Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.1G069700 Prunus persica HOM05D005537 ORTHO05D006776 1.5e-298 1028.9 573 100.0
MD16G1242600 Malus domestica HOM05D005537 ORTHO05D006776 5.5e-248 860.9 558 85.8
MD13G1237200 Malus domestica HOM05D005537 ORTHO05D006776 1.2e-239 833.2 558 83.5
FAN17G0445 Fragaria x ananassa HOM05D005537 ORTHO05D006776 4.1e-203 711.8 530 72.3
FAN07G2345 Fragaria x ananassa HOM05D005537 ORTHO05D006776 7.3e-200 701.0 537 70.0
FAN22G0220 Fragaria x ananassa HOM05D005537 ORTHO05D006776 2.1e-194 682.9 532 69.4
FvH4_4g06690 Fragaria vesca HOM05D005537 ORTHO05D006776 4.6e-194 681.8 530 69.1
FAN12G0761 Fragaria x ananassa HOM05D005537 ORTHO05D006776 1.3e-193 680.2 530 68.7
Haze_22074 Corylus avellana HOM05D005537 ORTHO05D006776 1.3e-177 627.1 535 66.0
Cfa013489 Carpinus fangiana HOM05D005537 ORTHO05D006776 2.8e-175 619.4 539 64.9
CiPaw.07G200800 Carya illinoinensis HOM05D005537 ORTHO05D006776 7.1e-171 604.7 536 63.8
ClCG11G011540 Citrullus lanatus HOM05D005537 ORTHO05D006776 4.2e-163 578.9 538 58.9
CANSAT01G2612 Cannabis sativa HOM05D005537 ORTHO05D006776 3.5e-162 575.9 538 60.6
Ciclev10010385m.g Citrus clementina HOM05D005537 ORTHO05D006776 3.3e-160 569.3 543 59.7
MELO3C003946.2 Cucumis melo HOM05D005537 ORTHO05D006776 3.3e-160 569.3 538 60.4
Dinv25489 Davidia involucrata HOM05D005537 ORTHO05D006776 1.4e-158 563.9 540 58.3
Manes.02G080100 Manihot esculenta HOM05D005537 ORTHO05D006776 4.9e-156 555.4 537 58.5
Sed0014380 Sechium edule HOM05D005537 ORTHO05D006776 1.1e-155 554.3 535 57.6
Atru.chr2.2727 Acer truncatum HOM05D005537 ORTHO05D006776 1.9e-155 553.5 538 59.5
Thecc.08G084500 Theobroma cacao HOM05D005537 ORTHO05D006776 1.3e-153 547.4 547 55.6
Sed0009431 Sechium edule HOM05D005537 ORTHO05D006776 5.1e-153 545.4 533 59.5
CSS0045027 Camellia sinensis var. sinensis HOM05D005537 ORTHO05D006776 1.1e-152 544.3 550 57.6
arahy.Tifrunner.gnm1.ann1.W452X0 Arachis hypogaea HOM05D005537 ORTHO05D006776 2.5e-152 543.1 549 56.3
CSS0042006 Camellia sinensis var. sinensis HOM05D005537 ORTHO05D006776 2.5e-152 543.1 550 57.5
QL11p009893 Quercus lobata HOM05D005537 ORTHO05D006776 3.3e-152 542.7 539 59.6
COL.COLO4_28459 Corchorus olitorius HOM05D005537 ORTHO05D006776 1.6e-151 540.4 542 58.5
Duzib093G2104 Durio zibethinus HOM05D005537 ORTHO05D006776 1.4e-150 537.3 539 57.3
arahy.Tifrunner.gnm1.ann1.HQKU7C Arachis hypogaea HOM05D005537 ORTHO05D006776 2.4e-150 536.6 549 55.9
Gorai.002G136300 Gossypium raimondii HOM05D005537 ORTHO05D006776 4.1e-150 535.8 541 55.3
VMungo1215G0900 Vigna mungo HOM05D005537 ORTHO05D006776 5.3e-150 535.4 550 58.4
Duzib041G0776 Durio zibethinus HOM05D005537 ORTHO05D006776 5.9e-149 531.9 540 55.4
Glyma.13G103200 Glycine max HOM05D005537 ORTHO05D006776 1.0e-148 531.2 545 59.4
Gohir.A06G025900 Gossypium hirsutum HOM05D005537 ORTHO05D006776 2.2e-148 530.0 546 56.4
TAR624G0592 Trochodendron aralioides HOM05D005537 ORTHO05D006776 2.2e-148 530.0 541 57.5
Gohir.D06G023000 Gossypium hirsutum HOM05D005537 ORTHO05D006776 5.0e-148 528.9 546 56.4
