Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.1G108400 Prunus persica HOM05D002376 ORTHO05D004654 2.0e-212 742.3 398 100.0
Prupe.6G045800 Prunus persica HOM05D002376 ORTHO05D004654 1.0e-112 411.0 381 61.2
Prupe.6G043600 Prunus persica HOM05D002376 ORTHO05D004654 1.2e-105 387.5 380 59.2
MD11G1056400 Malus domestica HOM05D002376 ORTHO05D004654 8.3e-94 348.2 371 58.5
MD03G1055200 Malus domestica HOM05D002376 ORTHO05D004654 9.5e-90 334.7 373 52.5
Prupe.1G106000 Prunus persica HOM05D002376 ORTHO05D004654 1.1e-80 304.7 234 68.8
RcHm_v2.0_Chr5g0072441 Rosa chinensis HOM05D002376 ORTHO05D004654 5.4e-77 292.4 379 47.2
FvH4_3g40230 Fragaria vesca HOM05D002376 ORTHO05D004654 7.1e-77 292.0 383 46.7
FAN11G3581 Fragaria x ananassa HOM05D002376 ORTHO05D004654 7.1e-77 292.0 383 46.7
FAN16G2868 Fragaria x ananassa HOM05D002376 ORTHO05D004654 7.1e-77 292.0 383 46.7
FAN25G0776 Fragaria x ananassa HOM05D002376 ORTHO05D004654 1.1e-74 284.6 396 44.9
FAN21G3096 Fragaria x ananassa HOM05D002376 ORTHO05D004654 4.3e-74 282.7 383 46.5
Prupe.1G103300 Prunus persica HOM05D002376 ORTHO05D004654 2.4e-61 240.4 151 80.8
QL01p025227 Quercus lobata HOM05D002376 ORTHO05D004654 1.4e-56 224.6 374 40.4
Haze_24447 Corylus avellana HOM05D002376 ORTHO05D004654 5.8e-55 219.2 354 43.2
Dinv28716 Davidia involucrata HOM05D002376 ORTHO05D004654 3.8e-54 216.5 342 42.7
Cfa011807 Carpinus fangiana HOM05D002376 ORTHO05D004654 1.3e-51 208.0 260 48.1
CANSAT54G2949 Cannabis sativa HOM05D002376 ORTHO05D004654 1.1e-50 204.9 373 39.4
CSS0048295 Camellia sinensis var. sinensis HOM05D002376 ORTHO05D004654 1.3e-43 181.4 331 39.3
Hma1.2p1_1637F.1_g294890 Hydrangea macrophylla HOM05D002376 ORTHO05D004654 1.1e-42 178.3 397 35.5
Glyma.18G054900 Glycine max HOM05D002376 ORTHO05D004654 9.7e-42 175.3 331 36.9
Ca_15029_v3 Cicer arietinum L. HOM05D002376 ORTHO05D004654 1.3e-41 174.9 326 38.0
TAR369G0569 Trochodendron aralioides HOM05D002376 ORTHO05D004654 3.7e-41 173.3 220 48.6
CSS0050025 Camellia sinensis var. sinensis HOM05D002376 ORTHO05D004654 1.1e-40 171.8 324 38.3
Cpa.g.sc2.324 Carica papaya HOM05D002376 ORTHO05D004654 1.1e-40 171.8 341 36.4
Atru.chr1.2538 Acer truncatum HOM05D002376 ORTHO05D004654 2.4e-40 170.6 322 39.1
ClCG03G000240 Citrullus lanatus HOM05D002376 ORTHO05D004654 5.3e-40 169.5 206 45.1
PGSC0003DMG400020864 Solanum tuberosum HOM05D002376 ORTHO05D004654 1.5e-39 167.9 203 45.3
TAR623G0587 Trochodendron aralioides HOM05D002376 ORTHO05D004654 2.6e-39 167.2 326 38.7
Solyc09g031790.4 Solanum lycopersicum HOM05D002376 ORTHO05D004654 4.5e-39 166.4 169 52.1
Sopen09g014780 Solanum pennellii HOM05D002376 ORTHO05D004654 4.5e-39 166.4 187 47.6
Sabra13G0125800 Salix brachista HOM05D002376 ORTHO05D004654 1.0e-38 165.2 198 47.5
