Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.1G178600 Prunus persica HOM05D005013 ORTHO05D006005 0.0e+00 1125.9 685 100.0
Prupe.3G059100 Prunus persica HOM05D005013 ORTHO05D006005 1.2e-310 1069.3 710 91.4
MD17G1184000 Malus domestica HOM05D005013 ORTHO05D006005 3.0e-285 984.9 712 82.3
MD09G1202900 Malus domestica HOM05D005013 ORTHO05D006005 6.7e-285 983.8 712 82.3
FAN14G4508 Fragaria x ananassa HOM05D005013 ORTHO05D006005 1.3e-259 899.8 702 77.9
FvH4_6g32381 Fragaria vesca HOM05D005013 ORTHO05D006005 1.7e-259 899.4 702 77.9
RcHm_v2.0_Chr2g0140531 Rosa chinensis HOM05D005013 ORTHO05D006005 4.1e-258 894.8 706 76.9
FAN02G3590 Fragaria x ananassa HOM05D005013 ORTHO05D006005 4.5e-257 891.3 703 76.4
FAN05G1466 Fragaria x ananassa HOM05D005013 ORTHO05D006005 2.5e-255 885.6 704 77.8
FAN09G0199 Fragaria x ananassa HOM05D005013 ORTHO05D006005 3.3e-255 885.2 693 78.2
QL05p020046 Quercus lobata HOM05D005013 ORTHO05D006005 3.1e-229 798.9 601 77.4
CANSAT56G0983 Cannabis sativa HOM05D005013 ORTHO05D006005 9.2e-226 787.3 536 75.9
CiPaw.02G145800 Carya illinoinensis HOM05D005013 ORTHO05D006005 1.9e-223 779.6 605 75.5
Haze_15847 Corylus avellana HOM05D005013 ORTHO05D006005 1.9e-218 763.1 608 74.5
Duzib235G0505 Durio zibethinus HOM05D005013 ORTHO05D006005 1.2e-217 760.4 604 73.7
Duzib192G0488 Durio zibethinus HOM05D005013 ORTHO05D006005 1.5e-212 743.4 531 75.3
Phvul.010G145300 Phaseolus vulgaris HOM05D005013 ORTHO05D006005 3.4e-212 742.3 518 75.9
Thecc.06G100000 Theobroma cacao HOM05D005013 ORTHO05D006005 3.4e-212 742.3 605 74.4
COL.COLO4_30512 Corchorus olitorius HOM05D005013 ORTHO05D006005 1.3e-211 740.3 589 74.2
Glyma.07G015500 Glycine max HOM05D005013 ORTHO05D006005 2.2e-211 739.6 519 76.1
VMungo0331G0134 Vigna mungo HOM05D005013 ORTHO05D006005 2.2e-211 739.6 518 75.9
ClCG09G000200 Citrullus lanatus HOM05D005013 ORTHO05D006005 1.4e-210 736.9 541 72.1
Glyma.08G201000 Glycine max HOM05D005013 ORTHO05D006005 1.4e-210 736.9 517 75.6
Lalb_Chr22g0351551 Lupinus albus HOM05D005013 ORTHO05D006005 1.4e-210 736.9 529 73.2
MELO3C024438.2 Cucumis melo HOM05D005013 ORTHO05D006005 7.1e-210 734.6 538 72.7
Gohir.D09G081300 Gossypium hirsutum HOM05D005013 ORTHO05D006005 7.1e-210 734.6 698 70.1
Gorai.006G096900 Gossypium raimondii HOM05D005013 ORTHO05D006005 1.6e-209 733.4 531 74.6
Gohir.A09G081200 Gossypium hirsutum HOM05D005013 ORTHO05D006005 3.5e-209 732.3 531 74.4
Gorai.003G061700 Gossypium raimondii HOM05D005013 ORTHO05D006005 5.6e-207 724.9 520 74.0
TAR633G2449 Trochodendron aralioides HOM05D005013 ORTHO05D006005 6.9e-205 718.0 604 71.7
