Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.1G106000 Prunus persica HOM05D002376 ORTHO05D004654 3.5e-146 521.5 253 100.0
Prupe.6G043600 Prunus persica HOM05D002376 ORTHO05D004654 6.0e-114 414.5 252 82.1
Prupe.6G045800 Prunus persica HOM05D002376 ORTHO05D004654 5.1e-113 411.4 252 82.1
MD11G1056400 Malus domestica HOM05D002376 ORTHO05D004654 2.9e-100 369.0 250 74.0
MD03G1055200 Malus domestica HOM05D002376 ORTHO05D004654 1.4e-99 366.7 250 74.0
RcHm_v2.0_Chr5g0072441 Rosa chinensis HOM05D002376 ORTHO05D004654 2.3e-89 332.8 252 67.9
FAN25G0776 Fragaria x ananassa HOM05D002376 ORTHO05D004654 4.8e-87 325.1 248 66.1
FvH4_3g40230 Fragaria vesca HOM05D002376 ORTHO05D004654 1.2e-85 320.5 248 65.7
FAN11G3581 Fragaria x ananassa HOM05D002376 ORTHO05D004654 1.2e-85 320.5 248 65.7
FAN16G2868 Fragaria x ananassa HOM05D002376 ORTHO05D004654 1.2e-85 320.5 248 65.7
FAN21G3096 Fragaria x ananassa HOM05D002376 ORTHO05D004654 1.0e-84 317.4 248 65.7
Prupe.1G108400 Prunus persica HOM05D002376 ORTHO05D004654 1.1e-80 303.9 234 68.8
Dinv28716 Davidia involucrata HOM05D002376 ORTHO05D004654 3.3e-80 302.4 251 63.3
QL01p025227 Quercus lobata HOM05D002376 ORTHO05D004654 2.4e-78 296.2 247 62.3
Haze_24447 Corylus avellana HOM05D002376 ORTHO05D004654 3.9e-73 278.9 250 58.8
CSS0048295 Camellia sinensis var. sinensis HOM05D002376 ORTHO05D004654 6.3e-71 271.6 248 58.1
CANSAT54G2949 Cannabis sativa HOM05D002376 ORTHO05D004654 5.3e-70 268.5 246 57.7
TAR369G0569 Trochodendron aralioides HOM05D002376 ORTHO05D004654 9.1e-70 267.7 243 59.7
Ca_15029_v3 Cicer arietinum L. HOM05D002376 ORTHO05D004654 4.5e-69 265.4 198 66.7
ClCG03G000240 Citrullus lanatus HOM05D002376 ORTHO05D004654 7.7e-69 264.6 228 59.2
Hma1.2p1_1637F.1_g294890 Hydrangea macrophylla HOM05D002376 ORTHO05D004654 7.7e-69 264.6 254 57.1
CSS0050025 Camellia sinensis var. sinensis HOM05D002376 ORTHO05D004654 6.5e-68 261.5 256 56.6
TWI79G1034 Tripterygium wilfordii HOM05D002376 ORTHO05D004654 8.5e-68 261.2 243 58.0
GSVIVG01024586001 Vitis vinifera HOM05D002376 ORTHO05D004654 1.5e-67 260.4 234 59.8
Potri.019G127600 Populus trichocarpa HOM05D002376 ORTHO05D004654 2.5e-67 259.6 237 56.1
Glyma.18G054900 Glycine max HOM05D002376 ORTHO05D004654 7.2e-67 258.1 240 57.9
Sopen09g014780 Solanum pennellii HOM05D002376 ORTHO05D004654 7.2e-67 258.1 231 58.0
PGSC0003DMG400020864 Solanum tuberosum HOM05D002376 ORTHO05D004654 7.2e-67 258.1 228 56.6
Duzib168G1857 Durio zibethinus HOM05D002376 ORTHO05D004654 1.2e-66 257.3 227 60.8
PGR119G0696 Punica granatum HOM05D002376 ORTHO05D004654 1.6e-66 256.9 227 58.1
Solyc09g031790.4 Solanum lycopersicum HOM05D002376 ORTHO05D004654 1.6e-66 256.9 189 66.1
Medtr3g466410 Medicago truncatula HOM05D002376 ORTHO05D004654 3.6e-66 255.8 217 61.3
Sed0022472 Sechium edule HOM05D002376 ORTHO05D004654 3.6e-66 255.8 223 58.7
TAR623G0587 Trochodendron aralioides HOM05D002376 ORTHO05D004654 3.6e-66 255.8 201 64.7
