Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.1G186400 Prunus persica HOM05D008684 ORTHO05D010796 3.4e-298 1027.7 579 100.0
RcHm_v2.0_Chr4g0408211 Rosa chinensis HOM05D008684 ORTHO05D010796 1.7e-220 769.6 573 70.0
MD00G1189300 Malus domestica HOM05D008684 ORTHO05D010796 2.1e-215 752.7 580 69.5
FAN07G0233 Fragaria x ananassa HOM05D008684 ORTHO05D010796 1.2e-194 683.7 576 66.7
FvH4_4g11480 Fragaria vesca HOM05D008684 ORTHO05D010796 1.6e-186 656.8 576 66.0
QL10p048169 Quercus lobata HOM05D008684 ORTHO05D010796 3.4e-181 639.0 573 68.2
ClCG07G015540 Citrullus lanatus HOM05D008684 ORTHO05D010796 1.3e-175 620.5 550 64.2
Sabra17G0020700 Salix brachista HOM05D008684 ORTHO05D010796 6.3e-175 618.2 577 63.3
CANSAT78G0097 Cannabis sativa HOM05D008684 ORTHO05D010796 8.2e-175 617.8 577 58.6
Sed0026458 Sechium edule HOM05D008684 ORTHO05D010796 1.5e-173 613.6 576 56.9
Duzib093G0470 Durio zibethinus HOM05D008684 ORTHO05D010796 2.0e-173 613.2 581 57.5
Potri.017G033000 Populus trichocarpa HOM05D008684 ORTHO05D010796 4.2e-171 605.5 577 58.2
Hma1.2p1_0754F.1_g213130 Hydrangea macrophylla HOM05D008684 ORTHO05D010796 1.2e-170 604.0 585 63.1
Thecc.05G003500 Theobroma cacao HOM05D008684 ORTHO05D010796 2.3e-169 599.7 560 57.1
Haze_00738 Corylus avellana HOM05D008684 ORTHO05D010796 1.1e-166 590.9 568 62.5
Lalb_Chr10g0091291 Lupinus albus HOM05D008684 ORTHO05D010796 5.3e-158 562.0 567 54.1
Lj1g0020630 Lotus japonicus HOM05D008684 ORTHO05D010796 1.3e-156 557.4 480 58.8
CsaV3_4G003170 Cucumis sativus L. HOM05D008684 ORTHO05D010796 8.5e-156 554.7 547 60.1
PGR083G2638 Punica granatum HOM05D008684 ORTHO05D010796 2.1e-154 550.1 574 53.0
Atru.chr3.1557 Acer truncatum HOM05D008684 ORTHO05D010796 4.7e-154 548.9 462 62.8
Atru.chr3.1578 Acer truncatum HOM05D008684 ORTHO05D010796 4.7e-154 548.9 462 62.6
Psat3g098480 Pisum sativum HOM05D008684 ORTHO05D010796 3.0e-153 546.2 546 53.1
Ca_08075_v3 Cicer arietinum L. HOM05D008684 ORTHO05D010796 4.0e-153 545.8 550 52.7
Glyma.18G295400 Glycine max HOM05D008684 ORTHO05D010796 2.2e-151 540.0 514 56.4
Medtr7g082160 Medicago truncatula HOM05D008684 ORTHO05D010796 2.8e-151 539.7 565 51.7
Phvul.008G006600 Phaseolus vulgaris HOM05D008684 ORTHO05D010796 2.4e-150 536.6 525 54.7
TAR365G1218 Trochodendron aralioides HOM05D008684 ORTHO05D010796 3.5e-149 532.7 511 59.9
Lj6C59T5 Lonicera japonica HOM05D008684 ORTHO05D010796 2.0e-144 516.9 574 50.9
TPR.G29077 Trifolium pratense HOM05D008684 ORTHO05D010796 4.9e-143 512.3 578 50.5
TWI63G1367 Tripterygium wilfordii HOM05D008684 ORTHO05D010796 1.8e-142 510.4 576 56.4
Aqoxy3G03751 Aquilegia oxysepala HOM05D008684 ORTHO05D010796 6.1e-138 495.4 562 51.6
VMungo0331G1396 Vigna mungo HOM05D008684 ORTHO05D010796 3.3e-131 473.0 495 53.7
MBI11_g35025_MAGBIO Magnolia biondii HOM05D008684 ORTHO05D010796 4.9e-127 459.1 550 49.5
FAN17G0645 Fragaria x ananassa HOM05D008684 ORTHO05D010796 9.2e-118 428.3 367 65.1
CDE09G0511 Ceratophyllum demersum HOM05D000554 ORTHO05D010796 1.1e-115 421.4 562 48.8