Gorai.010G027600 Gossypium raimondii HOM05D005537 ORTHO05D006776 7.2e-147 525.0 546 56.2
CiPaw.08G029800 Carya illinoinensis HOM05D005537 ORTHO05D006776 2.1e-146 523.5 488 59.8
THA.LOC104799619 Tarenaya hassleriana HOM05D005537 ORTHO05D006776 4.6e-146 522.3 538 54.3
Lju50A4T51 Lonicera japonica HOM05D005537 ORTHO05D006776 3.0e-145 519.6 534 56.2
TPR.G37121 Trifolium pratense HOM05D005537 ORTHO05D006776 4.3e-144 515.8 546 56.8
TWI63G1753 Tripterygium wilfordii HOM05D005537 ORTHO05D006776 5.7e-144 515.4 579 53.4
Gohir.A01G123800 Gossypium hirsutum HOM05D005537 ORTHO05D006776 1.3e-143 514.2 541 54.3
PGR044G0610 Punica granatum HOM05D005537 ORTHO05D006776 1.7e-143 513.8 539 57.1
Ca_21044_v3 Cicer arietinum L. HOM05D005537 ORTHO05D006776 8.2e-143 511.5 539 56.2
Sabra12G0025000 Salix brachista HOM05D005537 ORTHO05D006776 8.2e-143 511.5 541 53.4
Potri.012G036500 Populus trichocarpa HOM05D005537 ORTHO05D006776 1.1e-142 511.1 541 54.0
Lalb_Chr13g0299751 Lupinus albus HOM05D005537 ORTHO05D006776 5.3e-142 508.8 537 57.2
vmacro19325 Vaccinium macrocarpon HOM05D005537 ORTHO05D006776 3.4e-141 506.1 544 54.0
Lj2g0020928 Lotus japonicus HOM05D005537 ORTHO05D006776 1.0e-140 504.6 548 57.1
Medtr4g133100 Medicago truncatula HOM05D005537 ORTHO05D006776 1.7e-140 503.8 543 56.0
Cpa.g.sc115.49 Carica papaya HOM05D005537 ORTHO05D006776 1.2e-138 497.7 496 54.6
Aa31LG1G14080 Aethionema arabicum HOM05D005537 ORTHO05D006776 6.7e-137 491.9 536 52.8
RhsimUnG0132200 Rhododendron simsii HOM05D005537 ORTHO05D006776 8.8e-137 491.5 542 53.1
Rhsim08G0162000 Rhododendron simsii HOM05D005537 ORTHO05D006776 1.1e-136 491.1 542 53.1
RcHm_v2.0_Chr4g0398601 Rosa chinensis HOM05D005537 ORTHO05D006776 9.7e-136 488.0 320 75.9
Sabra15G0023400 Salix brachista HOM05D005537 ORTHO05D006776 3.7e-135 486.1 553 53.2
Psat4g004960 Pisum sativum HOM05D005537 ORTHO05D006776 2.4e-134 483.4 546 54.9
ECA233G0023 Erigeron canadensis HOM05D005537 ORTHO05D006776 4.5e-133 479.2 556 54.3
BcaB08g36512 Brassica carinata HOM05D005537 ORTHO05D006776 7.7e-133 478.4 542 52.2
CARHR192210 Cardamine hirsuta HOM05D005537 ORTHO05D006776 7.7e-133 478.4 537 49.9
Eucgr.C02216 Eucalyptus grandis HOM05D005537 ORTHO05D006776 2.2e-132 476.9 534 55.4
HanXRQChr13g0401171 Helianthus annuus HOM05D005537 ORTHO05D006776 2.9e-132 476.5 549 53.4
C09p55630 Brassica napus HOM05D005537 ORTHO05D006776 1.4e-131 474.2 537 51.0
BcaC04g19447 Brassica carinata HOM05D005537 ORTHO05D006776 1.9e-131 473.8 551 50.3
AT5G20600 Arabidopsis thaliana HOM05D005537 ORTHO05D006776 2.5e-131 473.4 535 49.3
BolC9t58429H Brassica oleracea HOM05D005537 ORTHO05D006776 4.2e-131 472.6 550 50.4
Carub.0006s1893 Capsella rubella HOM05D005537 ORTHO05D006776 1.6e-130 470.7 540 48.7
Thhalv10013208m.g Eutrema salsugineum HOM05D005537 ORTHO05D006776 3.6e-130 469.5 549 49.4
AL6G32140 Arabidopsis lyrata HOM05D005537 ORTHO05D006776 6.1e-130 468.8 534 49.1
Sp6g23880 Schrenkiella parvula HOM05D005537 ORTHO05D006776 1.0e-129 468.0 534 50.9
A10p19410 Brassica napus HOM05D005537 ORTHO05D006776 2.6e-128 463.4 533 50.8
BraA10t44018Z Brassica rapa HOM05D005537 ORTHO05D006776 9.7e-128 461.5 547 50.1