Cpa.g.sc2.324 Carica papaya HOM05D002376 ORTHO05D004654 4.7e-66 255.4 254 54.7
SGA_v2.0_scaffold6G03299 Striga asiatica HOM05D002376 ORTHO05D004654 4.7e-66 255.4 220 59.5
Gohir.1Z049629 Gossypium hirsutum HOM05D002376 ORTHO05D004654 6.1e-66 255.0 211 63.0
Gohir.D04G000035 Gossypium hirsutum HOM05D002376 ORTHO05D004654 6.1e-66 255.0 211 63.0
Gorai.012G000400 Gossypium raimondii HOM05D002376 ORTHO05D004654 6.1e-66 255.0 211 63.0
Sabra13G0125800 Salix brachista HOM05D002376 ORTHO05D004654 6.1e-66 255.0 217 60.4
Nitab4.5_0000734g0130 Nicotiana tabacum HOM05D002376 ORTHO05D004654 8.0e-66 254.6 199 63.8
TPR.G24962 Trifolium pratense HOM05D002376 ORTHO05D004654 8.0e-66 254.6 210 61.0
Atru.chr1.2538 Acer truncatum HOM05D002376 ORTHO05D004654 1.8e-65 253.4 242 58.3
MELO3C020503.2 Cucumis melo HOM05D002376 ORTHO05D004654 2.3e-65 253.1 192 64.1
Lj6g0027008 Lotus japonicus HOM05D002376 ORTHO05D004654 2.3e-65 253.1 192 64.6
Phvul.006G076300 Phaseolus vulgaris HOM05D002376 ORTHO05D004654 2.3e-65 253.1 206 62.6
Thecc.09G361600 Theobroma cacao HOM05D002376 ORTHO05D004654 2.3e-65 253.1 225 60.4
Nitab4.5_0002601g0080 Nicotiana tabacum HOM05D002376 ORTHO05D004654 3.0e-65 252.7 188 66.0
MSTRG.21249 Avicennia marina HOM05D002376 ORTHO05D004654 4.0e-65 252.3 208 60.1
Peaxi162Scf01078g00415 Petunia axillaris HOM05D002376 ORTHO05D004654 4.0e-65 252.3 250 53.6
Gohir.A13G235800 Gossypium hirsutum HOM05D002376 ORTHO05D004654 5.2e-65 251.9 211 63.0
Actinidia23178 Actinidia chinensis HOM05D002376 ORTHO05D004654 6.7e-65 251.5 217 62.2
Manes.18G137600 Manihot esculenta HOM05D002376 ORTHO05D004654 6.7e-65 251.5 224 58.0
Ciclev10001469m.g Citrus clementina HOM05D002376 ORTHO05D004654 8.8e-65 251.1 225 60.9
Eucgr.J01841 Eucalyptus grandis HOM05D002376 ORTHO05D004654 1.5e-64 250.4 256 53.9
THA.LOC104826270 Tarenaya hassleriana HOM05D002376 ORTHO05D004654 2.0e-64 250.0 234 59.8
CAN.G473.25 Capsicum annuum HOM05D002376 ORTHO05D004654 3.3e-64 249.2 213 59.2
arahy.Tifrunner.gnm1.ann1.WIJ2N1 Arachis hypogaea HOM05D002376 ORTHO05D004654 4.4e-64 248.8 205 60.5
COL.COLO4_11190 Corchorus olitorius HOM05D002376 ORTHO05D004654 7.5e-64 248.1 185 66.5
ECA248G1568 Erigeron canadensis HOM05D002376 ORTHO05D004654 9.7e-64 247.7 226 58.0
Migut.D00832 Erythranthe guttata HOM05D002376 ORTHO05D004654 9.7e-64 247.7 215 58.1
Gorai.013G272400 Gossypium raimondii HOM05D002376 ORTHO05D004654 9.7e-64 247.7 211 62.6
Potri.013G155900 Populus trichocarpa HOM05D002376 ORTHO05D004654 1.3e-63 247.3 218 60.1
Lalb_Chr20g0117351 Lupinus albus HOM05D002376 ORTHO05D004654 1.7e-63 246.9 197 64.0
Lsat_1_v5_gn_5_175220 Lactuca sativa HOM05D002376 ORTHO05D004654 3.7e-63 245.7 224 58.0
Lalb_Chr15g0085961 Lupinus albus HOM05D002376 ORTHO05D004654 4.8e-63 245.4 191 65.4
PSO339G0904 Papaver somniferum HOM05D002376 ORTHO05D004654 6.3e-63 245.0 223 57.4
HanXRQChr01g0013301 Helianthus annuus HOM05D002376 ORTHO05D004654 8.2e-63 244.6 229 54.6
