Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.1G208100 Prunus persica HOM05D006316 ORTHO05D008032 2.1e-106 389.0 197 100.0
MD13G1137100 Malus domestica HOM05D006316 ORTHO05D008032 4.0e-97 358.2 196 90.8
Haze_00749 Corylus avellana HOM05D006316 ORTHO05D008032 8.9e-89 330.5 192 82.8
Glyma.13G117200 Glycine max HOM05D006316 ORTHO05D008032 4.4e-88 328.2 196 80.6
VMungo1215G0091 Vigna mungo HOM05D006316 ORTHO05D008032 4.4e-88 328.2 196 80.1
CiPaw.01G127100 Carya illinoinensis HOM05D006316 ORTHO05D008032 9.8e-88 327.0 196 80.6
Lj4g0011706 Lotus japonicus HOM05D006316 ORTHO05D008032 1.3e-87 326.6 196 78.6
arahy.Tifrunner.gnm1.ann1.NEV66G Arachis hypogaea HOM05D006316 ORTHO05D008032 1.7e-87 326.2 195 80.0
arahy.Tifrunner.gnm1.ann1.ZN6V8N Arachis hypogaea HOM05D006316 ORTHO05D008032 1.7e-87 326.2 195 80.0
Lj6A704G50 Lonicera japonica HOM05D006316 ORTHO05D008032 1.1e-86 323.6 196 78.6
Phvul.003G124500 Phaseolus vulgaris HOM05D006316 ORTHO05D008032 3.2e-86 322.0 196 78.1
CANSAT56G2492 Cannabis sativa HOM05D006316 ORTHO05D008032 7.0e-86 320.9 196 80.6
CSS0049495 Camellia sinensis var. sinensis HOM05D006316 ORTHO05D008032 9.2e-86 320.5 195 78.5
Actinidia24554 Actinidia chinensis HOM05D006316 ORTHO05D008032 1.2e-85 320.1 195 77.9
CSS0037556 Camellia sinensis var. sinensis HOM05D006316 ORTHO05D008032 1.2e-85 320.1 195 77.9
Medtr4g124260 Medicago truncatula HOM05D006316 ORTHO05D008032 1.2e-85 320.1 196 78.1
MELO3C006760.2 Cucumis melo HOM05D006316 ORTHO05D008032 2.1e-85 319.3 196 77.0
GSVIVG01017710001 Vitis vinifera HOM05D006316 ORTHO05D008032 2.1e-85 319.3 195 77.4
CsaV3_3G015610 Cucumis sativus L. HOM05D006316 ORTHO05D008032 2.7e-85 318.9 196 77.6
TWI74G1230 Tripterygium wilfordii HOM05D006316 ORTHO05D008032 2.7e-85 318.9 196 77.6
TPR.G12708 Trifolium pratense HOM05D006316 ORTHO05D008032 4.6e-85 318.2 192 78.1
Eucgr.B02199 Eucalyptus grandis HOM05D006316 ORTHO05D008032 6.0e-85 317.8 196 76.5
Manes.05G122900 Manihot esculenta HOM05D006316 ORTHO05D008032 7.8e-85 317.4 196 77.6
PGR031G3724 Punica granatum HOM05D006316 ORTHO05D008032 7.8e-85 317.4 196 77.6
Cc07_g19930 Coffea canephora HOM05D006316 ORTHO05D008032 1.0e-84 317.0 196 77.6
QL06p014723 Quercus lobata HOM05D006316 ORTHO05D008032 1.7e-84 316.2 195 77.9
Lalb_Chr12g0200491 Lupinus albus HOM05D006316 ORTHO05D008032 2.3e-84 315.8 199 76.4
DCAR_002560 Daucus carota HOM05D006316 ORTHO05D008032 8.6e-84 313.9 192 77.6
FvH4_4g21770 Fragaria vesca HOM05D006316 ORTHO05D008032 8.6e-84 313.9 196 79.1
Ah.07g202850 Amaranthus hybridus HOM05D006316 ORTHO05D008032 1.5e-83 313.2 196 75.5