DCAR_017989 Daucus carota HOM05D005537 ORTHO05D006776 2.8e-127 459.9 581 46.8
CDE05G2659 Ceratophyllum demersum HOM05D005537 ORTHO05D006776 1.2e-125 454.5 536 49.8
CDE05G3054 Ceratophyllum demersum HOM05D005537 ORTHO05D006776 2.6e-125 453.4 554 50.4
Gohir.D01G111500 Gossypium hirsutum HOM05D005537 ORTHO05D006776 4.5e-125 452.6 486 52.9
Aqoxy5G04373 Aquilegia oxysepala HOM05D005537 ORTHO05D006776 5.9e-125 452.2 591 49.2
Peaxi162Scf00231g10125 Petunia axillaris HOM05D005537 ORTHO05D006776 5.9e-125 452.2 555 51.2
BolC3t13639H Brassica oleracea HOM05D005537 ORTHO05D006776 5.0e-124 449.1 526 48.9
Lsat_1_v5_gn_6_25660 Lactuca sativa HOM05D005537 ORTHO05D006776 1.6e-122 444.1 538 52.2
Nitab4.5_0000055g0260 Nicotiana tabacum HOM05D005537 ORTHO05D006776 3.6e-122 443.0 571 48.9
Cc06_g13120 Coffea canephora HOM05D005537 ORTHO05D006776 1.0e-121 441.4 546 50.0
PSO063G7542 Papaver somniferum HOM05D005537 ORTHO05D006776 1.8e-121 440.7 534 51.7
Sc18g0003000 Simmondsia chinensis HOM05D005537 ORTHO05D006776 5.7e-120 435.6 542 49.8
Solyc07g017940.1 Solanum lycopersicum HOM05D005537 ORTHO05D006776 7.5e-120 435.3 575 48.9
PGSC0003DMG400004098 Solanum tuberosum HOM05D005537 ORTHO05D006776 1.3e-119 434.5 569 48.9
Sopen07g006800 Solanum pennellii HOM05D005537 ORTHO05D006776 1.7e-119 434.1 576 48.4
PSO170G0047 Papaver somniferum HOM05D005537 ORTHO05D006776 1.4e-118 431.0 533 50.8
Nitab4.5_0004772g0040 Nicotiana tabacum HOM05D005537 ORTHO05D006776 1.6e-117 427.6 581 47.7
Nn8g40421 Nelumbo nucifera HOM05D005537 ORTHO05D006776 4.5e-117 426.0 551 47.4
MSTRG.26216 Avicennia marina HOM05D005537 ORTHO05D006776 3.8e-116 422.9 554 48.4
Ah.09g230210 Amaranthus hybridus HOM05D005537 ORTHO05D006776 1.9e-115 420.6 549 47.2
SHI03078 Sapria himalayana HOM05D005537 ORTHO05D006776 3.2e-115 419.9 547 47.9
Migut.K00238 Erythranthe guttata HOM05D005537 ORTHO05D006776 1.2e-114 417.9 544 48.0
MBI14_g19455_MAGBIO Magnolia biondii HOM05D005537 ORTHO05D006776 6.1e-114 415.6 494 53.8
SGA_v2.0_scaffold12G06075 Striga asiatica HOM05D005537 ORTHO05D006776 6.1e-114 415.6 554 50.2
CsaV3_2G008990 Cucumis sativus L. HOM05D005537 ORTHO05D006776 6.8e-113 412.1 387 58.9
SGA_v2.0_scaffold17G07935 Striga asiatica HOM05D005537 ORTHO05D006776 5.7e-112 409.1 554 45.1
AUR62021325 Chenopodium quinoa HOM05D005537 ORTHO05D006776 7.7e-109 398.7 544 44.3
Actinidia01575 Actinidia chinensis HOM05D005537 ORTHO05D006776 3.6e-106 389.8 544 45.4
CAN.G1186.23 Capsicum annuum HOM05D005537 ORTHO05D006776 3.6e-106 389.8 567 45.0
Psat2g005880 Pisum sativum HOM05D005537 ORTHO05D006776 9.8e-104 381.7 523 47.6
unitig_899.g15473 Utricularia gibba HOM05D005537 ORTHO05D006776 3.7e-103 379.8 547 45.0
C03p11680 Brassica napus HOM05D002335 ORTHO05D006282 3.1e-102 376.7 522 44.6
HPP92_018575 Vanilla planifolia HOM05D005537 ORTHO05D006776 1.3e-100 371.3 580 43.3
A03p10160 Brassica napus HOM05D005537 ORTHO05D006776 1.1e-99 368.2 502 44.8
Lju432C4G13 Lonicera japonica HOM05D005537 ORTHO05D006776 8.0e-98 362.1 471 47.1