Aa31LG5G6350 Aethionema arabicum HOM05D002376 ORTHO05D004654 1.1e-62 244.2 231 55.0
VMungo0540G1534 Vigna mungo HOM05D002376 ORTHO05D004654 1.4e-62 243.8 202 62.4
HPP92_022854 Vanilla planifolia HOM05D003671 ORTHO05D004654 5.3e-62 241.9 194 62.4
arahy.Tifrunner.gnm1.ann1.D8LDTS Arachis hypogaea HOM05D002376 ORTHO05D004654 9.1e-62 241.1 239 53.1
Rhsim01G0242200 Rhododendron simsii HOM05D002376 ORTHO05D004654 1.6e-61 240.4 220 57.3
AUR62009726 Chenopodium quinoa HOM05D002376 ORTHO05D004654 2.7e-61 239.6 223 57.4
Thhalv10016841m.g Eutrema salsugineum HOM05D002376 ORTHO05D004654 2.7e-61 239.6 202 61.9
PSO384G2467 Papaver somniferum HOM05D002376 ORTHO05D004654 3.5e-61 239.2 223 57.4
BcaB01g04112 Brassica carinata HOM05D002376 ORTHO05D004654 5.9e-61 238.4 177 65.5
ATR0681G169 Amborella trichopoda HOM05D002376 ORTHO05D004654 1.0e-60 237.7 183 66.7
vmacro14632 Vaccinium macrocarpon HOM05D002376 ORTHO05D004654 1.0e-60 237.7 215 56.7
Sc12g0000140 Simmondsia chinensis HOM05D002376 ORTHO05D004654 1.3e-60 237.3 236 54.7
MSTRG.12701 Avicennia marina HOM05D002376 ORTHO05D004654 5.0e-60 235.3 197 61.9
A03p16960 Brassica napus HOM05D002376 ORTHO05D004654 5.0e-60 235.3 183 63.9
DCAR_004798 Daucus carota HOM05D002376 ORTHO05D004654 5.0e-60 235.3 171 64.9
Sp4g12910 Schrenkiella parvula HOM05D002376 ORTHO05D004654 1.1e-59 234.2 176 65.9
Thecc.10G043800 Theobroma cacao HOM05D002376 ORTHO05D004654 1.5e-59 233.8 224 57.1
Hund05050 Selenicereus undatus HOM05D002376 ORTHO05D004654 2.5e-59 233.0 174 64.4
SHI19259 Sapria himalayana HOM05D002376 ORTHO05D004654 3.2e-59 232.6 252 53.6
Hma1.2p1_2270F.1_g318510 Hydrangea macrophylla HOM05D002376 ORTHO05D004654 5.5e-59 231.9 246 54.1
Aqoxy2G00731 Aquilegia oxysepala HOM05D002376 ORTHO05D004654 7.2e-59 231.5 189 63.5
AL4G25210 Arabidopsis lyrata HOM05D002376 ORTHO05D004654 7.2e-59 231.5 182 63.2
Cc01_g15150 Coffea canephora HOM05D002376 ORTHO05D004654 7.2e-59 231.5 248 52.4
A04p23110 Brassica napus HOM05D002376 ORTHO05D004654 1.2e-58 230.7 191 61.3
BcaC02g08025 Brassica carinata HOM05D002376 ORTHO05D004654 1.6e-58 230.3 235 51.9
C03p19980 Brassica napus HOM05D002376 ORTHO05D004654 1.6e-58 230.3 191 60.2
BolC3t14376H Brassica oleracea HOM05D002376 ORTHO05D004654 1.6e-58 230.3 191 60.2
BraA04t17841Z Brassica rapa HOM05D002376 ORTHO05D004654 1.6e-58 230.3 177 64.4
Carub.0004s1150 Capsella rubella HOM05D002376 ORTHO05D004654 2.1e-58 229.9 204 59.3
CDE04G2750 Ceratophyllum demersum HOM05D002376 ORTHO05D004654 2.1e-58 229.9 205 57.1
Aqoxy2G00736 Aquilegia oxysepala HOM05D002376 ORTHO05D004654 2.7e-58 229.6 228 53.9
AT2G30350 Arabidopsis thaliana HOM05D002376 ORTHO05D004654 2.7e-58 229.6 182 63.7
CARHR123670 Cardamine hirsuta HOM05D002376 ORTHO05D004654 6.1e-58 228.4 177 64.4
EL10Ac7g15858 Beta vulgaris HOM05D002376 ORTHO05D004654 8.0e-58 228.0 238 50.4