Potri.019G127600 Populus trichocarpa HOM05D002376 ORTHO05D004654 1.3e-38 164.9 207 45.4
Eucgr.J01841 Eucalyptus grandis HOM05D002376 ORTHO05D004654 2.2e-38 164.1 319 36.4
PSO339G0904 Papaver somniferum HOM05D002376 ORTHO05D004654 2.2e-38 164.1 177 51.4
Ciclev10001469m.g Citrus clementina HOM05D002376 ORTHO05D004654 2.9e-38 163.7 340 36.8
Actinidia23178 Actinidia chinensis HOM05D002376 ORTHO05D004654 3.8e-38 163.3 356 36.0
Sed0022472 Sechium edule HOM05D002376 ORTHO05D004654 5.0e-38 162.9 204 44.6
TWI79G1034 Tripterygium wilfordii HOM05D002376 ORTHO05D004654 5.0e-38 162.9 194 49.5
Gohir.1Z049629 Gossypium hirsutum HOM05D002376 ORTHO05D004654 6.5e-38 162.5 192 49.5
Gohir.D04G000035 Gossypium hirsutum HOM05D002376 ORTHO05D004654 6.5e-38 162.5 192 49.5
Gorai.012G000400 Gossypium raimondii HOM05D002376 ORTHO05D004654 6.5e-38 162.5 192 49.5
GSVIVG01024586001 Vitis vinifera HOM05D002376 ORTHO05D004654 6.5e-38 162.5 210 46.7
Phvul.006G076300 Phaseolus vulgaris HOM05D002376 ORTHO05D004654 8.5e-38 162.2 344 36.3
Medtr3g466410 Medicago truncatula HOM05D002376 ORTHO05D004654 1.4e-37 161.4 179 49.7
Nitab4.5_0002601g0080 Nicotiana tabacum HOM05D002376 ORTHO05D004654 1.9e-37 161.0 155 53.5
MELO3C020503.2 Cucumis melo HOM05D002376 ORTHO05D004654 2.5e-37 160.6 173 48.0
Manes.18G137600 Manihot esculenta HOM05D002376 ORTHO05D004654 2.5e-37 160.6 221 43.4
PGR119G0696 Punica granatum HOM05D002376 ORTHO05D004654 2.5e-37 160.6 208 45.2
Lalb_Chr15g0085961 Lupinus albus HOM05D002376 ORTHO05D004654 4.2e-37 159.8 337 36.8
Gohir.A13G235800 Gossypium hirsutum HOM05D002376 ORTHO05D004654 5.5e-37 159.5 192 49.5
Nitab4.5_0000734g0130 Nicotiana tabacum HOM05D002376 ORTHO05D004654 5.5e-37 159.5 330 36.1
SGA_v2.0_scaffold6G03299 Striga asiatica HOM05D002376 ORTHO05D004654 7.2e-37 159.1 201 46.3
HPP92_022854 Vanilla planifolia HOM05D003671 ORTHO05D004654 9.4e-37 158.7 171 49.7
Gorai.013G272400 Gossypium raimondii HOM05D002376 ORTHO05D004654 1.2e-36 158.3 192 49.5
Potri.013G155900 Populus trichocarpa HOM05D002376 ORTHO05D004654 1.6e-36 157.9 199 47.2
Thecc.09G361600 Theobroma cacao HOM05D002376 ORTHO05D004654 1.6e-36 157.9 205 47.3
Peaxi162Scf01078g00415 Petunia axillaris HOM05D002376 ORTHO05D004654 2.1e-36 157.5 198 44.9
MSTRG.21249 Avicennia marina HOM05D002376 ORTHO05D004654 2.7e-36 157.1 186 46.8
Duzib168G1857 Durio zibethinus HOM05D002376 ORTHO05D004654 2.7e-36 157.1 308 37.0
PSO384G2467 Papaver somniferum HOM05D002376 ORTHO05D004654 2.7e-36 157.1 197 48.7
TPR.G24962 Trifolium pratense HOM05D002376 ORTHO05D004654 2.7e-36 157.1 194 45.9
arahy.Tifrunner.gnm1.ann1.WIJ2N1 Arachis hypogaea HOM05D002376 ORTHO05D004654 4.6e-36 156.4 186 45.7
Lj6g0027008 Lotus japonicus HOM05D002376 ORTHO05D004654 4.6e-36 156.4 173 49.1
