Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.1G181600 Prunus persica HOM05D004349 ORTHO05D005097 7.5e-89 330.5 167 100.0
Prupe.6G266300 Prunus persica HOM05D004349 ORTHO05D005097 2.4e-79 298.9 166 94.0
Prupe.7G086000 Prunus persica HOM05D004349 ORTHO05D005097 9.0e-74 280.4 166 88.6
RcHm_v2.0_Chr4g0406251 Rosa chinensis HOM05D004349 ORTHO05D005097 1.5e-68 263.1 166 82.5
MD14G1049500 Malus domestica HOM05D004349 ORTHO05D005097 4.3e-68 261.5 166 82.5
MD12G1050700 Malus domestica HOM05D004349 ORTHO05D005097 1.6e-67 259.6 166 81.9
FvH4_6g21430 Fragaria vesca HOM05D004349 ORTHO05D005097 6.2e-67 257.7 166 80.7
FAN05G3233 Fragaria x ananassa HOM05D004349 ORTHO05D005097 6.2e-67 257.7 166 80.7
FAN02G1450 Fragaria x ananassa HOM05D004349 ORTHO05D005097 1.1e-66 256.9 166 80.7
FAN05G0412 Fragaria x ananassa HOM05D004349 ORTHO05D005097 2.4e-66 255.8 166 80.1
Ciclev10012936m.g Citrus clementina HOM05D004349 ORTHO05D005097 5.3e-66 254.6 156 84.0
COL.COLO4_29437 Corchorus olitorius HOM05D004349 ORTHO05D005097 9.0e-66 253.8 156 82.7
FAN09G4703 Fragaria x ananassa HOM05D004349 ORTHO05D005097 1.2e-65 253.4 172 77.9
FAN14G0676 Fragaria x ananassa HOM05D004349 ORTHO05D005097 1.5e-65 253.1 172 77.9
FAN14G3215 Fragaria x ananassa HOM05D004349 ORTHO05D005097 1.5e-65 253.1 172 77.9
Gohir.D11G331900 Gossypium hirsutum HOM05D004349 ORTHO05D005097 1.5e-65 253.1 156 82.1
Gorai.007G362800 Gossypium raimondii HOM05D004349 ORTHO05D005097 1.5e-65 253.1 156 82.1
PGSC0003DMG401009863 Solanum tuberosum HOM05D004349 ORTHO05D005097 3.4e-65 251.9 162 78.4
Duzib093G0127 Durio zibethinus HOM05D004349 ORTHO05D005097 7.6e-65 250.8 156 82.1
Cfa020113 Carpinus fangiana HOM05D004349 ORTHO05D005097 1.3e-64 250.0 156 82.7
Haze_20078 Corylus avellana HOM05D004349 ORTHO05D005097 1.3e-64 250.0 156 82.7
CiPaw.09G026100 Carya illinoinensis HOM05D004349 ORTHO05D005097 1.7e-64 249.6 156 80.8
ECA240G0294 Erigeron canadensis HOM05D004349 ORTHO05D005097 1.7e-64 249.6 156 82.1
Dinv25025 Davidia involucrata HOM05D004349 ORTHO05D005097 2.2e-64 249.2 156 81.4
EL10Ac2g02766 Beta vulgaris HOM05D004349 ORTHO05D005097 2.9e-64 248.8 156 80.8
QL11p005722 Quercus lobata HOM05D004349 ORTHO05D005097 8.4e-64 247.3 156 80.8
Solyc04g081430.3 Solanum lycopersicum HOM05D004349 ORTHO05D005097 1.4e-63 246.5 156 79.5
Sopen04g035040 Solanum pennellii HOM05D004349 ORTHO05D005097 1.4e-63 246.5 156 79.5
Atru.chr8.1222 Acer truncatum HOM05D004349 ORTHO05D005097 1.9e-63 246.1 156 79.5
ClCG10G017820 Citrullus lanatus HOM05D004349 ORTHO05D005097 3.2e-63 245.4 156 80.8
Potri.016G062800 Populus trichocarpa HOM05D004349 ORTHO05D005097 3.2e-63 245.4 155 80.0
TWI74G1533 Tripterygium wilfordii HOM05D004349 ORTHO05D005097 5.4e-63 244.6 156 80.1
Nitab4.5_0001874g0080 Nicotiana tabacum HOM05D004349 ORTHO05D005097 7.1e-63 244.2 156 78.8
