Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.1G069400 Prunus persica HOM05D004769 ORTHO05D005605 7.7e-202 707.2 433 100.0
FvH4_4g06670 Fragaria vesca HOM05D004769 ORTHO05D005605 1.5e-168 596.7 433 82.9
RcHm_v2.0_Chr4g0398571 Rosa chinensis HOM05D004769 ORTHO05D005605 1.5e-168 596.7 433 83.1
MD16G1242400 Malus domestica HOM05D004769 ORTHO05D005605 3.3e-168 595.5 414 90.3
MD13G1237000 Malus domestica HOM05D004769 ORTHO05D005605 1.9e-163 579.7 424 85.4
FAN07G0829 Fragaria x ananassa HOM05D004769 ORTHO05D005605 7.0e-163 577.8 419 84.7
FAN17G2568 Fragaria x ananassa HOM05D004769 ORTHO05D005605 2.1e-159 566.2 421 81.9
FAN12G3741 Fragaria x ananassa HOM05D004769 ORTHO05D005605 3.6e-159 565.5 423 82.0
FAN22G0974 Fragaria x ananassa HOM05D004769 ORTHO05D005605 1.4e-158 563.5 421 82.4
CiPaw.03G077600 Carya illinoinensis HOM05D004769 ORTHO05D005605 5.2e-158 561.6 450 81.8
CANSAT78G2338 Cannabis sativa HOM05D004769 ORTHO05D005605 3.7e-156 555.4 442 81.2
Haze_14305 Corylus avellana HOM05D004769 ORTHO05D005605 8.6e-153 544.3 442 81.4
Potri.004G075700 Populus trichocarpa HOM05D004769 ORTHO05D005605 3.3e-152 542.3 438 76.5
Sabra04G0050400 Salix brachista HOM05D004769 ORTHO05D005605 1.1e-150 537.3 447 75.6
Potri.017G144121 Populus trichocarpa HOM05D004769 ORTHO05D005605 5.8e-149 531.6 439 77.0
GSVIVG01026312001 Vitis vinifera HOM05D004769 ORTHO05D005605 2.9e-148 529.3 438 75.1
Ca_05772_v3 Cicer arietinum L. HOM05D004769 ORTHO05D005605 1.4e-147 526.9 435 68.0
Cfa007768 Carpinus fangiana HOM05D004769 ORTHO05D005605 1.2e-146 523.9 446 79.1
Cpa.g.sc178.7 Carica papaya HOM05D004769 ORTHO05D005605 2.7e-146 522.7 462 76.2
Thecc.04G060900 Theobroma cacao HOM05D004769 ORTHO05D005605 7.8e-146 521.2 449 78.0
QL02p060102 Quercus lobata HOM05D004769 ORTHO05D005605 3.0e-145 519.2 529 69.9
Atru.chr1.1954 Acer truncatum HOM05D004769 ORTHO05D005605 4.3e-144 515.4 440 73.9
PGR042G1215 Punica granatum HOM05D004769 ORTHO05D005605 3.6e-143 512.3 441 78.9
TWI74G1557 Tripterygium wilfordii HOM05D004769 ORTHO05D005605 6.2e-143 511.5 447 73.8
TAR375G0174 Trochodendron aralioides HOM05D004769 ORTHO05D005605 1.4e-142 510.4 450 66.9
Lalb_Chr17g0345901 Lupinus albus HOM05D004769 ORTHO05D005605 6.4e-140 501.5 448 75.4
ClCG01G008650 Citrullus lanatus HOM05D004769 ORTHO05D005605 3.2e-139 499.2 446 77.1
Medtr5g077180 Medicago truncatula HOM05D004769 ORTHO05D005605 9.2e-139 497.7 439 76.1
Glyma.02G241900 Glycine max HOM05D004769 ORTHO05D005605 1.2e-138 497.3 490 70.0
Dinv19070 Davidia involucrata HOM05D004769 ORTHO05D005605 1.6e-138 496.9 437 71.9
Hma1.2p1_0158F.1_g069800 Hydrangea macrophylla HOM05D004769 ORTHO05D005605 1.6e-138 496.9 438 68.5