Rhsim01G0242200 Rhododendron simsii HOM05D002376 ORTHO05D004654 6.1e-36 156.0 181 47.5
THA.LOC104826270 Tarenaya hassleriana HOM05D002376 ORTHO05D004654 6.1e-36 156.0 207 48.3
Sc12g0000140 Simmondsia chinensis HOM05D002376 ORTHO05D004654 1.0e-35 155.2 344 35.5
Migut.D00832 Erythranthe guttata HOM05D002376 ORTHO05D004654 1.8e-35 154.5 174 47.1
HanXRQChr01g0013301 Helianthus annuus HOM05D002376 ORTHO05D004654 2.3e-35 154.1 208 42.8
DCAR_004798 Daucus carota HOM05D002376 ORTHO05D004654 3.9e-35 153.3 152 50.7
Lsat_1_v5_gn_5_175220 Lactuca sativa HOM05D002376 ORTHO05D004654 3.9e-35 153.3 171 49.7
ECA248G1568 Erigeron canadensis HOM05D002376 ORTHO05D004654 5.1e-35 152.9 206 44.7
Glyma.11G161200 Glycine max HOM05D002376 ORTHO05D004654 5.1e-35 152.9 258 37.6
COL.COLO4_11190 Corchorus olitorius HOM05D002376 ORTHO05D004654 6.7e-35 152.5 165 51.5
CAN.G473.25 Capsicum annuum HOM05D002376 ORTHO05D004654 8.8e-35 152.1 374 33.7
Hma1.2p1_2270F.1_g318510 Hydrangea macrophylla HOM05D002376 ORTHO05D004654 8.8e-35 152.1 318 35.8
VMungo0540G1534 Vigna mungo HOM05D002376 ORTHO05D004654 8.8e-35 152.1 352 34.1
AUR62009726 Chenopodium quinoa HOM05D002376 ORTHO05D004654 3.3e-34 150.2 204 46.1
vmacro14632 Vaccinium macrocarpon HOM05D002376 ORTHO05D004654 5.7e-34 149.4 180 44.4
Hund05050 Selenicereus undatus HOM05D002376 ORTHO05D004654 7.4e-34 149.1 168 47.6
Lalb_Chr20g0117351 Lupinus albus HOM05D002376 ORTHO05D004654 9.7e-34 148.7 178 47.8
Aa31LG5G6350 Aethionema arabicum HOM05D002376 ORTHO05D004654 1.3e-33 148.3 207 41.5
Aqoxy2G00731 Aquilegia oxysepala HOM05D002376 ORTHO05D004654 2.2e-33 147.5 174 48.3
Thecc.10G043800 Theobroma cacao HOM05D002376 ORTHO05D004654 2.8e-33 147.1 204 45.1
BcaB01g04112 Brassica carinata HOM05D002376 ORTHO05D004654 8.2e-33 145.6 176 46.0
Thhalv10016841m.g Eutrema salsugineum HOM05D002376 ORTHO05D004654 1.4e-32 144.8 183 46.4
ATR0681G169 Amborella trichopoda HOM05D002376 ORTHO05D004654 1.8e-32 144.4 164 51.2
A03p16960 Brassica napus HOM05D002376 ORTHO05D004654 1.8e-32 144.4 164 47.6
Aqoxy2G00736 Aquilegia oxysepala HOM05D002376 ORTHO05D004654 1.5e-31 141.4 202 43.1
MSTRG.12701 Avicennia marina HOM05D002376 ORTHO05D004654 2.6e-31 140.6 174 46.0
arahy.Tifrunner.gnm1.ann1.D8LDTS Arachis hypogaea HOM05D002376 ORTHO05D004654 3.4e-31 140.2 239 37.2
CsaV3_1G036670 Cucumis sativus L. HOM05D002376 ORTHO05D004654 4.5e-31 139.8 145 48.3
C03p19980 Brassica napus HOM05D002376 ORTHO05D004654 5.9e-31 139.4 172 44.2
BolC3t14376H Brassica oleracea HOM05D002376 ORTHO05D004654 5.9e-31 139.4 172 44.2
Nn5g26910 Nelumbo nucifera HOM05D002376 ORTHO05D004654 1.0e-30 138.7 257 38.9
EL10Ac7g15858 Beta vulgaris HOM05D002376 ORTHO05D004654 1.7e-30 137.9 195 42.1
BraA04t17841Z Brassica rapa HOM05D002376 ORTHO05D004654 1.7e-30 137.9 175 45.1