CsaV3_7G035280 Cucumis sativus L. HOM05D005013 ORTHO05D006005 1.2e-204 717.2 687 63.5
Gohir.A02G117400 Gossypium hirsutum HOM05D005013 ORTHO05D006005 4.5e-204 715.3 520 72.1
Sed0027607 Sechium edule HOM05D005013 ORTHO05D006005 7.6e-204 714.5 535 71.6
arahy.Tifrunner.gnm1.ann1.1M6YYJ Arachis hypogaea HOM05D005013 ORTHO05D006005 4.9e-203 711.8 508 76.6
arahy.Tifrunner.gnm1.ann1.R367CR Arachis hypogaea HOM05D005013 ORTHO05D006005 8.4e-203 711.1 508 76.6
Ciclev10025066m.g Citrus clementina HOM05D005013 ORTHO05D006005 1.1e-202 710.7 533 72.8
Lj3g0013010 Lotus japonicus HOM05D005013 ORTHO05D006005 7.1e-202 708.0 528 75.0
Lalb_Chr04g0262971 Lupinus albus HOM05D005013 ORTHO05D006005 8.7e-200 701.0 531 71.9
CSS0033602 Camellia sinensis var. sinensis HOM05D005013 ORTHO05D006005 1.8e-197 693.3 609 69.3
Psat2g107800 Pisum sativum HOM05D005013 ORTHO05D006005 1.5e-196 690.3 521 72.7
arahy.Tifrunner.gnm1.ann1.VUMD9N Arachis hypogaea HOM05D005013 ORTHO05D006005 2.9e-195 686.0 645 65.4
Sabra01G0151600 Salix brachista HOM05D005013 ORTHO05D006005 9.3e-194 681.0 511 70.6
Hma1.2p1_1232F.1_g268910 Hydrangea macrophylla HOM05D005013 ORTHO05D006005 1.2e-193 680.6 514 73.2
vmacro18853 Vaccinium macrocarpon HOM05D005013 ORTHO05D006005 1.2e-193 680.6 501 73.3
TPR.G26938 Trifolium pratense HOM05D005013 ORTHO05D006005 3.5e-193 679.1 510 72.5
Gohir.D03G057900 Gossypium hirsutum HOM05D005013 ORTHO05D006005 6.0e-193 678.3 472 76.1
PGR102G0015 Punica granatum HOM05D005013 ORTHO05D006005 1.8e-192 676.8 515 71.3
Manes.11G033651 Manihot esculenta HOM05D005013 ORTHO05D006005 6.7e-192 674.9 513 72.1
TWI12G0488 Tripterygium wilfordii HOM05D005013 ORTHO05D006005 1.5e-191 673.7 535 68.2
Medtr8g014460 Medicago truncatula HOM05D005013 ORTHO05D006005 2.5e-191 672.9 449 75.9
Potri.001G190000 Populus trichocarpa HOM05D005013 ORTHO05D006005 1.3e-190 670.6 528 67.8
Manes.04G134200 Manihot esculenta HOM05D005013 ORTHO05D006005 1.6e-190 670.2 515 68.5
Atru.chr1.3523 Acer truncatum HOM05D005013 ORTHO05D006005 3.4e-188 662.5 545 68.8
Sopen03g039850 Solanum pennellii HOM05D005013 ORTHO05D006005 2.2e-187 659.8 516 68.8
Eucgr.F03078 Eucalyptus grandis HOM05D005013 ORTHO05D006005 8.5e-187 657.9 530 68.3
Solyc03g121020.3 Solanum lycopersicum HOM05D005013 ORTHO05D006005 1.9e-186 656.8 516 68.6
Potri.003G048900 Populus trichocarpa HOM05D005013 ORTHO05D006005 3.2e-186 656.0 531 68.2
CAN.G1143.13 Capsicum annuum HOM05D005013 ORTHO05D006005 5.5e-186 655.2 582 68.7
Cc04_g02560 Coffea canephora HOM05D005013 ORTHO05D006005 9.4e-186 654.4 537 67.8
TWI75G0851 Tripterygium wilfordii HOM05D005013 ORTHO05D006005 9.4e-186 654.4 535 68.2