Sc11g0004750 Simmondsia chinensis HOM05D004769 ORTHO05D005605 2.7e-138 496.1 437 74.6
Phvul.008G239200 Phaseolus vulgaris HOM05D004769 ORTHO05D005605 1.0e-137 494.2 442 77.1
Glyma.14G211600 Glycine max HOM05D004769 ORTHO05D005605 1.3e-137 493.8 449 76.6
VMungo0647G0921 Vigna mungo HOM05D004769 ORTHO05D005605 1.3e-137 493.8 452 75.7
Actinidia35715 Actinidia chinensis HOM05D004769 ORTHO05D005605 3.9e-137 492.3 439 72.7
Sed0006929 Sechium edule HOM05D004769 ORTHO05D005605 1.5e-136 490.3 449 73.9
TWI77G0470 Tripterygium wilfordii HOM05D004769 ORTHO05D005605 3.3e-136 489.2 439 73.8
MBI04_g35346_MAGBIO Magnolia biondii HOM05D004769 ORTHO05D005605 1.3e-135 487.3 434 75.1
MELO3C025080.2 Cucumis melo HOM05D004769 ORTHO05D005605 1.6e-135 486.9 495 69.3
TAR374G1377 Trochodendron aralioides HOM05D004769 ORTHO05D005605 1.6e-135 486.9 451 74.7
Lj4A255T24 Lonicera japonica HOM05D004769 ORTHO05D005605 4.8e-135 485.3 435 67.6
CsaV3_5G020660 Cucumis sativus L. HOM05D004769 ORTHO05D005605 4.0e-134 482.3 445 75.3
Aqoxy5G00268 Aquilegia oxysepala HOM05D004769 ORTHO05D005605 1.2e-133 480.7 455 65.9
Cc07_g12960 Coffea canephora HOM05D004769 ORTHO05D005605 1.5e-133 480.3 437 68.9
Lsat_1_v5_gn_8_18601 Lactuca sativa HOM05D004769 ORTHO05D005605 2.0e-133 479.9 426 67.4
TPR.G9995 Trifolium pratense HOM05D004769 ORTHO05D005605 4.4e-133 478.8 445 72.4
Gorai.004G064700 Gossypium raimondii HOM05D004769 ORTHO05D005605 6.4e-132 474.9 447 72.3
ECA233G3826 Erigeron canadensis HOM05D000002 ORTHO05D000001 8.4e-132 474.6 417 71.9
Gohir.D08G062500 Gossypium hirsutum HOM05D004769 ORTHO05D005605 8.4e-132 474.6 448 72.1
EL10Ac6g13916 Beta vulgaris HOM05D004769 ORTHO05D005605 1.1e-131 474.2 476 65.5
Gohir.A08G052900 Gossypium hirsutum HOM05D004769 ORTHO05D005605 3.5e-130 469.2 438 73.3
PSO017G5633 Papaver somniferum HOM05D004769 ORTHO05D005605 1.7e-129 466.8 452 71.5
ATR0083G043 Amborella trichopoda HOM05D004769 ORTHO05D005605 3.9e-129 465.7 436 67.4
arahy.Tifrunner.gnm1.ann1.SAK0JK Arachis hypogaea HOM05D004769 ORTHO05D005605 8.7e-129 464.5 475 69.9
COL.COLO4_05842 Corchorus olitorius HOM05D004769 ORTHO05D005605 5.6e-128 461.8 433 58.9
Hma1.2p1_0034F.1_g021310 Hydrangea macrophylla HOM05D004769 ORTHO05D005605 7.3e-128 461.5 415 74.7
Lalb_Chr04g0251441 Lupinus albus HOM05D004769 ORTHO05D005605 9.6e-128 461.1 432 73.1
HanXRQChr08g0218471 Helianthus annuus HOM05D004769 ORTHO05D005605 3.6e-127 459.1 432 70.1
Nn1g02020 Nelumbo nucifera HOM05D004769 ORTHO05D005605 4.8e-127 458.8 430 73.5
AUR62017457 Chenopodium quinoa HOM05D004769 ORTHO05D005605 6.2e-127 458.4 419 63.5
CSS0001926 Camellia sinensis var. sinensis HOM05D004769 ORTHO05D005605 4.0e-126 455.7 266 85.0