MELO3C009592.2 Cucumis melo HOM05D004349 ORTHO05D005097 9.3e-63 243.8 156 79.5
CsaV3_7G005510 Cucumis sativus L. HOM05D004349 ORTHO05D005097 9.3e-63 243.8 156 79.5
DCAR_018883 Daucus carota HOM05D004349 ORTHO05D005097 9.3e-63 243.8 158 78.5
Peaxi162Scf00463g00127 Petunia axillaris HOM05D004349 ORTHO05D005097 2.1e-62 242.7 156 78.8
GSVIVG01033427001 Vitis vinifera HOM05D004349 ORTHO05D005097 2.1e-62 242.7 156 80.1
Cc09_g02100 Coffea canephora HOM05D004349 ORTHO05D005097 2.7e-62 242.3 156 79.5
Sed0001935 Sechium edule HOM05D004349 ORTHO05D005097 2.7e-62 242.3 156 78.8
Sed0019694 Sechium edule HOM05D004349 ORTHO05D005097 2.7e-62 242.3 156 79.5
Actinidia01590 Actinidia chinensis HOM05D004349 ORTHO05D005097 3.5e-62 241.9 156 78.8
Nn2g15821 Nelumbo nucifera HOM05D004349 ORTHO05D005097 3.5e-62 241.9 156 80.1
Aqoxy1G00443 Aquilegia oxysepala HOM05D004349 ORTHO05D005097 6.0e-62 241.1 156 78.8
Nitab4.5_0000571g0040 Nicotiana tabacum HOM05D004349 ORTHO05D005097 6.0e-62 241.1 168 75.0
QL05p072253 Quercus lobata HOM05D004349 ORTHO05D005097 7.9e-62 240.7 156 78.2
Manes.08G039900 Manihot esculenta HOM05D004349 ORTHO05D005097 1.0e-61 240.4 156 77.6
TWI77G0543 Tripterygium wilfordii HOM05D004349 ORTHO05D005097 3.9e-61 238.4 156 78.8
Hma1.2p1_0516F.1_g170550 Hydrangea macrophylla HOM05D004349 ORTHO05D005097 5.1e-61 238.0 156 77.6
PSO528G0119 Papaver somniferum HOM05D004349 ORTHO05D005097 5.1e-61 238.0 156 78.2
Phvul.010G156700 Phaseolus vulgaris HOM05D004349 ORTHO05D005097 5.1e-61 238.0 156 76.9
arahy.Tifrunner.gnm1.ann1.9IE653 Arachis hypogaea HOM05D004349 ORTHO05D005097 6.7e-61 237.7 157 76.4
Ah.13g075520 Amaranthus hybridus HOM05D004349 ORTHO05D005097 8.7e-61 237.3 156 77.6
CANSAT54G2032 Cannabis sativa HOM05D004349 ORTHO05D005097 8.7e-61 237.3 156 78.8
CSS0044984 Camellia sinensis var. sinensis HOM05D004349 ORTHO05D005097 1.1e-60 236.9 156 77.6
TPR.G11586 Trifolium pratense HOM05D004349 ORTHO05D005097 1.1e-60 236.9 155 78.1
arahy.Tifrunner.gnm1.ann1.FMT65J Arachis hypogaea HOM05D004349 ORTHO05D005097 1.9e-60 236.1 157 75.2
Rhsim04G0092200 Rhododendron simsii HOM05D004349 ORTHO05D005097 1.9e-60 236.1 156 76.9
Rhsim04G0092400 Rhododendron simsii HOM05D004349 ORTHO05D005097 1.9e-60 236.1 156 76.9
PSO170G4263 Papaver somniferum HOM05D004349 ORTHO05D005097 2.5e-60 235.7 156 77.6
Psat5g280400 Pisum sativum HOM05D004349 ORTHO05D005097 2.5e-60 235.7 156 76.9
MSTRG.10496 Avicennia marina HOM05D004349 ORTHO05D005097 3.3e-60 235.3 156 77.6
Cpa.g.sc85.16 Carica papaya HOM05D004349 ORTHO05D005097 9.6e-60 233.8 156 77.6
Migut.L01584 Erythranthe guttata HOM05D004349 ORTHO05D005097 9.6e-60 233.8 155 76.8
Medtr6g471120 Medicago truncatula HOM05D004349 ORTHO05D005097 9.6e-60 233.8 156 76.3
Ca_01401_v3 Cicer arietinum L. HOM05D004349 ORTHO05D005097 1.3e-59 233.4 156 74.4