Cc01_g15150 Coffea canephora HOM05D002376 ORTHO05D004654 1.7e-30 137.9 197 43.7
CDE04G2750 Ceratophyllum demersum HOM05D002376 ORTHO05D004654 3.8e-30 136.7 182 44.0
Sp4g12910 Schrenkiella parvula HOM05D002376 ORTHO05D004654 3.8e-30 136.7 157 47.1
Zm00001eb303730 Zea mays HOM05D002376 ORTHO05D004654 3.8e-30 136.7 172 43.6
Gohir.A06G201400 Gossypium hirsutum HOM05D002376 ORTHO05D004654 5.0e-30 136.3 102 65.7
Gohir.A08G000028 Gossypium hirsutum HOM05D002376 ORTHO05D004654 5.0e-30 136.3 102 65.7
Os07g0230500 Oryza sativa ssp. japonica HOM05D002376 ORTHO05D004654 5.0e-30 136.3 148 49.3
BcaC01g05989 Brassica carinata HOM05D002376 ORTHO05D004654 6.5e-30 136.0 172 44.8
BcaC02g08025 Brassica carinata HOM05D002376 ORTHO05D004654 6.5e-30 136.0 234 37.2
A04p23110 Brassica napus HOM05D002376 ORTHO05D004654 1.1e-29 135.2 172 45.9
Gorai.005G269000 Gossypium raimondii HOM05D002376 ORTHO05D004654 1.1e-29 135.2 116 61.2
C04p59280 Brassica napus HOM05D002376 ORTHO05D004654 1.4e-29 134.8 179 43.0
BolC4t27433H Brassica oleracea HOM05D002376 ORTHO05D004654 1.4e-29 134.8 179 43.0
CARHR123670 Cardamine hirsuta HOM05D002376 ORTHO05D004654 2.5e-29 134.0 171 44.4
Actinidia11613 Actinidia chinensis HOM05D000055 ORTHO05D000057 4.2e-29 133.3 209 41.6
Carub.0004s1150 Capsella rubella HOM05D002376 ORTHO05D004654 4.2e-29 133.3 185 42.7
Gohir.1Z049334 Gossypium hirsutum HOM05D002376 ORTHO05D004654 5.5e-29 132.9 170 45.9
AL4G25210 Arabidopsis lyrata HOM05D002376 ORTHO05D004654 1.6e-28 131.3 162 44.4
AT2G30350 Arabidopsis thaliana HOM05D002376 ORTHO05D004654 2.7e-28 130.6 163 44.8
Gohir.1Z049465 Gossypium hirsutum HOM05D002376 ORTHO05D004654 7.9e-28 129.0 182 45.6
SHI19259 Sapria himalayana HOM05D002376 ORTHO05D004654 2.3e-27 127.5 249 36.1
BcaB06g28361 Brassica carinata HOM05D002376 ORTHO05D004654 6.7e-27 125.9 175 41.7
AUR62036221 Chenopodium quinoa HOM05D002376 ORTHO05D004654 2.6e-26 124.0 128 53.1
Gohir.A05G415701 Gossypium hirsutum HOM05D002376 ORTHO05D004654 4.4e-26 123.2 89 67.4
Psat5g150440 Pisum sativum HOM05D002376 ORTHO05D004654 2.8e-25 120.6 133 48.9
unitig_747.g21450 Utricularia gibba HOM05D002376 ORTHO05D004654 2.8e-25 120.6 160 43.8
C09p50170 Brassica napus HOM05D002376 ORTHO05D004654 1.4e-24 118.2 97 57.7
AagrBONN_evm.TU.Sc2ySwM_369.511 Anthoceros agrestis HOM05D002376 ORTHO05D004654 1.8e-24 117.9 189 39.7
BolC9t57873H Brassica oleracea HOM05D002376 ORTHO05D004654 1.8e-24 117.9 97 56.7
CiPaw.14G052300 Carya illinoinensis HOM05D002376 ORTHO05D004654 4.1e-24 116.7 227 35.7
A03p02950 Brassica napus HOM05D002376 ORTHO05D004654 1.7e-22 111.3 86 59.3
Gorai.010G000700 Gossypium raimondii HOM05D002376 ORTHO05D004654 3.8e-22 110.2 74 70.3
SEGI_33829 Sequoiadendron giganteum HOM05D002376 ORTHO05D004654 1.1e-21 108.6 82 61.0