MELO3C017730.2 Cucumis melo HOM05D008684 ORTHO05D010796 1.7e-108 397.5 564 45.4
QL10p047749 Quercus lobata HOM05D008684 ORTHO05D010796 2.9e-95 353.6 372 52.7
ATR0743G006 Amborella trichopoda HOM05D008684 ORTHO05D010796 3.5e-93 346.7 432 52.3
Dinv22714 Davidia involucrata HOM05D008684 ORTHO05D010796 1.3e-90 338.2 313 55.6
Cfa015766 Carpinus fangiana HOM05D008684 ORTHO05D010796 1.0e-84 318.5 316 63.9
SEGI_15733 Sequoiadendron giganteum HOM05D008684 ORTHO05D010796 1.7e-63 248.1 450 46.0
QL10p047785 Quercus lobata HOM05D008684 ORTHO05D010796 1.8e-44 184.9 144 66.0
FAN17G0451 Fragaria x ananassa HOM05D008684 ORTHO05D010796 5.0e-39 166.8 108 69.4
QL10p047770 Quercus lobata HOM05D008684 ORTHO05D010796 1.5e-38 165.2 161 55.3
Nitab4.5_0003441g0070 Nicotiana tabacum HOM05D005362 ORTHO05D006895 1.0e-15 89.4 391 25.1
Sc10g0009660 Simmondsia chinensis HOM05D005362 ORTHO05D006895 1.1e-14 85.9 338 25.7
TAR622G0387 Trochodendron aralioides HOM05D007202 ORTHO05D009125 1.5e-14 85.5 419 24.8
AUR62029951 Chenopodium quinoa HOM05D005362 ORTHO05D006895 2.5e-14 84.7 342 24.3
PGSC0003DMG400024629 Solanum tuberosum HOM05D005362 ORTHO05D006895 8.0e-13 79.7 390 24.1
Thhalv10004006m.g Eutrema salsugineum HOM05D005362 ORTHO05D006895 5.2e-12 77.0 334 23.4
Cc11_g04710 Coffea canephora HOM05D005362 ORTHO05D006895 6.8e-12 76.6 339 23.6
Peaxi162Scf00201g00422 Petunia axillaris HOM05D005362 ORTHO05D006895 2.0e-11 75.1 391 23.0
SEGI_24584 Sequoiadendron giganteum HOM05D000424 ORTHO05D000355 4.9e-10 70.5 177 29.9
Sc14g0003020 Simmondsia chinensis HOM05D006174 ORTHO05D007987 6.4e-10 70.1 111 36.0
Aa31LG1G15500 Aethionema arabicum HOM05D000424 ORTHO05D000355 1.4e-09 68.9 200 29.5
SEGI_34053 Sequoiadendron giganteum HOM05D006174 ORTHO05D007987 1.4e-09 68.9 192 28.6
CDE11G1123 Ceratophyllum demersum HOM05D000073 ORTHO05D000033 3.2e-09 67.8 226 28.3
Sopen01g002840 Solanum pennellii HOM05D006596 ORTHO05D008497 3.2e-09 67.8 224 27.7
Solyc01g006850.1 Solanum lycopersicum HOM05D006596 ORTHO05D008497 4.1e-09 67.4 224 27.7
Sopen03g034000 Solanum pennellii HOM05D005362 ORTHO05D006895 7.0e-09 66.6 390 22.8
SEGI_34039 Sequoiadendron giganteum HOM05D000424 ORTHO05D000355 9.2e-09 66.2 158 29.7
Nn1g07956 Nelumbo nucifera HOM05D000424 ORTHO05D000355 1.2e-08 65.9 154 27.3
MBI03_g29283_MAGBIO Magnolia biondii HOM05D006174 ORTHO05D007987 1.6e-08 65.5 189 28.0
QL02p012919 Quercus lobata HOM05D000424 ORTHO05D000355 1.6e-08 65.5 156 26.9
AT3G22670 Arabidopsis thaliana HOM05D000424 ORTHO05D000355 2.0e-08 65.1 196 27.0
CSS0033496 Camellia sinensis var. sinensis HOM05D000424 ORTHO05D000355 3.5e-08 64.3 156 28.2
MD00G1030400 Malus domestica HOM05D006174 ORTHO05D007987 3.5e-08 64.3 111 34.2
CSS0000084 Camellia sinensis var. sinensis HOM05D000424 ORTHO05D000355 4.6e-08 63.9 177 27.1
Cfa018561 Carpinus fangiana HOM05D006174 ORTHO05D007987 4.6e-08 63.9 203 27.1
SEGI_33548 Sequoiadendron giganteum HOM05D006218 ORTHO05D007338 6.0e-08 63.5 171 29.2
TWI34G0515 Tripterygium wilfordii HOM05D006174 ORTHO05D007987 7.8e-08 63.2 109 34.9
