Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.1G072500 Prunus persica HOM05D006474 ORTHO05D007994 7.8e-238 826.6 390 100.0
MD13G1241100 Malus domestica HOM05D006474 ORTHO05D007994 4.8e-195 684.5 414 79.5
RcHm_v2.0_Chr4g0398871 Rosa chinensis HOM05D006474 ORTHO05D007994 1.0e-189 666.8 417 76.5
FAN07G0584 Fragaria x ananassa HOM05D006474 ORTHO05D007994 9.4e-183 643.7 405 74.3
FAN17G1111 Fragaria x ananassa HOM05D006474 ORTHO05D007994 8.0e-182 640.6 418 72.7
FvH4_4g06930 Fragaria vesca HOM05D006474 ORTHO05D007994 1.0e-181 640.2 405 74.3
FAN12G2823 Fragaria x ananassa HOM05D006474 ORTHO05D007994 1.4e-181 639.8 418 72.7
GSVIVG01029282001 Vitis vinifera HOM05D006474 ORTHO05D007994 3.7e-163 578.6 385 69.9
Sabra06G0054200 Salix brachista HOM05D006474 ORTHO05D007994 1.4e-157 560.1 366 72.1
arahy.Tifrunner.gnm1.ann1.Z6GGIF Arachis hypogaea HOM05D006474 ORTHO05D007994 5.2e-157 558.1 362 70.2
PGR142G0270 Punica granatum HOM05D006474 ORTHO05D007994 5.2e-157 558.1 411 65.9
CiPaw.07G199100 Carya illinoinensis HOM05D006474 ORTHO05D007994 2.6e-156 555.8 391 66.8
arahy.Tifrunner.gnm1.ann1.HVXZ0P Arachis hypogaea HOM05D006474 ORTHO05D007994 4.4e-156 555.1 426 62.4
Eucgr.C00087 Eucalyptus grandis HOM05D006474 ORTHO05D007994 5.7e-156 554.7 390 66.4
Ca_21263_v3 Cicer arietinum L. HOM05D006474 ORTHO05D007994 7.5e-156 554.3 365 69.6
Thecc.04G204000 Theobroma cacao HOM05D006474 ORTHO05D007994 3.7e-155 552.0 389 67.4
Potri.006G072800 Populus trichocarpa HOM05D006474 ORTHO05D007994 1.8e-154 549.7 366 70.8
Glyma.17G057700 Glycine max HOM05D006474 ORTHO05D007994 2.4e-154 549.3 421 62.5
Manes.06G017600 Manihot esculenta HOM05D006474 ORTHO05D007994 5.4e-154 548.1 386 68.1
Actinidia38505 Actinidia chinensis HOM05D006474 ORTHO05D007994 7.0e-154 547.7 420 64.0
Sc14g0003050 Simmondsia chinensis HOM05D006474 ORTHO05D007994 1.6e-153 546.6 363 68.3
Lj4g0020492 Lotus japonicus HOM05D006474 ORTHO05D007994 2.7e-153 545.8 416 62.3
Aqoxy7G02891 Aquilegia oxysepala HOM05D006474 ORTHO05D007994 5.9e-153 544.7 391 65.2
Cpa.g.sc115.63 Carica papaya HOM05D006474 ORTHO05D007994 1.7e-152 543.1 385 65.7
Medtr4g127130 Medicago truncatula HOM05D006474 ORTHO05D007994 2.9e-152 542.3 401 63.6
COL.COLO4_37571 Corchorus olitorius HOM05D006474 ORTHO05D007994 5.0e-152 541.6 364 69.8
QL02p064597 Quercus lobata HOM05D006474 ORTHO05D007994 5.0e-152 541.6 368 68.8
Haze_22046 Corylus avellana HOM05D006474 ORTHO05D007994 1.9e-151 539.7 434 61.3
Nitab4.5_0004916g0010 Nicotiana tabacum HOM05D006474 ORTHO05D007994 1.9e-151 539.7 385 66.0
TAR383G1087 Trochodendron aralioides HOM05D006474 ORTHO05D007994 1.9e-151 539.7 403 64.3
Cc01_g11810 Coffea canephora HOM05D006474 ORTHO05D007994 7.3e-151 537.7 367 68.1