Glyma.07G029300 Glycine max HOM05D004349 ORTHO05D005097 1.6e-59 233.0 156 75.0
THA.LOC104821832 Tarenaya hassleriana HOM05D004349 ORTHO05D005097 1.6e-59 233.0 156 75.6
Medtr2g094720 Medicago truncatula HOM05D004349 ORTHO05D005097 2.8e-59 232.3 156 75.6
Glyma.08G213500 Glycine max HOM05D004349 ORTHO05D005097 3.7e-59 231.9 156 74.4
SGA_v2.0_scaffold21G09532 Striga asiatica HOM05D004349 ORTHO05D005097 6.2e-59 231.1 156 75.0
TAR623G1044 Trochodendron aralioides HOM05D004349 ORTHO05D005097 8.1e-59 230.7 156 78.2
HPP92_013495 Vanilla planifolia HOM05D004349 ORTHO05D005097 8.1e-59 230.7 156 77.6
ECA248G3305 Erigeron canadensis HOM05D004349 ORTHO05D005097 1.1e-58 230.3 156 75.6
LjContig00564g0000037 Lotus japonicus HOM05D004349 ORTHO05D005097 1.4e-58 229.9 156 75.6
CDE02G3593 Ceratophyllum demersum HOM05D000001 ORTHO05D000424 2.4e-58 229.2 156 75.6
Aa31LG1G21860 Aethionema arabicum HOM05D004349 ORTHO05D005097 3.1e-58 228.8 156 74.4
AL6G12510 Arabidopsis lyrata HOM05D004349 ORTHO05D005097 3.1e-58 228.8 156 74.4
Sp6g39510 Schrenkiella parvula HOM05D004349 ORTHO05D005097 3.1e-58 228.8 156 74.4
Thhalv10021663m.g Eutrema salsugineum HOM05D004349 ORTHO05D005097 4.0e-58 228.4 156 73.7
BcaC03g13019 Brassica carinata HOM05D004349 ORTHO05D005097 6.9e-58 227.6 156 74.4
HPP92_026048 Vanilla planifolia HOM05D004349 ORTHO05D005097 6.9e-58 227.6 156 76.9
BolC2t06089H Brassica oleracea HOM05D004349 ORTHO05D005097 1.5e-57 226.5 156 73.7
Thhalv10014853m.g Eutrema salsugineum HOM05D004349 ORTHO05D005097 2.0e-57 226.1 156 73.7
Prupe.1G300700 Prunus persica HOM05D004349 ORTHO05D005097 2.6e-57 225.7 150 81.3
Thecc.05G180500 Theobroma cacao HOM05D004349 ORTHO05D005097 3.4e-57 225.3 139 82.0
MBI18_g03872_MAGBIO Magnolia biondii HOM05D004349 ORTHO05D005097 4.5e-57 224.9 156 75.6
AT5G03220 Arabidopsis thaliana HOM05D004349 ORTHO05D005097 5.8e-57 224.6 156 73.1
Prupe.3G021700 Prunus persica HOM05D004349 ORTHO05D005097 5.8e-57 224.6 150 80.7
AL6G12940 Arabidopsis lyrata HOM05D004349 ORTHO05D005097 7.6e-57 224.2 156 73.1
Prupe.1G547000 Prunus persica HOM05D004349 ORTHO05D005097 7.6e-57 224.2 142 85.2
Sabra06G0151800 Salix brachista HOM05D004349 ORTHO05D005097 7.6e-57 224.2 138 82.6
Prupe.7G024200 Prunus persica HOM05D004349 ORTHO05D005097 9.9e-57 223.8 142 84.5
Carub.0006s0201 Capsella rubella HOM05D004349 ORTHO05D005097 1.7e-56 223.0 156 72.4
arahy.Tifrunner.gnm1.ann1.2RRL5Q Arachis hypogaea HOM05D004349 ORTHO05D005097 2.2e-56 222.6 185 64.9
AT5G03500 Arabidopsis thaliana HOM05D004349 ORTHO05D005097 3.8e-56 221.9 153 73.9
CARHR210130 Cardamine hirsuta HOM05D004349 ORTHO05D005097 3.8e-56 221.9 156 72.4
Hund26707 Selenicereus undatus HOM05D004349 ORTHO05D005097 3.8e-56 221.9 194 63.4
Lj2C360G6 Lonicera japonica HOM05D004349 ORTHO05D005097 6.4e-56 221.1 139 82.0