ClCG05G006940 Citrullus lanatus HOM05D006316 ORTHO05D008032 1.5e-83 313.2 208 73.6
Hund12266 Selenicereus undatus HOM05D006316 ORTHO05D008032 1.5e-83 313.2 196 77.0
EL10Ac3g06220 Beta vulgaris HOM05D006316 ORTHO05D008032 1.9e-83 312.8 196 75.5
Duzib128G0584 Durio zibethinus HOM05D006316 ORTHO05D008032 1.9e-83 312.8 195 76.9
FAN17G2953 Fragaria x ananassa HOM05D006316 ORTHO05D008032 2.5e-83 312.4 196 78.1
Sed0018318 Sechium edule HOM05D006316 ORTHO05D008032 2.5e-83 312.4 196 76.5
RcHm_v2.0_Chr4g0428001 Rosa chinensis HOM05D006316 ORTHO05D008032 3.3e-83 312.0 196 77.6
Nn4g25293 Nelumbo nucifera HOM05D006316 ORTHO05D008032 5.6e-83 311.2 196 77.6
AUR62002525 Chenopodium quinoa HOM05D006316 ORTHO05D008032 9.5e-83 310.5 196 76.0
Migut.B00749 Erythranthe guttata HOM05D006316 ORTHO05D008032 1.2e-82 310.1 196 76.5
Sp3g15720 Schrenkiella parvula HOM05D006316 ORTHO05D008032 1.2e-82 310.1 196 75.0
CAN.G255.2 Capsicum annuum HOM05D006316 ORTHO05D008032 1.6e-82 309.7 195 75.4
Lsat_1_v5_gn_6_117760 Lactuca sativa HOM05D006316 ORTHO05D008032 3.6e-82 308.5 190 75.8
CARHR092900 Cardamine hirsuta HOM05D006316 ORTHO05D008032 6.2e-82 307.8 196 74.0
A05p32260 Brassica napus HOM05D006316 ORTHO05D008032 1.8e-81 306.2 196 75.0
Thhalv10021423m.g Eutrema salsugineum HOM05D006316 ORTHO05D008032 1.8e-81 306.2 196 74.0
vmacro04190 Vaccinium macrocarpon HOM05D006316 ORTHO05D008032 2.3e-81 305.8 216 69.9
Ciclev10005749m.g Citrus clementina HOM05D006316 ORTHO05D008032 4.0e-81 305.1 196 75.0
COL.COLO4_13438 Corchorus olitorius HOM05D006316 ORTHO05D008032 4.0e-81 305.1 192 77.1
Potri.010G004100 Populus trichocarpa HOM05D006316 ORTHO05D008032 4.0e-81 305.1 195 76.4
MSTRG.20325 Avicennia marina HOM05D006316 ORTHO05D008032 5.2e-81 304.7 196 73.0
BraA05t22055Z Brassica rapa HOM05D006316 ORTHO05D008032 5.2e-81 304.7 196 74.5
AT3G17590 Arabidopsis thaliana HOM05D006316 ORTHO05D008032 1.2e-80 303.5 196 73.0
Carub.0003s1730 Capsella rubella HOM05D006316 ORTHO05D008032 1.2e-80 303.5 196 73.5
SalBow7G1663 Salvia bowleyana HOM05D006316 ORTHO05D008032 1.5e-80 303.1 196 74.0
AL3G30660 Arabidopsis lyrata HOM05D006316 ORTHO05D008032 2.0e-80 302.8 196 73.5
Nitab4.5_0004737g0050 Nicotiana tabacum HOM05D006316 ORTHO05D008032 2.0e-80 302.8 194 76.3
Atru.chr4.3188 Acer truncatum HOM05D006316 ORTHO05D008032 2.6e-80 302.4 196 74.0
BcaB06g25834 Brassica carinata HOM05D006316 ORTHO05D008032 4.4e-80 301.6 196 73.5
Nitab4.5_0000051g0260 Nicotiana tabacum HOM05D006316 ORTHO05D008032 4.4e-80 301.6 194 75.8
BcaC05g28772 Brassica carinata HOM05D006316 ORTHO05D008032 5.8e-80 301.2 196 73.5