TPR.G5392 Trifolium pratense HOM05D006474 ORTHO05D007994 7.3e-151 537.7 364 67.6
Gohir.A05G408600 Gossypium hirsutum HOM05D006474 ORTHO05D007994 1.2e-150 537.0 367 67.0
DCAR_020143 Daucus carota HOM05D006474 ORTHO05D007994 2.8e-150 535.8 370 66.8
Gorai.012G008200 Gossypium raimondii HOM05D006474 ORTHO05D007994 3.6e-150 535.4 395 63.5
Nitab4.5_0000028g0400 Nicotiana tabacum HOM05D006474 ORTHO05D007994 4.7e-150 535.0 383 66.6
HanXRQChr06g0181391 Helianthus annuus HOM05D006474 ORTHO05D007994 1.0e-149 533.9 418 60.5
Duzib170G0180 Durio zibethinus HOM05D006474 ORTHO05D007994 2.3e-149 532.7 416 62.5
Lalb_Chr07g0180731 Lupinus albus HOM05D006474 ORTHO05D007994 2.3e-149 532.7 393 64.1
TWI32G0724 Tripterygium wilfordii HOM05D006474 ORTHO05D007994 8.9e-149 530.8 371 66.3
vmacro20800 Vaccinium macrocarpon HOM05D006474 ORTHO05D007994 7.5e-148 527.7 441 60.1
MBI14_g10727_MAGBIO Magnolia biondii HOM05D006474 ORTHO05D007994 2.2e-147 526.2 398 62.8
ClCG03G011950 Citrullus lanatus HOM05D006474 ORTHO05D007994 2.9e-147 525.8 383 64.2
PGSC0003DMG400019888 Solanum tuberosum HOM05D006474 ORTHO05D007994 4.9e-147 525.0 364 66.8
EL10Ac8g19287 Beta vulgaris HOM05D006474 ORTHO05D007994 8.3e-147 524.2 361 65.4
Sopen07g004200 Solanum pennellii HOM05D006474 ORTHO05D007994 1.9e-146 523.1 364 66.8
PSO063G0500 Papaver somniferum HOM05D006474 ORTHO05D007994 4.1e-146 521.9 367 66.8
Peaxi162Scf00046g00533 Petunia axillaris HOM05D006474 ORTHO05D007994 7.0e-146 521.2 396 63.1
MELO3C009992.2 Cucumis melo HOM05D006474 ORTHO05D007994 9.2e-146 520.8 381 62.7
Ciclev10008481m.g Citrus clementina HOM05D006474 ORTHO05D007994 1.6e-145 520.0 422 59.7
CsaV3_1G043980 Cucumis sativus L. HOM05D006474 ORTHO05D007994 3.5e-145 518.8 383 63.2
Solyc07g008310.3 Solanum lycopersicum HOM05D006474 ORTHO05D007994 3.5e-145 518.8 400 61.8
AUR62027431 Chenopodium quinoa HOM05D006474 ORTHO05D007994 3.0e-144 515.8 361 62.9
MSTRG.5932 Avicennia marina HOM05D006474 ORTHO05D007994 1.9e-143 513.1 364 64.3
CDE02G2399 Ceratophyllum demersum HOM05D006474 ORTHO05D007994 3.3e-143 512.3 370 63.8
ECA236G3875 Erigeron canadensis HOM05D006474 ORTHO05D007994 7.3e-143 511.1 381 61.4
Nn8g40661 Nelumbo nucifera HOM05D006474 ORTHO05D007994 1.2e-142 510.4 351 68.4
Os06g0698785 Oryza sativa ssp. japonica HOM05D006474 ORTHO05D007994 1.2e-142 510.4 414 59.7
CARHR237790 Cardamine hirsuta HOM05D006474 ORTHO05D007994 1.6e-142 510.0 366 66.1
Oeu035450.1 Olea europaea HOM05D006474 ORTHO05D007994 4.7e-142 508.4 367 64.9
Migut.J00779 Erythranthe guttata HOM05D006474 ORTHO05D007994 8.1e-142 507.7 366 64.2
Sp7g27700 Schrenkiella parvula HOM05D006474 ORTHO05D007994 1.1e-141 507.3 367 65.1
Aa31LG2G20660 Aethionema arabicum HOM05D006474 ORTHO05D007994 1.8e-141 506.5 366 65.3