TPR.G23269 Trifolium pratense HOM05D004349 ORTHO05D005097 6.4e-56 221.1 153 72.5
TAR623G0936 Trochodendron aralioides HOM05D004349 ORTHO05D005097 8.4e-56 220.7 139 80.6
Eucgr.A02508 Eucalyptus grandis HOM05D004349 ORTHO05D005097 1.4e-55 219.9 139 80.6
Os04g0661800 Oryza sativa ssp. japonica HOM05D004349 ORTHO05D005097 1.9e-55 219.5 152 75.7
CARHR040500 Cardamine hirsuta HOM05D004349 ORTHO05D005097 2.4e-55 219.2 156 69.9
Gohir.A11G314900 Gossypium hirsutum HOM05D004349 ORTHO05D005097 2.4e-55 219.2 133 83.5
Lalb_Chr23g0277751 Lupinus albus HOM05D004349 ORTHO05D005097 2.4e-55 219.2 156 70.5
Carub.0006s2456 Capsella rubella HOM05D004349 ORTHO05D005097 3.2e-55 218.8 153 73.9
Prupe.1G035300 Prunus persica HOM05D004349 ORTHO05D005097 3.2e-55 218.8 144 81.9
SHI30021 Sapria himalayana HOM05D004349 ORTHO05D005097 3.2e-55 218.8 160 69.4
VMungo0331G0313 Vigna mungo HOM05D004349 ORTHO05D005097 4.2e-55 218.4 138 79.7
AUR62015286 Chenopodium quinoa HOM05D004349 ORTHO05D005097 5.5e-55 218.0 139 79.9
Rhsim10G0130900 Rhododendron simsii HOM05D004349 ORTHO05D005097 3.5e-54 215.3 202 59.9
Lsat_1_v5_gn_1_58740 Lactuca sativa HOM05D004349 ORTHO05D005097 6.0e-54 214.5 161 71.4
Lalb_Chr19g0125421 Lupinus albus HOM05D004349 ORTHO05D005097 6.0e-54 214.5 156 67.3
SEGI_10501 Sequoiadendron giganteum HOM05D004349 ORTHO05D005097 6.0e-54 214.5 156 69.2
unitig_37.g12649 Utricularia gibba HOM05D006346 ORTHO05D007910 3.0e-53 212.2 156 70.5
HanXRQChr01g0024771 Helianthus annuus HOM05D004349 ORTHO05D005097 5.1e-53 211.5 132 83.3
ATR0580G353 Amborella trichopoda HOM05D004349 ORTHO05D005097 6.7e-53 211.1 138 78.3
Zm00001eb432780 Zea mays HOM05D004349 ORTHO05D005097 1.1e-52 210.3 161 68.3
Prupe.8G249100 Prunus persica HOM05D004349 ORTHO05D005097 4.3e-52 208.4 135 83.0
vmacro17893 Vaccinium macrocarpon HOM05D004349 ORTHO05D005097 5.6e-52 208.0 216 55.1
BcaNung06685 Brassica carinata HOM05D004349 ORTHO05D005097 7.4e-52 207.6 156 69.2
HanXRQChr03g0090511 Helianthus annuus HOM05D004349 ORTHO05D005097 7.4e-52 207.6 132 81.8
BraA02t04750Z Brassica rapa HOM05D004349 ORTHO05D005097 1.6e-51 206.5 140 74.3
C02p00910 Brassica napus HOM05D004349 ORTHO05D005097 3.7e-51 205.3 156 67.9
AL3G38450 Arabidopsis lyrata HOM05D004349 ORTHO05D005097 1.8e-50 203.0 142 72.5
Zm00001eb067450 Zea mays HOM05D004349 ORTHO05D005097 1.8e-50 203.0 152 69.7
Mapoly0052s0099 Marchantia polymorpha HOM05D004349 ORTHO05D005097 1.5e-49 199.9 156 63.5
A10p32710 Brassica napus HOM05D004349 ORTHO05D005097 2.6e-49 199.1 138 71.7
BolC9t60086H Brassica oleracea HOM05D004349 ORTHO05D005097 1.0e-48 197.2 172 62.8
BraA10t45308Z Brassica rapa HOM05D004349 ORTHO05D005097 4.9e-48 194.9 138 71.7
Dinv24030 Davidia involucrata HOM05D004349 ORTHO05D005097 7.1e-47 191.0 132 76.5