Os05g0178900 Oryza sativa ssp. japonica HOM05D004769 ORTHO05D005605 6.9e-126 454.9 442 68.3
Ah.02g128700 Amaranthus hybridus HOM05D004769 ORTHO05D005605 2.0e-125 453.4 508 63.0
THA.LOC104823824 Tarenaya hassleriana HOM05D004769 ORTHO05D005605 1.7e-124 450.3 440 69.1
Nitab4.5_0000574g0160 Nicotiana tabacum HOM05D004769 ORTHO05D005605 6.4e-124 448.4 438 71.5
Peaxi162Scf00442g00627 Petunia axillaris HOM05D004769 ORTHO05D005605 9.3e-123 444.5 437 70.3
MSTRG.3686 Avicennia marina HOM05D004769 ORTHO05D005605 1.2e-122 444.1 432 70.8
Rhsim10G0183300 Rhododendron simsii HOM05D004769 ORTHO05D005605 6.0e-122 441.8 433 70.0
HPP92_017811 Vanilla planifolia HOM05D004769 ORTHO05D005605 6.0e-122 441.8 447 62.2
Lj2C513G15 Lonicera japonica HOM05D004769 ORTHO05D005605 1.8e-121 440.3 426 57.7
SHI30114 Sapria himalayana HOM05D002544 ORTHO05D007856 1.8e-121 440.3 251 85.3
AUR62032521 Chenopodium quinoa HOM05D004769 ORTHO05D005605 5.1e-121 438.7 414 58.7
CAN.G525.4 Capsicum annuum HOM05D004769 ORTHO05D005605 1.3e-119 434.1 438 69.4
PGSC0003DMG400023617 Solanum tuberosum HOM05D004769 ORTHO05D005605 2.8e-119 433.0 444 67.6
Sopen04g006720 Solanum pennellii HOM05D004769 ORTHO05D005605 3.7e-119 432.6 439 70.2
BolC4t25993H Brassica oleracea HOM05D004769 ORTHO05D005605 1.8e-118 430.3 441 63.9
Migut.H02243 Erythranthe guttata HOM05D004769 ORTHO05D005605 3.1e-118 429.5 439 64.2
Sp7g05100 Schrenkiella parvula HOM05D004769 ORTHO05D005605 4.0e-118 429.1 432 60.4
Thhalv10027788m.g Eutrema salsugineum HOM05D004769 ORTHO05D005605 9.0e-118 427.9 435 68.3
Solyc04g014560.4 Solanum lycopersicum HOM05D004769 ORTHO05D005605 9.0e-118 427.9 446 68.4
Zm00001eb377290 Zea mays HOM05D004769 ORTHO05D005605 3.4e-117 426.0 453 53.0
C04p44180 Brassica napus HOM05D004769 ORTHO05D005605 4.5e-117 425.6 441 63.9
vmacro20487 Vaccinium macrocarpon HOM05D004769 ORTHO05D005605 5.8e-117 425.2 433 67.2
DCAR_028435 Daucus carota HOM05D004769 ORTHO05D005605 7.6e-117 424.9 258 82.6
Carub.0007s3249 Capsella rubella HOM05D004769 ORTHO05D005605 1.3e-116 424.1 439 69.7
Oeu032315.1 Olea europaea HOM05D004769 ORTHO05D005605 2.9e-116 422.9 505 58.4
AL7G46000 Arabidopsis lyrata HOM05D004769 ORTHO05D005605 3.8e-116 422.5 435 66.0
LjContig00141g0012428 Lotus japonicus HOM05D004769 ORTHO05D005605 1.4e-115 420.6 483 52.8
Oeu029083.1 Olea europaea HOM05D004769 ORTHO05D005605 2.1e-114 416.8 510 57.8
BcaC02g09560 Brassica carinata HOM05D004769 ORTHO05D005605 2.3e-113 413.3 441 62.6
SGA_v2.0_scaffold45G17131 Striga asiatica HOM05D004769 ORTHO05D005605 5.1e-113 412.1 432 60.2
A04p10540 Brassica napus HOM05D004769 ORTHO05D005605 4.3e-112 409.1 435 64.6