A03p59310 Brassica napus HOM05D006474 ORTHO05D007994 1.8e-141 506.5 371 63.9
BraA03t14988Z Brassica rapa HOM05D006474 ORTHO05D007994 1.8e-141 506.5 371 63.9
AT4G29890 Arabidopsis thaliana HOM05D006474 ORTHO05D007994 4.0e-141 505.4 392 62.2
Thhalv10025251m.g Eutrema salsugineum HOM05D006474 ORTHO05D007994 5.2e-141 505.0 368 64.9
HPP92_010297 Vanilla planifolia HOM05D006474 ORTHO05D007994 6.8e-141 504.6 360 64.4
AL7G22360 Arabidopsis lyrata HOM05D006474 ORTHO05D007994 1.2e-140 503.8 366 65.3
C07p57320 Brassica napus HOM05D006474 ORTHO05D007994 2.0e-140 503.1 371 64.7
Zm00001eb273050 Zea mays HOM05D006474 ORTHO05D007994 2.6e-140 502.7 364 61.8
ATR0580G130 Amborella trichopoda HOM05D006474 ORTHO05D007994 9.8e-140 500.7 391 60.9
Gohir.D04G006800 Gossypium hirsutum HOM05D006474 ORTHO05D007994 2.2e-139 499.6 371 63.3
SGA_v2.0_scaffold112G31632 Striga asiatica HOM05D006474 ORTHO05D007994 2.2e-139 499.6 405 60.2
BolC7t46201H Brassica oleracea HOM05D006474 ORTHO05D007994 6.4e-139 498.0 378 63.0
SalBow1G1087 Salvia bowleyana HOM05D006474 ORTHO05D007994 1.1e-138 497.3 366 62.6
Carub.0007s1076 Capsella rubella HOM05D006474 ORTHO05D007994 5.4e-138 495.0 366 63.1
BcaNung00499 Brassica carinata HOM05D006474 ORTHO05D007994 9.2e-138 494.2 373 64.6
Atru.BG.24.p Acer truncatum HOM05D006474 ORTHO05D007994 6.6e-136 488.0 345 66.7
Dinv41197 Davidia involucrata HOM05D006474 ORTHO05D007994 2.5e-135 486.1 370 62.2
Sed0005056 Sechium edule HOM05D006474 ORTHO05D007994 3.3e-135 485.7 372 61.0
Sed0007392 Sechium edule HOM05D006474 ORTHO05D007994 4.3e-135 485.3 382 58.9
Sopen07g004190 Solanum pennellii HOM05D006474 ORTHO05D007994 2.8e-134 482.6 367 61.9
Solyc07g008300.3 Solanum lycopersicum HOM05D006474 ORTHO05D007994 1.1e-133 480.7 380 60.3
Rhsim01G0114400 Rhododendron simsii HOM05D006474 ORTHO05D007994 3.2e-130 469.2 324 68.2
Migut.J00780 Erythranthe guttata HOM05D006474 ORTHO05D007994 9.2e-130 467.6 368 58.2
HanXRQChr06g0181381 Helianthus annuus HOM05D006474 ORTHO05D007994 1.2e-129 467.2 420 54.3
CANSAT54G2413 Cannabis sativa HOM05D006474 ORTHO05D007994 1.6e-129 466.8 355 62.8
Psat4g014320 Pisum sativum HOM05D006474 ORTHO05D007994 4.6e-129 465.3 332 65.4
Lsat_1_v5_gn_8_68301 Lactuca sativa HOM05D006474 ORTHO05D007994 3.1e-125 452.6 367 59.9
Ah.14g085320 Amaranthus hybridus HOM05D006474 ORTHO05D007994 8.9e-125 451.1 320 66.2
AUR62031264 Chenopodium quinoa HOM05D006474 ORTHO05D007994 8.7e-120 434.5 304 64.8
Phvul.003G140100 Phaseolus vulgaris HOM05D006474 ORTHO05D007994 8.7e-120 434.5 293 66.9
SMO196G0177 Selaginella moellendorffii HOM05D006474 ORTHO05D007994 1.5e-119 433.7 359 56.3
AagrBONN_evm.TU.Sc2ySwM_117.1622 Anthoceros agrestis HOM05D006474 ORTHO05D007994 2.0e-116 423.3 368 53.8