BcaC01g05989 Brassica carinata HOM05D002376 ORTHO05D004654 1.4e-57 227.3 191 60.7
BcaB06g28361 Brassica carinata HOM05D002376 ORTHO05D004654 8.8e-57 224.6 172 64.0
C04p59280 Brassica napus HOM05D002376 ORTHO05D004654 1.5e-56 223.8 238 49.6
BolC4t27433H Brassica oleracea HOM05D002376 ORTHO05D004654 1.5e-56 223.8 238 49.6
Zm00001eb303730 Zea mays HOM05D002376 ORTHO05D004654 3.4e-56 222.6 222 53.6
Actinidia11613 Actinidia chinensis HOM05D000055 ORTHO05D000057 1.3e-55 220.7 241 51.9
Os07g0230500 Oryza sativa ssp. japonica HOM05D002376 ORTHO05D004654 3.7e-55 219.2 167 65.3
Psat5g150440 Pisum sativum HOM05D002376 ORTHO05D004654 1.1e-54 217.6 152 69.7
unitig_747.g21450 Utricularia gibba HOM05D002376 ORTHO05D004654 1.2e-53 214.2 179 61.5
CsaV3_1G036670 Cucumis sativus L. HOM05D002376 ORTHO05D004654 5.9e-53 211.8 173 60.7
AagrBONN_evm.TU.Sc2ySwM_369.511 Anthoceros agrestis HOM05D002376 ORTHO05D004654 3.4e-48 196.1 195 50.8
Nn5g26899 Nelumbo nucifera HOM05D002376 ORTHO05D004654 5.7e-48 195.3 146 67.8
Gohir.1Z049334 Gossypium hirsutum HOM05D002376 ORTHO05D004654 9.8e-48 194.5 212 51.9
Oeu011367.1 Olea europaea HOM05D002376 ORTHO05D004654 2.8e-47 193.0 139 66.9
Gohir.A08G000016 Gossypium hirsutum HOM05D002376 ORTHO05D004654 6.3e-47 191.8 188 56.9
Gohir.1Z049465 Gossypium hirsutum HOM05D002376 ORTHO05D004654 1.4e-46 190.7 211 52.6
SMO364G0016 Selaginella moellendorffii HOM05D002376 ORTHO05D004654 1.2e-45 187.6 183 50.3
Mapoly0004s0007 Marchantia polymorpha HOM05D002376 ORTHO05D004654 1.3e-44 184.1 174 52.9
Pp3c10_1920 Physcomitrium patens HOM05D002376 ORTHO05D004654 3.8e-44 182.6 229 43.2
Cfa011807 Carpinus fangiana HOM05D002376 ORTHO05D004654 1.1e-43 181.0 155 58.7
C04p59230 Brassica napus HOM05D002376 ORTHO05D004654 3.3e-43 179.5 177 54.8
Prupe.1G103400 Prunus persica HOM05D002376 ORTHO05D004654 3.6e-42 176.0 93 91.4
AUR62036221 Chenopodium quinoa HOM05D002376 ORTHO05D004654 4.6e-37 159.1 170 52.4
Glyma.11G161200 Glycine max HOM05D002376 ORTHO05D004654 1.3e-36 157.5 147 59.2
CBR_g31178 Chara braunii HOM05D002376 ORTHO05D004654 1.9e-35 153.7 173 45.7
Cre07.g351500 Chlamydomonas reinhardtii HOM05D002376 ORTHO05D004654 1.2e-34 151.0 227 41.0
CBR_g20119 Chara braunii HOM05D002376 ORTHO05D004654 2.0e-32 143.7 201 41.3
MCO16G118 Micromonas commoda HOM05D002376 ORTHO05D004654 4.4e-32 142.5 173 45.7
Nn5g26910 Nelumbo nucifera HOM05D002376 ORTHO05D004654 4.9e-31 139.0 133 56.4
Gohir.D13G241450 Gossypium hirsutum HOM05D002376 ORTHO05D004654 6.4e-31 138.7 103 65.0
CiPaw.14G052200 Carya illinoinensis HOM05D002376 ORTHO05D004654 1.1e-30 137.9 101 68.3
Gohir.A06G201400 Gossypium hirsutum HOM05D002376 ORTHO05D004654 1.1e-30 137.9 103 67.0
Gohir.A08G000028 Gossypium hirsutum HOM05D002376 ORTHO05D004654 1.1e-30 137.9 103 67.0
Gorai.005G269000 Gossypium raimondii HOM05D002376 ORTHO05D004654 1.4e-30 137.5 118 61.9
A03p02950 Brassica napus HOM05D002376 ORTHO05D004654 2.0e-29 133.7 121 57.0