FAN12G0215 Fragaria x ananassa HOM05D006316 ORTHO05D008032 5.8e-80 301.2 218 71.1
Peaxi162Scf00571g00412 Petunia axillaris HOM05D006316 ORTHO05D008032 7.5e-80 300.8 195 73.8
C05p48790 Brassica napus HOM05D006316 ORTHO05D008032 9.9e-80 300.4 196 73.0
BolC5t33616H Brassica oleracea HOM05D006316 ORTHO05D008032 9.9e-80 300.4 196 73.0
Aa31LG8G4460 Aethionema arabicum HOM05D006316 ORTHO05D008032 1.3e-79 300.1 196 71.4
Gohir.A05G000600 Gossypium hirsutum HOM05D006316 ORTHO05D008032 1.3e-79 300.1 195 73.3
Gohir.D05G000900 Gossypium hirsutum HOM05D006316 ORTHO05D008032 1.7e-79 299.7 195 73.3
Gorai.009G000800 Gossypium raimondii HOM05D006316 ORTHO05D008032 1.7e-79 299.7 195 73.3
TAR365G1184 Trochodendron aralioides HOM05D006316 ORTHO05D008032 1.7e-79 299.7 195 76.9
HanXRQChr05g0148931 Helianthus annuus HOM05D006316 ORTHO05D008032 2.9e-79 298.9 190 73.7
FAN07G2419 Fragaria x ananassa HOM05D006316 ORTHO05D008032 1.9e-78 296.2 227 67.4
ECA246G2315 Erigeron canadensis HOM05D006316 ORTHO05D008032 9.2e-78 293.9 190 74.2
SGA_v2.0_scaffold131G34373 Striga asiatica HOM05D006316 ORTHO05D008032 2.1e-77 292.7 226 65.5
PSO210G4075 Papaver somniferum HOM05D006316 ORTHO05D008032 6.0e-77 291.2 194 72.7
Aqoxy2G02444 Aquilegia oxysepala HOM05D006316 ORTHO05D008032 1.0e-76 290.4 194 72.2
TAR362G1307 Trochodendron aralioides HOM05D006316 ORTHO05D008032 1.3e-76 290.0 191 73.8
PSO761G0163 Papaver somniferum HOM05D006316 ORTHO05D008032 2.3e-76 289.3 194 71.6
Gohir.A09G135800 Gossypium hirsutum HOM05D006316 ORTHO05D008032 3.0e-76 288.9 191 71.7
Solyc11g013400.3 Solanum lycopersicum HOM05D006316 ORTHO05D008032 3.0e-76 288.9 197 71.6
Sopen11g008410 Solanum pennellii HOM05D006316 ORTHO05D008032 5.1e-76 288.1 195 71.8
unitig_578.g15959 Utricularia gibba HOM05D006316 ORTHO05D008032 1.9e-75 286.2 200 69.0
Psat4g020720 Pisum sativum HOM05D006316 ORTHO05D008032 2.1e-74 282.7 196 71.4
Sabra10G0003500 Salix brachista HOM05D006316 ORTHO05D008032 5.2e-73 278.1 236 62.7
Cfa015754 Carpinus fangiana HOM05D006316 ORTHO05D008032 6.8e-73 277.7 164 81.1
ATR0796G033 Amborella trichopoda HOM05D006316 ORTHO05D008032 2.6e-72 275.8 197 67.5
Gohir.D09G137500 Gossypium hirsutum HOM05D006316 ORTHO05D008032 5.8e-72 274.6 214 64.5
CSS0010190 Camellia sinensis var. sinensis HOM05D006316 ORTHO05D008032 2.2e-71 272.7 192 70.8
Sopen11g008420 Solanum pennellii HOM05D006316 ORTHO05D008032 2.7e-69 265.8 196 66.3
Rhsim04G0168500 Rhododendron simsii HOM05D006316 ORTHO05D008032 3.5e-69 265.4 194 67.0
CDE12G0513 Ceratophyllum demersum HOM05D006316 ORTHO05D008032 6.0e-69 264.6 195 63.1