Atru.ctg752_3.82 Acer truncatum HOM05D002453 ORTHO05D008746 1.0e-07 62.8 158 32.9
Cfa008759 Carpinus fangiana HOM05D007202 ORTHO05D009125 1.0e-07 62.8 235 25.1
AUR62002247 Chenopodium quinoa HOM05D006556 ORTHO05D008146 1.0e-07 62.8 300 24.7
CsaV3_5G026160 Cucumis sativus L. HOM05D006174 ORTHO05D007987 1.0e-07 62.8 109 33.9
SEGI_15364 Sequoiadendron giganteum HOM05D007173 ORTHO05D009151 1.0e-07 62.8 233 23.6
Aqoxy1G01656 Aquilegia oxysepala HOM05D018609 ORTHO05D019561 1.3e-07 62.4 252 22.2
BcaC06g33209 Brassica carinata HOM05D005362 ORTHO05D006895 1.3e-07 62.4 268 25.0
MELO3C025482.2 Cucumis melo HOM05D006174 ORTHO05D007987 1.3e-07 62.4 111 34.2
CDE05G1475 Ceratophyllum demersum HOM05D000424 ORTHO05D000355 1.7e-07 62.0 210 24.8
QL07p026858 Quercus lobata HOM05D006596 ORTHO05D008497 1.7e-07 62.0 272 25.0
FAN27G1425 Fragaria x ananassa HOM05D006174 ORTHO05D007987 2.3e-07 61.6 111 31.5
Psat6g233440 Pisum sativum HOM05D007202 ORTHO05D009125 2.3e-07 61.6 294 24.1
ClCG11G015920 Citrullus lanatus HOM05D006174 ORTHO05D007987 3.0e-07 61.2 111 34.2
ECA232G2008 Erigeron canadensis HOM05D006174 ORTHO05D007987 3.0e-07 61.2 109 30.3
ATR0580G328 Amborella trichopoda HOM05D000424 ORTHO05D000355 3.9e-07 60.8 198 26.8
Oeu001538.1 Olea europaea HOM05D006174 ORTHO05D007987 3.9e-07 60.8 199 27.6
Peaxi162Scf00154g00034 Petunia axillaris HOM05D000162 ORTHO05D000090 3.9e-07 60.8 230 24.8
CsaV3_5G014410 Cucumis sativus L. HOM05D007202 ORTHO05D009125 5.0e-07 60.5 214 24.8
FAN15G2863 Fragaria x ananassa HOM05D006174 ORTHO05D007987 5.0e-07 60.5 111 30.6
FAN24G3105 Fragaria x ananassa HOM05D006174 ORTHO05D007987 5.0e-07 60.5 111 30.6
Lj5C60T11 Lonicera japonica HOM05D006749 ORTHO05D008352 5.0e-07 60.5 161 24.8
PGSC0003DMG400006019 Solanum tuberosum HOM05D006174 ORTHO05D007987 5.0e-07 60.5 107 30.8
CSS0004844 Camellia sinensis var. sinensis HOM05D000424 ORTHO05D000355 6.6e-07 60.1 221 26.7
CSS0038368 Camellia sinensis var. sinensis HOM05D000424 ORTHO05D000355 6.6e-07 60.1 221 26.7
Nitab4.5_0000111g0120 Nicotiana tabacum HOM05D006174 ORTHO05D007987 6.6e-07 60.1 107 32.7
Peaxi162Scf00681g00018 Petunia axillaris HOM05D007202 ORTHO05D009125 6.6e-07 60.1 160 28.8
Sopen08g010060 Solanum pennellii HOM05D006174 ORTHO05D007987 6.6e-07 60.1 107 30.8
Cpa.g.sc64.130 Carica papaya HOM05D006174 ORTHO05D007987 8.6e-07 59.7 113 31.0
MBI11_g22994_MAGBIO Magnolia biondii HOM05D000424 ORTHO05D000355 8.6e-07 59.7 122 31.1
PGSC0003DMG400032545 Solanum tuberosum HOM05D007202 ORTHO05D009125 8.6e-07 59.7 301 25.6
HPP92_009614 Vanilla planifolia HOM05D000424 ORTHO05D000355 8.6e-07 59.7 238 25.6
MSTRG.22731 Avicennia marina HOM05D000424 ORTHO05D000355 1.1e-06 59.3 260 26.2
CiPaw.07G143800 Carya illinoinensis HOM05D000424 ORTHO05D000355 1.1e-06 59.3 153 26.8
FvH4_2g27550 Fragaria vesca HOM05D006174 ORTHO05D007987 1.1e-06 59.3 111 29.7
Rhsim01G0212900 Rhododendron simsii HOM05D006174 ORTHO05D007987 1.1e-06 59.3 109 30.3
Eucgr.H03429 Eucalyptus grandis HOM05D000424 ORTHO05D000355 1.5e-06 58.9 205 25.4