SMO340G0091 Selaginella moellendorffii HOM05D004349 ORTHO05D005097 2.1e-46 189.5 157 61.8
PGR004G2245 Punica granatum HOM05D004349 ORTHO05D005097 1.1e-44 183.7 116 76.7
CBR_g46752 Chara braunii HOM05D004349 ORTHO05D005097 2.2e-43 179.5 144 61.1
ATR0564G039 Amborella trichopoda HOM05D004349 ORTHO05D005097 4.8e-43 178.3 155 65.2
CAN.G311.28 Capsicum annuum HOM05D004349 ORTHO05D005097 8.2e-43 177.6 114 77.2
SMO358G0681 Selaginella moellendorffii HOM05D004349 ORTHO05D005097 1.8e-42 176.4 145 62.1
arahy.Tifrunner.gnm1.ann1.UX8DIM Arachis hypogaea HOM05D004349 ORTHO05D005097 2.4e-42 176.0 157 63.7
Sc13g0002530 Simmondsia chinensis HOM05D004349 ORTHO05D005097 5.9e-41 171.4 114 76.3
FAN05G0350 Fragaria x ananassa HOM05D004349 ORTHO05D005097 2.5e-39 166.0 104 84.6
RcHm_v2.0_Chr3g0478001 Rosa chinensis HOM05D004349 ORTHO05D005097 9.3e-39 164.1 117 76.1
CSS0033717 Camellia sinensis var. sinensis HOM05D004349 ORTHO05D005097 2.1e-38 162.9 125 69.6
Prupe.2G085900 Prunus persica HOM05D004349 ORTHO05D005097 6.1e-38 161.4 101 85.1
C09p73550 Brassica napus HOM05D004349 ORTHO05D005097 1.1e-36 157.1 115 71.3
Sabra16G0064800 Salix brachista HOM05D004349 ORTHO05D005097 7.7e-33 144.4 87 86.2
Pp3c5_20850 Physcomitrium patens HOM05D004349 ORTHO05D005097 4.4e-28 128.6 123 57.7
AagrBONN_evm.TU.Sc2ySwM_117.2767 Anthoceros agrestis HOM05D004349 ORTHO05D005097 1.8e-26 123.2 86 69.8
AagrBONN_evm.TU.Sc2ySwM_362.1623 Anthoceros agrestis HOM05D004349 ORTHO05D005097 3.1e-26 122.5 91 69.2
Rhsim04G0093300 Rhododendron simsii HOM05D004349 ORTHO05D005097 4.1e-26 122.1 73 87.7
RcHm_v2.0_Chr3g0478061 Rosa chinensis HOM05D004349 ORTHO05D005097 8.5e-24 114.4 114 56.1
CARHR099790 Cardamine hirsuta HOM05D004349 ORTHO05D005097 1.1e-23 114.0 79 72.2
Oeu057599.1 Olea europaea HOM05D004349 ORTHO05D005097 1.9e-23 113.2 80 67.5
CARHR251030 Cardamine hirsuta HOM05D004349 ORTHO05D005097 2.0e-20 103.2 72 70.8
CARHR218030 Cardamine hirsuta HOM05D004349 ORTHO05D005097 1.2e-17 94.0 64 71.9
CARHR258920 Cardamine hirsuta HOM05D004349 ORTHO05D005097 2.2e-16 89.7 65 70.8
RcHm_v2.0_Chr3g0478211 Rosa chinensis HOM05D004349 ORTHO05D005097 6.1e-14 81.6 49 85.7
RcHm_v2.0_Chr3g0478341 Rosa chinensis HOM05D004349 ORTHO05D005097 6.1e-14 81.6 49 85.7
PRCOL_00002553 Prasinoderma coloniale HOM05D004349 ORTHO05D005097 1.0e-13 80.9 137 35.8
RcHm_v2.0_Chr3g0478621 Rosa chinensis HOM05D004349 ORTHO05D005097 2.0e-12 76.6 121 47.9
MCO10G402 Micromonas commoda HOM05D004349 ORTHO05D005097 2.2e-11 73.2 135 32.6
CSS0042444 Camellia sinensis var. sinensis HOM05D004349 ORTHO05D005097 4.8e-11 72.0 55 65.5
AL6G12900 Arabidopsis lyrata HOM05D004349 ORTHO05D005097 9.1e-10 67.8 47 63.8
Cre01.g062902 Chlamydomonas reinhardtii HOM05D004349 ORTHO05D005097 5.0e-08 62.0 102 37.3


User provided reference genes

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