Aa31LG4G90 Aethionema arabicum HOM05D005013 ORTHO05D006005 7.9e-185 651.4 524 69.1
Ca_23262_v3 Cicer arietinum L. HOM05D005013 ORTHO05D006005 6.3e-182 641.7 402 79.9
Nn2g11173 Nelumbo nucifera HOM05D005013 ORTHO05D006005 6.9e-181 638.3 539 67.3
Nitab4.5_0006467g0030 Nicotiana tabacum HOM05D005013 ORTHO05D006005 2.9e-179 632.9 546 65.2
Rhsim08G0227500 Rhododendron simsii HOM05D005013 ORTHO05D006005 1.2e-177 627.5 519 69.2
Ca_23271_v3 Cicer arietinum L. HOM05D005013 ORTHO05D006005 1.4e-176 624.0 449 72.2
Actinidia32097 Actinidia chinensis HOM05D005013 ORTHO05D006005 2.6e-175 619.8 598 63.2
Sp5g36040 Schrenkiella parvula HOM05D005013 ORTHO05D006005 3.3e-175 619.4 524 66.6
Carub.0002s2777 Capsella rubella HOM05D005013 ORTHO05D006005 9.7e-175 617.8 501 69.5
Lj9C512T10 Lonicera japonica HOM05D005013 ORTHO05D006005 9.7e-175 617.8 756 56.2
Aqoxy2G02285 Aquilegia oxysepala HOM05D005013 ORTHO05D006005 2.8e-174 616.3 523 65.0
Peaxi162Scf00038g01028 Petunia axillaris HOM05D005013 ORTHO05D006005 1.1e-173 614.4 490 68.6
PSO513G0173 Papaver somniferum HOM05D005013 ORTHO05D006005 1.4e-173 614.0 637 60.9
GSVIVG01016983001 Vitis vinifera HOM05D005013 ORTHO05D006005 1.4e-173 614.0 422 73.9
DCAR_016188 Daucus carota HOM05D005013 ORTHO05D006005 1.8e-173 613.6 518 63.9
PSO339G6278 Papaver somniferum HOM05D005013 ORTHO05D006005 7.0e-173 611.7 522 63.8
THA.LOC104819998 Tarenaya hassleriana HOM05D005013 ORTHO05D006005 1.5e-172 610.5 419 73.3
HanXRQChr02g0032251 Helianthus annuus HOM05D005013 ORTHO05D006005 1.7e-171 607.1 514 65.4
MBI04_g36817_MAGBIO Magnolia biondii HOM05D005013 ORTHO05D006005 8.5e-171 604.7 538 64.5
TAR623G0538 Trochodendron aralioides HOM05D005013 ORTHO05D006005 1.9e-170 603.6 393 76.8
Duzib160G0376 Durio zibethinus HOM05D005013 ORTHO05D006005 1.2e-169 600.9 699 61.4
SalBow7G4596 Salvia bowleyana HOM05D005013 ORTHO05D006005 1.0e-168 597.8 502 64.1
MSTRG.4752 Avicennia marina HOM05D005013 ORTHO05D006005 1.4e-168 597.4 497 65.0
Thhalv10018561m.g Eutrema salsugineum HOM05D005013 ORTHO05D006005 2.0e-167 593.6 434 70.7
AT1G79730 Arabidopsis thaliana HOM05D005013 ORTHO05D006005 1.8e-165 587.0 525 65.1
Nitab4.5_0006902g0030 Nicotiana tabacum HOM05D005013 ORTHO05D006005 4.1e-165 585.9 451 68.1
Hund07600 Selenicereus undatus HOM05D005013 ORTHO05D006005 4.5e-164 582.4 531 61.6
Lsat_1_v5_gn_1_36740 Lactuca sativa HOM05D005013 ORTHO05D006005 1.7e-163 580.5 540 65.2
Oeu026781.2 Olea europaea HOM05D005013 ORTHO05D006005 1.1e-162 577.8 598 57.7
ECA247G2560 Erigeron canadensis HOM05D005013 ORTHO05D006005 4.0e-160 569.3 542 60.5
Lsat_1_v5_gn_4_97461 Lactuca sativa HOM05D005013 ORTHO05D006005 3.3e-159 566.2 508 64.0