SGA_v2.0_scaffold115G32089 Striga asiatica HOM05D004769 ORTHO05D005605 1.1e-110 404.4 432 66.2
BraA04t16720Z Brassica rapa HOM05D004769 ORTHO05D005605 4.0e-110 402.5 435 63.2
MapolyY_B0025 Marchantia polymorpha HOM05D004769 ORTHO05D005605 4.0e-110 402.5 261 74.3
unitig_748.g7024 Utricularia gibba HOM05D004769 ORTHO05D005605 2.0e-109 400.2 250 79.2
Mapoly0017s0020 Marchantia polymorpha HOM05D004769 ORTHO05D005605 5.8e-109 398.7 226 83.2
Eucgr.J01630 Eucalyptus grandis HOM05D004769 ORTHO05D005605 1.0e-108 397.9 410 68.0
Pp3c14_14980 Physcomitrium patens HOM05D004769 ORTHO05D005605 2.9e-108 396.4 228 79.8
Pp3c14_14989 Physcomitrium patens HOM05D004769 ORTHO05D005605 2.9e-108 396.4 228 79.8
SMO351G0501 Selaginella moellendorffii HOM05D004769 ORTHO05D005605 5.5e-107 392.1 229 79.9
Migut.K01113 Erythranthe guttata HOM05D004769 ORTHO05D005605 8.7e-105 384.8 228 79.8
CBR_g22246 Chara braunii HOM05D004769 ORTHO05D005605 2.4e-102 376.7 231 77.5
PSO170G3102 Papaver somniferum HOM05D004769 ORTHO05D005605 4.2e-99 365.9 392 68.4
CARHR215720 Cardamine hirsuta HOM05D004769 ORTHO05D005605 1.3e-95 354.4 391 64.7
CDE02G3274 Ceratophyllum demersum HOM05D004769 ORTHO05D005605 1.1e-83 314.7 155 91.6
Dinv28230 Davidia involucrata HOM05D004769 ORTHO05D005605 3.0e-81 306.6 343 63.8
Lalb_Chr10g0104091 Lupinus albus HOM05D004769 ORTHO05D005605 5.7e-80 302.4 149 91.3
Pp3c17_5870 Physcomitrium patens HOM05D004769 ORTHO05D005605 7.4e-80 302.0 210 71.4
Ciclev10015797m.g Citrus clementina HOM05D004769 ORTHO05D005605 2.0e-77 293.9 347 69.5
Sed0026946 Sechium edule HOM05D004769 ORTHO05D005605 8.5e-76 288.5 347 71.2
Duzib211G0206 Durio zibethinus HOM05D004769 ORTHO05D005605 9.8e-72 275.0 330 73.0
CDE02G0598 Ceratophyllum demersum HOM05D004769 ORTHO05D005605 8.3e-71 271.9 137 88.3
Manes.02G080000 Manihot esculenta HOM05D004769 ORTHO05D005605 2.9e-68 263.5 319 71.5
Nitab4.5_0005193g0040 Nicotiana tabacum HOM05D004769 ORTHO05D005605 1.9e-67 260.8 343 66.2
Cre03.g178300 Chlamydomonas reinhardtii HOM05D004769 ORTHO05D005605 2.5e-67 260.4 212 61.8
Ciclev10018227m.g Citrus clementina HOM05D004769 ORTHO05D005605 5.5e-67 259.2 144 84.7
SEGI_40758 Sequoiadendron giganteum HOM05D004769 ORTHO05D005605 1.8e-65 254.2 146 83.6
FAN07G1815 Fragaria x ananassa HOM05D004769 ORTHO05D005605 2.9e-60 236.9 250 76.0
PRCOL_00000163 Prasinoderma coloniale HOM05D004769 ORTHO05D005605 1.9e-59 234.2 204 54.9
Lj1g0013060 Lotus japonicus HOM05D004769 ORTHO05D005605 3.3e-59 233.4 175 67.4
MCO07G113 Micromonas commoda HOM05D004769 ORTHO05D005605 4.2e-59 233.0 218 50.9
CDE02G1258 Ceratophyllum demersum HOM05D004769 ORTHO05D005605 3.6e-58 229.9 321 52.3