Thecc.03G258800 Theobroma cacao HOM05D006316 ORTHO05D008032 7.8e-69 264.2 196 67.9
THA.LOC104826519 Tarenaya hassleriana HOM05D006316 ORTHO05D008032 4.3e-67 258.5 165 75.2
AUR62023666 Chenopodium quinoa HOM05D006316 ORTHO05D008032 1.3e-66 256.9 161 77.6
Os02g0723700 Oryza sativa ssp. japonica HOM05D006316 ORTHO05D008032 2.2e-63 246.1 191 63.4
Zm00001eb354530 Zea mays HOM05D006316 ORTHO05D008032 1.9e-62 243.0 181 64.1
Rhsim13G0235700 Rhododendron simsii HOM05D006316 ORTHO05D008032 3.2e-62 242.3 194 64.4
Gorai.006G157900 Gossypium raimondii HOM05D006316 ORTHO05D008032 1.5e-59 233.4 186 64.0
SHI09041 Sapria himalayana HOM05D006316 ORTHO05D008032 1.1e-57 227.3 163 65.6
Rhsim04G0168300 Rhododendron simsii HOM05D006316 ORTHO05D008032 4.0e-57 225.3 194 59.8
Dinv32178 Davidia involucrata HOM05D006316 ORTHO05D008032 4.5e-56 221.9 196 60.2
Mapoly0059s0054 Marchantia polymorpha HOM05D006316 ORTHO05D008032 4.5e-56 221.9 196 55.1
SMO358G0571 Selaginella moellendorffii HOM05D006316 ORTHO05D008032 7.4e-51 204.5 189 51.9
Ca_21361_v3 Cicer arietinum L. HOM05D006316 ORTHO05D008032 9.6e-51 204.1 123 80.5
AagrBONN_evm.TU.Sc2ySwM_228.3212 Anthoceros agrestis HOM05D006316 ORTHO05D008032 8.1e-50 201.1 196 50.5
Sc19g0002500 Simmondsia chinensis HOM05D006316 ORTHO05D008032 3.4e-48 195.7 132 70.5
CBR_g38190 Chara braunii HOM05D006316 ORTHO05D008032 4.0e-41 172.2 185 49.2
Glyma.09G159500 Glycine max HOM05D006316 ORTHO05D008032 6.9e-41 171.4 161 58.4
Lj2g0021665 Lotus japonicus HOM05D006316 ORTHO05D008032 2.0e-40 169.9 188 49.5
SEGI_01321 Sequoiadendron giganteum HOM05D006316 ORTHO05D008032 1.3e-39 167.2 123 64.2
HPP92_002633 Vanilla planifolia HOM05D006316 ORTHO05D008032 2.5e-38 162.9 115 64.3
LjContig00575g0004232 Lotus japonicus HOM05D006316 ORTHO05D008032 1.0e-36 157.5 139 56.8
LjContig00576g0014419 Lotus japonicus HOM05D006316 ORTHO05D008032 1.0e-36 157.5 139 56.8
PGSC0003DMG400027786 Solanum tuberosum HOM05D006316 ORTHO05D008032 3.0e-36 156.0 122 64.8
Lj2g0021371 Lotus japonicus HOM05D006316 ORTHO05D008032 1.5e-35 153.7 111 65.8
CSS0015998 Camellia sinensis var. sinensis HOM05D006316 ORTHO05D008032 2.4e-33 146.4 93 76.3
MBI18_g03841_MAGBIO Magnolia biondii HOM05D006046 ORTHO05D007580 4.2e-22 109.0 71 66.2
Cpa.g.c44700 Carica papaya HOM05D006316 ORTHO05D008032 3.6e-21 105.9 55 83.6
DCAR_030416 Daucus carota HOM05D006316 ORTHO05D008032 1.7e-18 97.1 101 58.4
Oeu020629.4 Olea europaea HOM05D002546 ORTHO05D002671 5.0e-15 85.5 65 66.2
Cpa.g.sc146.8 Carica papaya HOM05D006316 ORTHO05D008032 5.5e-06 55.5 41 63.4


User provided reference genes

Program Settings