SGA_v2.0_scaffold4G02026 Striga asiatica HOM05D005013 ORTHO05D006005 7.5e-159 565.1 458 67.5
unitig_52.g17097 Utricularia gibba HOM05D005013 ORTHO05D006005 7.5e-159 565.1 514 58.6
A10p33120 Brassica napus HOM05D005013 ORTHO05D006005 5.3e-157 558.9 436 65.6
BcaC06g31994 Brassica carinata HOM05D005013 ORTHO05D006005 2.7e-156 556.6 433 66.1
Ah.01g005800 Amaranthus hybridus HOM05D005013 ORTHO05D006005 3.2e-154 549.7 540 56.1
arahy.Tifrunner.gnm1.ann1.YYV7TY Arachis hypogaea HOM05D005013 ORTHO05D006005 3.2e-154 549.7 523 59.8
EL10Ac9g21206 Beta vulgaris HOM05D005013 ORTHO05D006005 1.2e-153 547.7 531 58.4
Dinv30436 Davidia involucrata HOM05D005013 ORTHO05D006005 6.1e-153 545.4 584 64.9
BolC9t60139H Brassica oleracea HOM05D005013 ORTHO05D006005 2.3e-152 543.5 447 63.8
AUR62022205 Chenopodium quinoa HOM05D005013 ORTHO05D006005 4.0e-152 542.7 507 59.4
ATR0661G470 Amborella trichopoda HOM05D005013 ORTHO05D006005 1.3e-150 537.7 447 64.0
C09p74080 Brassica napus HOM05D005013 ORTHO05D006005 2.2e-150 537.0 371 72.0
AUR62031914 Chenopodium quinoa HOM05D005013 ORTHO05D006005 3.7e-150 536.2 507 60.9
HanXRQChr09g0276241 Helianthus annuus HOM05D005013 ORTHO05D006005 2.4e-149 533.5 493 60.6
CAN.G1143.12 Capsicum annuum HOM05D005013 ORTHO05D006005 5.0e-147 525.8 469 61.2
AL2G41830 Arabidopsis lyrata HOM05D005013 ORTHO05D006005 8.0e-145 518.5 502 61.2
Os08g0157100 Oryza sativa ssp. japonica HOM05D005013 ORTHO05D006005 6.8e-144 515.4 454 60.6
Zm00001eb415930 Zea mays HOM05D005013 ORTHO05D006005 1.6e-137 494.2 406 62.1
CDE12G0264 Ceratophyllum demersum HOM05D005013 ORTHO05D006005 1.3e-126 458.0 440 58.0
Migut.D00991 Erythranthe guttata HOM05D005013 ORTHO05D006005 3.7e-126 456.4 378 63.2
Sc15g0001880 Simmondsia chinensis HOM05D005013 ORTHO05D006005 3.2e-125 453.4 426 66.9
Zm00001eb172540 Zea mays HOM05D005013 ORTHO05D006005 9.9e-119 431.8 326 66.3
Mapoly0123s0029 Marchantia polymorpha HOM05D005013 ORTHO05D006005 3.2e-109 400.2 487 47.8
Actinidia21716 Actinidia chinensis HOM05D005013 ORTHO05D006005 2.7e-108 397.1 350 62.0
BcaNung02135 Brassica carinata HOM05D005013 ORTHO05D006005 2.7e-108 397.1 348 60.9
AagrBONN_evm.TU.Sc2ySwM_117.3356 Anthoceros agrestis HOM05D005013 ORTHO05D006005 1.3e-105 388.3 419 51.1
SMO116G0383 Selaginella moellendorffii HOM05D005013 ORTHO05D006005 4.8e-105 386.3 404 52.0
TAR369G0672 Trochodendron aralioides HOM05D005013 ORTHO05D006005 3.8e-102 376.7 440 50.9
Pp3c1_7460 Physcomitrium patens HOM05D005013 ORTHO05D006005 6.4e-102 375.9 413 48.9
AL2G41840 Arabidopsis lyrata HOM05D005013 ORTHO05D006005 4.2e-93 346.7 213 80.8
