2.0_Chr4g0429011 Rosa chinensis HOM05D006427 ORTHO05D008147 4.3e-32 141.7 121 68.6
arahy.Tifrunner.gnm1.ann1.YL5YHR Arachis hypogaea HOM05D006427 ORTHO05D008147 5.6e-32 141.4 143 52.4
Ca_08136_v3 Cicer arietinum L. HOM05D006427 ORTHO05D008147 7.3e-32 141.0 123 56.1
Ciclev10017113m.g Citrus clementina HOM05D006427 ORTHO05D008147 7.3e-32 141.0 143 52.4
Lj3g0013404 Lotus japonicus HOM05D006427 ORTHO05D008147 7.3e-32 141.0 146 54.1
PSO017G1866 Papaver somniferum HOM05D006427 ORTHO05D008147 9.5e-32 140.6 130 56.9
Psat3g093640 Pisum sativum HOM05D006427 ORTHO05D008147 9.5e-32 140.6 134 52.2
TWI18G0640 Tripterygium wilfordii HOM05D006427 ORTHO05D008147 1.2e-31 140.2 137 56.2
arahy.Tifrunner.gnm1.ann1.BNAN8S Arachis hypogaea HOM05D006427 ORTHO05D008147 1.6e-31 139.8 143 51.7
Ciclev10006190m.g Citrus clementina HOM05D006427 ORTHO05D008147 2.1e-31 139.4 133 57.1
TWI36G1420 Tripterygium wilfordii HOM05D006427 ORTHO05D008147 2.1e-31 139.4 139 56.8
Aqoxy5G03163 Aquilegia oxysepala HOM05D006427 ORTHO05D008147 2.8e-31 139.0 130 58.5
Haze_14945 Corylus avellana HOM05D006427 ORTHO05D008147 2.8e-31 139.0 149 53.0
Potri.003G163402 Populus trichocarpa HOM05D006427 ORTHO05D008147 2.8e-31 139.0 99 69.7
PSO478G1388 Papaver somniferum HOM05D006427 ORTHO05D008147 4.7e-31 138.3 143 54.5
QL02p069636 Quercus lobata HOM05D006427 ORTHO05D008147 4.7e-31 138.3 144 54.2
RhsimUnG0101500 Rhododendron simsii HOM05D006427 ORTHO05D008147 6.1e-31 137.9 79 78.5
CDE06G0025 Ceratophyllum demersum HOM05D006427 ORTHO05D008147 1.0e-30 137.1 130 55.4
CDE02G3326 Ceratophyllum demersum HOM05D006427 ORTHO05D008147 1.4e-30 136.7 142 52.8
Duzib264G1258 Durio zibethinus HOM05D006427 ORTHO05D008147 1.4e-30 136.7 141 51.8
ATR0582G340 Amborella trichopoda HOM05D006427 ORTHO05D008147 3.0e-30 135.6 130 53.1
Medtr7g084000 Medicago truncatula HOM05D006427 ORTHO05D008147 4.0e-30 135.2 136 54.4
Eucgr.G01934 Eucalyptus grandis HOM05D006427 ORTHO05D008147 5.2e-30 134.8 143 53.8
CiPaw.03G002500 Carya illinoinensis HOM05D006427 ORTHO05D008147 3.4e-29 132.1 148 53.4
FvH4_4g22790 Fragaria vesca HOM05D006427 ORTHO05D008147 3.4e-29 132.1 121 66.1
HPP92_021622 Vanilla planifolia HOM05D006427 ORTHO05D008147 4.4e-29 131.7 126 54.0
Manes.04G092801 Manihot esculenta HOM05D006427 ORTHO05D008147 1.4e-27 126.7 150 50.7
Atru.chr12.1402 Acer truncatum HOM05D006427 ORTHO05D008147 2.4e-27 125.9 78 69.2
THA.LOC104805303 Tarenaya hassleriana HOM05D006427 ORTHO05D008147 3.2e-27 125.6 143 52.4
MSTRG.3040 Avicennia marina HOM05D006427 ORTHO05D008147 9.2e-27 124.0 134 50.7
CsaV3_3G027740 Cucumis sativus L. HOM05D006427 ORTHO05D008147 2.0e-26 122.9 143 51.7
A09p03110 Brassica napus HOM05D001087 ORTHO05D001846 6.0e-26 121.3 130 51.5
BraA09t35950Z Brassica rapa HOM05D006427 ORTHO05D003553 6.0e-26 121.3 130 51.5
Cpa.g.sc70.74 Carica papaya HOM05D006427 ORTHO05D008147 6.0e-26 121.3 141 49.6
Carub.0005s0476 Capsella rubella HOM05D006427 ORTHO05D008147 7.8e-26 120.9 144 47.9
BcaC04g23927 Brassica carinata HOM05D006427 ORTHO05D008147 1.0e-25 120.6 144 49.3
C09p03290 Brassica napus HOM05D006427 ORTHO05D008147 1.0e-25 120.6 144 49.3
Thhalv10005093m.g Eutrema salsugineum HOM05D006427 ORTHO05D008147 1.0e-25 120.6 144 46.5
BcaC03g17381 Brassica carinata HOM05D006071 ORTHO05D007462 1.3e-25 120.2 134 46.3
C02p53270 Brassica napus HOM05D006427 ORTHO05D008147 1.7e-25 119.8 134 46.3
PGR042G0015 Punica granatum HOM05D006427 ORTHO05D008147 3.9e-25 118.6 132 49.2