TPR.G1254 Trifolium pratense HOM05D005537 ORTHO05D006776 1.2e-96 358.2 534 45.9
Psat2g005840 Pisum sativum HOM05D005537 ORTHO05D006776 1.9e-94 350.9 518 45.4
GSVIVG01029258001 Vitis vinifera HOM05D008207 ORTHO05D010373 1.1e-91 341.7 472 44.5
ATR0580G047 Amborella trichopoda HOM05D005537 ORTHO05D006776 1.9e-91 340.9 678 37.3
Os04g0658600 Oryza sativa ssp. japonica HOM05D005537 ORTHO05D006776 5.6e-91 339.3 544 41.2
SEGI_41129 Sequoiadendron giganteum HOM05D005537 ORTHO05D006776 4.7e-90 336.3 628 37.9
Zm00001eb067650 Zea mays HOM05D005537 ORTHO05D006776 2.1e-85 320.9 546 40.7
BcaB01g04778 Brassica carinata HOM05D005537 ORTHO05D006776 3.0e-76 290.4 519 38.0
AUR62033242 Chenopodium quinoa HOM05D008207 ORTHO05D010373 1.1e-73 282.0 424 42.0
Mapoly0006s0254 Marchantia polymorpha HOM05D005537 ORTHO05D006776 3.4e-72 276.9 605 35.7
SEGI_27163 Sequoiadendron giganteum HOM05D005537 ORTHO05D006776 1.0e-68 265.4 547 34.4
BraA03t10326Z Brassica rapa HOM05D005537 ORTHO05D006776 6.2e-66 256.1 210 61.0
unitig_746.g26559 Utricularia gibba HOM05D005537 ORTHO05D006776 2.9e-63 247.3 265 49.4
EL10Ac8g18309 Beta vulgaris HOM05D005537 ORTHO05D006776 4.6e-61 240.0 413 43.6
Pp3c12_970 Physcomitrium patens HOM05D005537 ORTHO05D006776 2.5e-59 234.2 650 30.5
Zm00001eb432550 Zea mays HOM05D005537 ORTHO05D006776 2.1e-58 231.1 470 37.0
AagrBONN_evm.TU.Sc2ySwM_228.2028 Anthoceros agrestis HOM05D005537 ORTHO05D006776 1.3e-55 221.9 650 29.8
SMO012G0033 Selaginella moellendorffii HOM05D005537 ORTHO05D006776 2.7e-53 214.2 538 31.2
Pp3c17_1280 Physcomitrium patens HOM05D005537 ORTHO05D006776 1.5e-51 208.4 403 33.5
MELO3C020712.2 Cucumis melo HOM05D005537 ORTHO05D006776 2.8e-50 204.1 169 60.9
SEGI_03037 Sequoiadendron giganteum HOM05D005537 ORTHO05D006776 1.5e-40 171.8 546 28.9
FvH4_5g34681 Fragaria vesca HOM05D005537 ORTHO05D006776 7.9e-37 159.5 136 61.8
SMO172G0175 Selaginella moellendorffii HOM05D005537 ORTHO05D006776 1.8e-36 158.3 476 28.4
Cc00_g32040 Coffea canephora HOM05D005537 ORTHO05D006776 3.9e-36 157.1 142 57.0
Glyma.17G055832 Glycine max HOM05D005537 ORTHO05D006776 1.9e-35 154.8 133 65.4
CBR_g32208 Chara braunii HOM05D005537 ORTHO05D006776 4.3e-35 153.7 289 33.2
FvH4_2g25020 Fragaria vesca HOM05D005537 ORTHO05D006776 3.8e-31 140.6 88 75.0
FAN24G0683 Fragaria x ananassa HOM05D005537 ORTHO05D006776 3.8e-31 140.6 88 75.0
Cre01.g019200 Chlamydomonas reinhardtii HOM05D005537 ORTHO05D006776 8.5e-31 139.4 273 31.9
Oeu009853.2 Olea europaea HOM05D005537 ORTHO05D006776 2.0e-27 128.3 149 53.0
PRCOL_00002161 Prasinoderma coloniale HOM05D005537 ORTHO05D006776 3.8e-23 114.0 201 36.8
MCO12G389 Micromonas commoda HOM05D005537 ORTHO05D006776 2.2e-18 98.2 168 35.7
unitig_746.g26560 Utricularia gibba HOM05D005537 ORTHO05D006776 7.7e-16 89.7 123 50.4
MSTRG.6231 Avicennia marina HOM05D005537 ORTHO05D006776 5.3e-09 67.0 79 46.8
FAN25G2196 Fragaria x ananassa HOM05D015922 ORTHO05D014694 1.1e-06 59.3 84 45.2
SGA_v2.0_scaffold522G52710 Striga asiatica HOM05D003781 ORTHO05D004299 3.2e-06 57.8 110 35.5


User provided reference genes

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