HPP92_015196 Vanilla planifolia HOM05D005013 ORTHO05D006005 3.3e-90 337.0 311 65.6
SHI11095 Sapria himalayana HOM05D005013 ORTHO05D006005 9.6e-90 335.5 481 47.2
Cpa.g.sc109.1 Carica papaya HOM05D005013 ORTHO05D006005 1.2e-87 328.6 275 69.8
Ah.01g022080 Amaranthus hybridus HOM05D005013 ORTHO05D006005 2.0e-79 301.2 496 41.9
CBR_g8033 Chara braunii HOM05D005013 ORTHO05D006005 1.7e-78 298.1 369 46.6
CDE06G0689 Ceratophyllum demersum HOM05D005013 ORTHO05D006005 3.8e-78 297.0 401 46.9
Cpa.g.sc109.3 Carica papaya HOM05D005013 ORTHO05D006005 1.0e-75 288.9 210 69.0
BraA10t45345Z Brassica rapa HOM05D005013 ORTHO05D006005 1.2e-71 275.4 189 73.0
HPP92_015185 Vanilla planifolia HOM05D005013 ORTHO05D006005 3.3e-50 204.1 192 54.7
Lj5C53T3 Lonicera japonica HOM05D005013 ORTHO05D006005 1.2e-47 195.7 204 53.4
Oeu023599.1 Olea europaea HOM05D005013 ORTHO05D006005 1.3e-41 175.6 171 55.6
CARHR074670 Cardamine hirsuta HOM05D005013 ORTHO05D006005 4.8e-41 173.7 189 60.8
Migut.I00890 Erythranthe guttata HOM05D005013 ORTHO05D006005 1.1e-40 172.6 521 29.8
Psat4g155920 Pisum sativum HOM05D001854 ORTHO05D001800 2.0e-34 151.8 125 63.2
Psat4g155880 Pisum sativum HOM05D001854 ORTHO05D001800 4.4e-34 150.6 125 62.4
Lsat_1_v5_gn_6_46660 Lactuca sativa HOM05D005013 ORTHO05D006005 4.7e-28 130.6 95 66.3
Cre12.g520250 Chlamydomonas reinhardtii HOM05D005013 ORTHO05D006005 2.3e-27 128.3 448 26.6
Nn2g13410 Nelumbo nucifera HOM05D005013 ORTHO05D006005 3.0e-27 127.9 120 59.2
TAR560G0009 Trochodendron aralioides HOM05D005013 ORTHO05D006005 1.4e-24 119.0 347 56.8
MCO01G084 Micromonas commoda HOM05D005013 ORTHO05D006005 1.2e-23 115.9 354 27.7
Oeu023601.1 Olea europaea HOM05D005013 ORTHO05D006005 1.2e-23 115.9 120 54.2
CAN.G907.1 Capsicum annuum HOM05D005013 ORTHO05D006005 4.7e-20 104.0 87 62.1
Oeu026780.1 Olea europaea HOM05D005013 ORTHO05D006005 2.6e-18 98.2 108 68.5
AL2G25330 Arabidopsis lyrata HOM05D005013 ORTHO05D006005 3.2e-16 91.3 143 43.4
vmacro04324 Vaccinium macrocarpon HOM05D005013 ORTHO05D006005 6.0e-15 87.0 123 42.3
CBR_g48652 Chara braunii HOM05D005013 ORTHO05D006005 1.3e-14 85.9 164 37.2
Lsat_1_v5_gn_1_14160 Lactuca sativa HOM05D005013 ORTHO05D006005 3.3e-13 81.3 106 45.3
SEGI_39677 Sequoiadendron giganteum HOM05D050634 ORTHO05D006005 7.5e-10 70.1 113 38.1
CAN.G1143.11 Capsicum annuum HOM05D005013 ORTHO05D115532 2.9e-09 68.2 53 62.3
CAN.G1143.9 Capsicum annuum HOM05D000602 ORTHO05D001147 1.9e-08 65.5 120 34.2
Lsat_1_v5_gn_5_133740 Lactuca sativa HOM05D000912 ORTHO05D021086 7.8e-07 60.1 54 61.1


User provided reference genes

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