EL10Ac6g13937 Beta vulgaris HOM05D006474 ORTHO05D007994 5.8e-116 421.8 337 53.7
AUR62032506 Chenopodium quinoa HOM05D006474 ORTHO05D007994 9.9e-116 421.0 389 49.9
AUR62043230 Chenopodium quinoa HOM05D006474 ORTHO05D007994 1.3e-115 420.6 389 50.1
Pp3c13_13580 Physcomitrium patens HOM05D006474 ORTHO05D007994 4.2e-114 415.6 358 52.8
CAN.G403.4 Capsicum annuum HOM05D006474 ORTHO05D007994 1.6e-113 413.7 306 64.4
Mapoly0089s0013 Marchantia polymorpha HOM05D006474 ORTHO05D007994 7.6e-108 394.8 377 50.7
CSS0012665 Camellia sinensis var. sinensis HOM05D006474 ORTHO05D007994 1.8e-101 373.6 225 75.1
PSO170G4238 Papaver somniferum HOM05D006474 ORTHO05D007994 3.1e-101 372.9 275 64.0
Cfa013469 Carpinus fangiana HOM05D006474 ORTHO05D007994 6.0e-97 358.6 254 68.9
FAN22G2051 Fragaria x ananassa HOM05D006474 ORTHO05D007994 5.0e-91 339.0 336 53.9
Lju50A4G45 Lonicera japonica HOM05D006474 ORTHO05D007994 1.9e-87 327.0 238 68.1
Hund22985 Selenicereus undatus HOM05D006474 ORTHO05D007994 1.1e-77 294.7 389 45.8
MCO02G024 Micromonas commoda HOM05D006474 ORTHO05D007994 5.3e-77 292.4 365 43.0
Lsat_1_v5_gn_9_69680 Lactuca sativa HOM05D006474 ORTHO05D007994 4.7e-73 279.3 237 58.2
Phvul.010G082000 Phaseolus vulgaris HOM05D006474 ORTHO05D007994 1.8e-64 250.8 186 62.9
Ah.03g136670 Amaranthus hybridus HOM05D006474 ORTHO05D007994 3.7e-54 216.5 231 42.9
Lsat_1_v5_gn_5_32380 Lactuca sativa HOM05D006474 ORTHO05D007994 1.1e-53 214.9 194 53.1
PRCOL_00004194 Prasinoderma coloniale HOM05D006474 ORTHO05D007994 5.4e-45 186.0 466 28.8
RcHm_v2.0_Chr4g0398881 Rosa chinensis HOM05D006474 ORTHO05D007994 2.7e-36 157.1 278 37.4
SEGI_01125 Sequoiadendron giganteum HOM05D006474 ORTHO05D007994 4.9e-30 136.3 105 55.2
Phvul.011G131100 Phaseolus vulgaris HOM05D006474 ORTHO05D007994 1.4e-21 108.2 77 63.6
Actinidia29962 Actinidia chinensis HOM05D006474 ORTHO05D007994 4.1e-21 106.7 90 56.7
Gohir.A01G088200 Gossypium hirsutum HOM05D006474 ORTHO05D007994 2.3e-19 100.9 60 73.3
SEGI_13868 Sequoiadendron giganteum HOM05D006474 ORTHO05D007994 6.6e-19 99.4 60 75.0
Thecc.09G192500 Theobroma cacao HOM05D006474 ORTHO05D007994 6.6e-19 99.4 60 75.0
Gohir.A08G164600 Gossypium hirsutum HOM05D000075 ORTHO05D000264 1.5e-18 98.2 72 61.1
Lsat_1_v5_gn_3_77541 Lactuca sativa HOM05D006474 ORTHO05D007994 1.9e-13 81.3 51 66.7
Oeu005633.1 Olea europaea HOM05D006474 ORTHO05D007994 3.2e-13 80.5 62 59.7
Gohir.A05G306101 Gossypium hirsutum HOM05D005508 ORTHO05D007994 3.5e-12 77.0 43 72.1
SEGI_25707 Sequoiadendron giganteum HOM05D006474 ORTHO05D007994 2.1e-09 67.8 41 63.4
Gohir.A06G077600 Gossypium hirsutum HOM05D000075 ORTHO05D000264 4.4e-07 60.1 71 46.5


User provided reference genes

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