PRCOL_00000864 Prasinoderma coloniale HOM05D002376 ORTHO05D004654 3.9e-28 129.4 189 39.2
Gohir.A05G415701 Gossypium hirsutum HOM05D002376 ORTHO05D004654 1.1e-27 127.9 90 70.0
C09p50170 Brassica napus HOM05D002376 ORTHO05D004654 1.6e-26 124.0 103 58.3
BolC9t57873H Brassica oleracea HOM05D002376 ORTHO05D004654 2.1e-26 123.6 103 57.3
BcaC02g08029 Brassica carinata HOM05D002376 ORTHO05D004654 6.8e-25 118.6 132 50.8
Gorai.010G000700 Gossypium raimondii HOM05D002376 ORTHO05D004654 1.1e-22 111.3 74 73.0
CiPaw.14G052300 Carya illinoinensis HOM05D002376 ORTHO05D004654 1.9e-22 110.5 100 57.0
SEGI_39190 Sequoiadendron giganteum HOM05D002376 ORTHO05D004654 1.0e-20 104.8 119 47.9
SEGI_33829 Sequoiadendron giganteum HOM05D002376 ORTHO05D004654 3.0e-20 103.2 82 58.5
Eucgr.C01059 Eucalyptus grandis HOM05D002376 ORTHO05D004654 1.2e-18 97.8 50 86.0
BcaC02g08132 Brassica carinata HOM05D002376 ORTHO05D004654 2.6e-16 90.1 109 46.8
BolC4t27329H Brassica oleracea HOM05D002376 ORTHO05D004654 2.6e-16 90.1 109 46.8
C07p50650 Brassica napus HOM05D002376 ORTHO05D004654 2.9e-15 86.7 83 53.0
BolC7t45569H Brassica oleracea HOM05D002376 ORTHO05D004654 2.9e-15 86.7 83 53.0
Prupe.3G073500 Prunus persica HOM05D002376 ORTHO05D004654 2.9e-15 86.7 45 88.9
C02p16040 Brassica napus HOM05D002376 ORTHO05D004654 3.8e-15 86.3 83 53.0
Gohir.D13G241500 Gossypium hirsutum HOM05D002376 ORTHO05D004654 4.9e-15 85.9 80 58.8
Cfa023829 Carpinus fangiana HOM05D002376 ORTHO05D004654 2.7e-13 80.1 160 31.9
BcaC04g19883 Brassica carinata HOM05D002376 ORTHO05D004654 6.0e-13 79.0 62 61.3
Gohir.A02G179401 Gossypium hirsutum HOM05D002376 ORTHO05D036218 6.0e-13 79.0 96 49.0
C09p15830 Brassica napus HOM05D001212 ORTHO05D000246 1.3e-12 77.8 75 53.3
arahy.Tifrunner.gnm1.ann1.P4WV5Z Arachis hypogaea HOM05D000138 ORTHO05D000078 3.0e-12 76.6 47 74.5
arahy.Tifrunner.gnm1.ann1.ANYB6V Arachis hypogaea HOM05D002376 ORTHO05D004654 4.3e-11 72.8 45 73.3
arahy.Tifrunner.gnm1.ann1.D1TE9J Arachis hypogaea HOM05D000138 ORTHO05D000078 4.3e-11 72.8 45 73.3
FAN26G2163 Fragaria x ananassa HOM05D002376 ORTHO05D004654 4.3e-11 72.8 47 66.0
arahy.Tifrunner.gnm1.ann1.S28F9G Arachis hypogaea HOM05D000138 ORTHO05D000078 5.6e-11 72.4 44 75.0
arahy.Tifrunner.gnm1.ann1.C6LA65 Arachis hypogaea HOM05D002376 ORTHO05D004654 3.6e-10 69.7 46 67.4
arahy.Tifrunner.gnm1.ann1.HWE26N Arachis hypogaea HOM05D002376 ORTHO05D004654 6.2e-10 68.9 44 68.2
Mapoly0059s0058 Marchantia polymorpha HOM05D000916 ORTHO05D009274 1.5e-08 64.3 160 30.0
FvH4_7g05780 Fragaria vesca HOM05D014655 ORTHO05D045933 1.7e-07 60.8 40 62.5
SEGI_20425 Sequoiadendron giganteum HOM05D000916 ORTHO05D009274 6.4e-07 58.9 91 37.4
FAN19G3001 Fragaria x ananassa HOM05D014655 ORTHO05D045933 1.9e-06 57.4 40 60.0
EL10Ac2g04385 Beta vulgaris HOM05D000916 ORTHO05D009274 4.2e-06 56.2 100 33.0


User provided reference genes

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