FAN20G1065 Fragaria x ananassa HOM05D006174 ORTHO05D007987 1.5e-06 58.9 111 30.6
Nitab4.5_0005499g0020 Nicotiana tabacum HOM05D006174 ORTHO05D007987 1.5e-06 58.9 107 31.8
QL05p028340 Quercus lobata HOM05D000424 ORTHO05D000355 1.5e-06 58.9 202 28.7
CSS0004959 Camellia sinensis var. sinensis HOM05D007937 ORTHO05D010000 1.9e-06 58.5 253 23.3
Dinv44566 Davidia involucrata HOM05D000424 ORTHO05D000355 1.9e-06 58.5 180 27.2
Hma1.2p1_0169F.1_g074750 Hydrangea macrophylla HOM05D000424 ORTHO05D000355 1.9e-06 58.5 240 27.1
Potri.004G102700 Populus trichocarpa HOM05D000424 ORTHO05D000355 1.9e-06 58.5 243 25.1
C09p70390 Brassica napus HOM05D006596 ORTHO05D008497 2.5e-06 58.2 358 21.8
Lsat_1_v5_gn_4_117540 Lactuca sativa HOM05D006174 ORTHO05D007987 2.5e-06 58.2 129 29.5
Lalb_Chr02g0145411 Lupinus albus HOM05D000424 ORTHO05D000355 2.5e-06 58.2 226 28.3
Lalb_Chr02g0145461 Lupinus albus HOM05D000424 ORTHO05D000355 2.5e-06 58.2 226 28.3
Medtr1g055295 Medicago truncatula HOM05D006596 ORTHO05D008497 2.5e-06 58.2 310 23.5
PSO782G4392 Papaver somniferum HOM05D007202 ORTHO05D009125 2.5e-06 58.2 268 23.9
Peaxi162Scf00310g00046 Petunia axillaris HOM05D006174 ORTHO05D007987 2.5e-06 58.2 109 33.9
Sabra04G0077900 Salix brachista HOM05D000424 ORTHO05D000355 2.5e-06 58.2 245 25.7
RcHm_v2.0_Chr4g0420811 Rosa chinensis HOM05D006174 ORTHO05D007987 3.3e-06 57.8 110 30.0
Solyc08g029150.3 Solanum lycopersicum HOM05D006174 ORTHO05D007987 3.3e-06 57.8 107 29.9
VMungo1215G0023 Vigna mungo HOM05D000424 ORTHO05D000355 3.3e-06 57.8 205 27.3
Rhsim08G0086500 Rhododendron simsii HOM05D002007 ORTHO05D000355 4.3e-06 57.4 354 22.3
ATR0665G502 Amborella trichopoda HOM05D000424 ORTHO05D008586 5.6e-06 57.0 209 27.8
AL2G37610 Arabidopsis lyrata HOM05D006174 ORTHO05D007987 5.6e-06 57.0 109 32.1
CDE02G1325 Ceratophyllum demersum HOM05D001551 ORTHO05D005859 5.6e-06 57.0 163 28.2
Solyc04g009220.2 Solanum lycopersicum HOM05D007202 ORTHO05D009125 5.6e-06 57.0 283 26.1
Thecc.06G069800 Theobroma cacao HOM05D000424 ORTHO05D000355 5.6e-06 57.0 225 26.2
TAR336G0003 Trochodendron aralioides HOM05D006174 ORTHO05D007987 5.6e-06 57.0 132 28.8
Lj7P456T17 Lonicera japonica HOM05D000424 ORTHO05D000355 7.3e-06 56.6 304 25.0
SalBow2G2495 Salvia bowleyana HOM05D006174 ORTHO05D007987 7.3e-06 56.6 109 31.2
SHI21567 Sapria himalayana HOM05D006174 ORTHO05D007987 7.3e-06 56.6 108 32.4
vmacro17639 Vaccinium macrocarpon HOM05D006174 ORTHO05D007987 7.3e-06 56.6 109 29.4
Ah.11g048060 Amaranthus hybridus HOM05D005362 ORTHO05D006895 9.5e-06 56.2 110 34.5
Aqoxy2G03436 Aquilegia oxysepala HOM05D000424 ORTHO05D000355 9.5e-06 56.2 214 22.0
AT1G77405 Arabidopsis thaliana HOM05D006174 ORTHO05D007987 9.5e-06 56.2 109 31.2
BcaB05g25044 Brassica carinata HOM05D006174 ORTHO05D007987 9.5e-06 56.2 110 29.1
Hma1.2p1_1572F.1_g291500 Hydrangea macrophylla HOM05D000424 ORTHO05D000355 9.5e-06 56.2 214 26.6


User provided reference genes

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