Zm00001eb283000 Zea mays HOM05D004769 ORTHO05D005605 8.0e-58 228.8 321 56.7
FAN05G2233 Fragaria x ananassa HOM05D004769 ORTHO05D005605 3.4e-56 223.4 255 73.7
Oeu048972.1 Olea europaea HOM05D004769 ORTHO05D005605 2.3e-52 210.7 112 84.8
Lalb_Chr10g0104101 Lupinus albus HOM05D004769 ORTHO05D005605 6.6e-52 209.1 300 64.7
Sed0001997 Sechium edule HOM05D004769 ORTHO05D005605 2.5e-51 207.2 102 92.2
SMO231G0026 Selaginella moellendorffii HOM05D004769 ORTHO05D005605 4.0e-49 199.9 195 57.9
Psat2g044720 Pisum sativum HOM05D004769 ORTHO05D005605 6.8e-49 199.1 297 68.0
CSS0045560 Camellia sinensis var. sinensis HOM05D004769 ORTHO05D005605 4.9e-47 193.0 96 89.6
Gohir.A02G124601 Gossypium hirsutum HOM05D004769 ORTHO05D005605 6.4e-47 192.6 97 92.8
AT5G37370 Arabidopsis thaliana HOM05D004769 ORTHO05D005605 7.0e-46 189.1 303 59.4
Aa31LG9G17630 Aethionema arabicum HOM05D004769 ORTHO05D005605 1.2e-42 178.3 96 85.4
SMO231G0020 Selaginella moellendorffii HOM05D004769 ORTHO05D005605 3.6e-42 176.8 129 65.1
Zm00001eb361740 Zea mays HOM05D004769 ORTHO05D005605 5.2e-41 172.9 97 81.4
Gohir.A11G193800 Gossypium hirsutum HOM05D004769 ORTHO05D005605 4.9e-39 166.4 86 90.7
Zm00001eb046660 Zea mays HOM05D004769 ORTHO05D005605 4.1e-38 163.3 84 86.9
Zm00001eb221230 Zea mays HOM05D004769 ORTHO05D005605 4.6e-37 159.8 83 85.5
HanXRQChr14g0429111 Helianthus annuus HOM05D004769 ORTHO05D005605 2.1e-34 151.0 80 90.0
MD01G1153700 Malus domestica HOM05D004769 ORTHO05D005605 4.0e-33 146.7 80 87.5
HanXRQChr14g0429051 Helianthus annuus HOM05D004769 ORTHO05D005605 8.9e-33 145.6 80 87.5
Gohir.A08G086562 Gossypium hirsutum HOM05D004769 ORTHO05D005605 1.0e-28 132.1 84 77.4
FAN23G0276 Fragaria x ananassa HOM05D004769 ORTHO05D005605 3.9e-28 130.2 114 76.3
CSS0036345 Camellia sinensis var. sinensis HOM05D004769 ORTHO05D005605 5.1e-28 129.8 287 55.4
ATR0127G005 Amborella trichopoda HOM05D004769 ORTHO05D005605 5.6e-27 126.3 77 80.5
Actinidia28787 Actinidia chinensis HOM05D004769 ORTHO05D005605 1.1e-25 122.1 317 46.7
CDE02G3573 Ceratophyllum demersum HOM05D004769 ORTHO05D005605 1.7e-23 114.8 85 70.6
Lj2g0009880 Lotus japonicus HOM05D004769 ORTHO05D005605 2.1e-21 107.8 74 67.6
HanXRQChr08g0224021 Helianthus annuus HOM05D004769 ORTHO05D005605 7.8e-21 105.9 60 85.0
Lj1g0013083 Lotus japonicus HOM05D004769 ORTHO05D005605 3.3e-19 100.5 68 66.2
SMO351G0097 Selaginella moellendorffii HOM05D007698 ORTHO05D009663 1.1e-14 85.5 61 63.9
Zm00001eb313200 Zea mays HOM05D004769 ORTHO05D005605 2.3e-12 77.8 43 83.7
AagrBONN_evm.TU.Sc2ySwM_344.2680 Anthoceros agrestis HOM05D004769 ORTHO05D005605 5.1e-12 76.6 253 51.0


User provided reference genes

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