A02p34710 Brassica napus HOM05D006427 ORTHO05D008147 5.0e-25 118.2 143 46.2
Sp2g15860 Schrenkiella parvula HOM05D006427 ORTHO05D008147 1.1e-24 117.1 99 54.5
BcaB07g30216 Brassica carinata HOM05D006427 ORTHO05D008147 3.3e-24 115.5 134 45.5
AT3G26740 Arabidopsis thaliana HOM05D006427 ORTHO05D008147 5.6e-24 114.8 146 45.9
SEGI_30338 Sequoiadendron giganteum HOM05D006427 ORTHO05D008147 1.6e-23 113.2 86 65.1
BraA02t08479Z Brassica rapa HOM05D006427 ORTHO05D008147 2.1e-23 112.8 143 44.1
Duzib187G0815 Durio zibethinus HOM05D006427 ORTHO05D008147 2.8e-23 112.5 79 65.8
AL5G15590 Arabidopsis lyrata HOM05D006427 ORTHO05D008147 8.0e-23 110.9 150 47.3
Os01g0102900 Oryza sativa ssp. japonica HOM05D006427 ORTHO05D008147 1.4e-22 110.2 128 48.4
Sopen09g034980 Solanum pennellii HOM05D006427 ORTHO05D008147 1.8e-22 109.8 80 63.8
MELO3C014813.2 Cucumis melo HOM05D006427 ORTHO05D008147 2.3e-22 109.4 146 47.3
Solyc09g092110.4 Solanum lycopersicum HOM05D006427 ORTHO05D008147 2.3e-22 109.4 80 63.8
PGSC0003DMG400026417 Solanum tuberosum HOM05D006427 ORTHO05D008147 3.1e-22 109.0 82 63.4
ECA234G1075 Erigeron canadensis HOM05D006427 ORTHO05D008147 6.8e-22 107.8 92 56.5
Atru.chr5.1933 Acer truncatum HOM05D006427 ORTHO05D008147 8.9e-22 107.5 76 63.2
CARHR147760 Cardamine hirsuta HOM05D006427 ORTHO05D008147 8.9e-22 107.5 139 53.2
HanXRQChr16g0499601 Helianthus annuus HOM05D006427 ORTHO05D008147 1.5e-21 106.7 130 48.5
SGA_v2.0_scaffold44G16952 Striga asiatica HOM05D006427 ORTHO05D008147 3.4e-21 105.5 112 48.2
CANSAT64G0982 Cannabis sativa HOM05D006427 ORTHO05D008147 1.3e-20 103.6 147 44.2
Atru.chr6.2655 Acer truncatum HOM05D006427 ORTHO05D008147 2.9e-20 102.4 68 64.7
Aa31LG2G5820 Aethionema arabicum HOM05D006427 ORTHO05D008147 2.9e-20 102.4 138 44.2
Migut.F00015 Erythranthe guttata HOM05D006427 ORTHO05D008147 1.1e-19 100.5 123 43.9
CBR_g20422 Chara braunii HOM05D006427 ORTHO05D008147 1.9e-19 99.8 111 45.9
Atru.chr9.488 Acer truncatum HOM05D006427 ORTHO05D008147 9.2e-19 97.4 86 57.0
SalBow4G2027 Salvia bowleyana HOM05D002416 ORTHO05D002554 9.2e-19 97.4 93 48.4
SalBow4G0295 Salvia bowleyana HOM05D002416 ORTHO05D002554 4.6e-18 95.1 126 41.3
Hund04203 Selenicereus undatus HOM05D006427 ORTHO05D008147 2.5e-16 89.4 89 48.3
COL.COLO4_13367 Corchorus olitorius HOM05D006427 ORTHO05D008147 5.6e-16 88.2 79 53.2
Mapoly0029s0093 Marchantia polymorpha HOM05D006427 ORTHO05D008147 7.3e-16 87.8 146 38.4
Aqoxy5G03161 Aquilegia oxysepala HOM05D006427 ORTHO05D008147 2.8e-15 85.9 69 59.4
Zm00001eb138400 Zea mays HOM05D000461 ORTHO05D008147 1.4e-14 83.6 94 44.7
Zm00001eb182180 Zea mays HOM05D006427 ORTHO05D008147 2.3e-14 82.8 81 49.4
Sc03g0004990 Simmondsia chinensis HOM05D006427 ORTHO05D008147 1.7e-12 76.6 122 42.6
Atru.chr1.3017 Acer truncatum HOM05D006427 ORTHO05D008147 2.9e-12 75.9 94 53.2
Potri.014G145500 Populus trichocarpa HOM05D006427 ORTHO05D008147 2.4e-11 72.8 128 42.2
ClCG05G012680 Citrullus lanatus HOM05D006427 ORTHO05D008147 5.4e-11 71.6 119 40.3
Zm00001eb127000 Zea mays HOM05D006427 ORTHO05D008147 6.0e-10 68.2 71 49.3
EL10Ac6g13399 Beta vulgaris HOM05D006427 ORTHO05D008147 7.8e-10 67.8 106 42.5
BolC2t11399H Brassica oleracea HOM05D006427 ORTHO05D008147 3.6e-07 58.9 99 36.4
Zm00001eb390880 Zea mays HOM05D001191 ORTHO05D000979 2.4e-06 56.2 76 39.5


User provided reference genes

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