C04p59230 Brassica napus HOM05D002376 ORTHO05D004654 9.4e-21 105.5 112 50.9
SMO364G0016 Selaginella moellendorffii HOM05D002376 ORTHO05D004654 9.4e-21 105.5 164 36.0
SEGI_39190 Sequoiadendron giganteum HOM05D002376 ORTHO05D004654 4.7e-20 103.2 162 40.1
Gohir.A08G000016 Gossypium hirsutum HOM05D002376 ORTHO05D004654 8.0e-20 102.4 116 50.9
Nn5g26899 Nelumbo nucifera HOM05D002376 ORTHO05D004654 8.0e-20 102.4 127 48.8
CBR_g20119 Chara braunii HOM05D002376 ORTHO05D004654 2.3e-19 100.9 182 36.3
Oeu011367.1 Olea europaea HOM05D002376 ORTHO05D004654 2.3e-19 100.9 120 45.8
Mapoly0004s0007 Marchantia polymorpha HOM05D002376 ORTHO05D004654 1.1e-18 98.6 155 38.1
Pp3c10_1920 Physcomitrium patens HOM05D002376 ORTHO05D004654 1.5e-18 98.2 196 32.1
BcaC02g08029 Brassica carinata HOM05D002376 ORTHO05D004654 3.3e-18 97.1 97 51.5
Prupe.3G073500 Prunus persica HOM05D002376 ORTHO05D004654 8.2e-17 92.4 87 55.2
BcaC02g08132 Brassica carinata HOM05D002376 ORTHO05D004654 1.8e-16 91.3 109 45.9
BolC4t27329H Brassica oleracea HOM05D002376 ORTHO05D004654 1.8e-16 91.3 109 45.9
C02p16040 Brassica napus HOM05D002376 ORTHO05D004654 9.1e-16 89.0 83 53.0
C07p50650 Brassica napus HOM05D002376 ORTHO05D004654 2.0e-15 87.8 83 51.8
BolC7t45569H Brassica oleracea HOM05D002376 ORTHO05D004654 2.0e-15 87.8 83 51.8
CBR_g31178 Chara braunii HOM05D002376 ORTHO05D004654 4.5e-15 86.7 154 34.4
Gohir.D13G241500 Gossypium hirsutum HOM05D002376 ORTHO05D004654 8.5e-14 82.4 80 56.2
C09p15830 Brassica napus HOM05D001212 ORTHO05D000246 1.2e-12 78.6 75 52.0
MCO16G118 Micromonas commoda HOM05D002376 ORTHO05D004654 6.1e-12 76.3 154 33.8
Gohir.A02G179401 Gossypium hirsutum HOM05D002376 ORTHO05D036218 8.0e-12 75.9 87 49.4
Prupe.1G103400 Prunus persica HOM05D002376 ORTHO05D004654 1.0e-11 75.5 47 78.7
Cre07.g351500 Chlamydomonas reinhardtii HOM05D002376 ORTHO05D004654 5.2e-11 73.2 183 30.1
BcaC04g19883 Brassica carinata HOM05D002376 ORTHO05D004654 1.5e-10 71.6 45 71.1
arahy.Tifrunner.gnm1.ann1.P4WV5Z Arachis hypogaea HOM05D000138 ORTHO05D000078 2.0e-10 71.2 44 72.7
arahy.Tifrunner.gnm1.ann1.S28F9G Arachis hypogaea HOM05D000138 ORTHO05D000078 2.0e-10 71.2 44 72.7
arahy.Tifrunner.gnm1.ann1.ANYB6V Arachis hypogaea HOM05D002376 ORTHO05D004654 5.7e-10 69.7 44 70.5
arahy.Tifrunner.gnm1.ann1.D1TE9J Arachis hypogaea HOM05D000138 ORTHO05D000078 5.7e-10 69.7 44 70.5
arahy.Tifrunner.gnm1.ann1.HWE26N Arachis hypogaea HOM05D002376 ORTHO05D004654 7.5e-10 69.3 44 70.5
arahy.Tifrunner.gnm1.ann1.C6LA65 Arachis hypogaea HOM05D002376 ORTHO05D004654 1.7e-09 68.2 46 67.4
PRCOL_00000864 Prasinoderma coloniale HOM05D002376 ORTHO05D004654 4.1e-08 63.5 160 26.2


User provided reference genes

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