Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.1G035300 Prunus persica HOM05D004349 ORTHO05D005097 1.0e-79 300.1 154 100.0
Prupe.7G086000 Prunus persica HOM05D004349 ORTHO05D005097 4.0e-60 235.0 133 91.7
Prupe.1G300700 Prunus persica HOM05D004349 ORTHO05D005097 5.7e-59 231.1 143 84.6
Prupe.7G024200 Prunus persica HOM05D004349 ORTHO05D005097 5.7e-59 231.1 135 87.4
Prupe.1G547000 Prunus persica HOM05D004349 ORTHO05D005097 9.8e-59 230.3 131 90.8
Prupe.3G021700 Prunus persica HOM05D004349 ORTHO05D005097 1.3e-58 229.9 143 83.9
MD14G1049500 Malus domestica HOM05D004349 ORTHO05D005097 2.4e-57 225.7 130 90.0
RcHm_v2.0_Chr4g0406251 Rosa chinensis HOM05D004349 ORTHO05D005097 4.6e-56 221.5 133 85.7
MD12G1050700 Malus domestica HOM05D004349 ORTHO05D005097 5.9e-56 221.1 130 88.5
FAN02G1450 Fragaria x ananassa HOM05D004349 ORTHO05D005097 7.8e-56 220.7 133 85.0
FvH4_6g21430 Fragaria vesca HOM05D004349 ORTHO05D005097 1.7e-55 219.5 133 85.0
FAN05G3233 Fragaria x ananassa HOM05D004349 ORTHO05D005097 1.7e-55 219.5 133 85.0
ECA240G0294 Erigeron canadensis HOM05D004349 ORTHO05D005097 2.3e-55 219.2 123 89.4
Nn2g15821 Nelumbo nucifera HOM05D004349 ORTHO05D005097 3.9e-55 218.4 123 89.4
Atru.chr8.1222 Acer truncatum HOM05D004349 ORTHO05D005097 5.0e-55 218.0 123 88.6
Dinv25025 Davidia involucrata HOM05D004349 ORTHO05D005097 5.0e-55 218.0 123 88.6
HanXRQChr01g0024771 Helianthus annuus HOM05D004349 ORTHO05D005097 5.0e-55 218.0 121 90.1
FAN05G0412 Fragaria x ananassa HOM05D004349 ORTHO05D005097 6.6e-55 217.6 133 84.2
Ciclev10012936m.g Citrus clementina HOM05D004349 ORTHO05D005097 8.6e-55 217.2 123 89.4
Prupe.1G181600 Prunus persica HOM05D004349 ORTHO05D005097 8.6e-55 217.2 144 81.9
COL.COLO4_29437 Corchorus olitorius HOM05D004349 ORTHO05D005097 1.1e-54 216.9 123 88.6
Nitab4.5_0001874g0080 Nicotiana tabacum HOM05D004349 ORTHO05D005097 1.5e-54 216.5 123 87.0
Cc09_g02100 Coffea canephora HOM05D004349 ORTHO05D005097 1.9e-54 216.1 123 87.0
TAR623G1044 Trochodendron aralioides HOM05D004349 ORTHO05D005097 2.5e-54 215.7 121 89.3
GSVIVG01033427001 Vitis vinifera HOM05D004349 ORTHO05D005097 2.5e-54 215.7 123 87.8
EL10Ac2g02766 Beta vulgaris HOM05D004349 ORTHO05D005097 3.3e-54 215.3 123 87.0
Peaxi162Scf00463g00127 Petunia axillaris HOM05D004349 ORTHO05D005097 5.6e-54 214.5 123 87.0
Potri.016G062800 Populus trichocarpa HOM05D004349 ORTHO05D005097 5.6e-54 214.5 122 87.7
Duzib093G0127 Durio zibethinus HOM05D004349 ORTHO05D005097 7.3e-54 214.2 123 87.8
Gohir.D11G331900 Gossypium hirsutum HOM05D004349 ORTHO05D005097 7.3e-54 214.2 123 87.0
Gorai.007G362800 Gossypium raimondii HOM05D004349 ORTHO05D005097 7.3e-54 214.2 123 87.0
HanXRQChr03g0090511 Helianthus annuus HOM05D004349 ORTHO05D005097 7.3e-54 214.2 121 88.4
Prupe.8G249100 Prunus persica HOM05D004349 ORTHO05D005097 7.3e-54 214.2 123 89.4
Hma1.2p1_0516F.1_g170550 Hydrangea macrophylla HOM05D004349 ORTHO05D005097 9.5e-54 213.8 123 86.2
Prupe.6G266300 Prunus persica HOM05D004349 ORTHO05D005097 9.5e-54 213.8 144 81.2
Solyc04g081430.3 Solanum lycopersicum HOM05D004349 ORTHO05D005097 9.5e-54 213.8 123 85.4
Sopen04g035040 Solanum pennellii HOM05D004349 ORTHO05D005097 9.5e-54 213.8 123 85.4
Actinidia01590 Actinidia chinensis HOM05D004349 ORTHO05D005097 1.6e-53 213.0 123 86.2
Cfa020113 Carpinus fangiana HOM05D004349 ORTHO05D005097 1.6e-53 213.0 123 87.8
Haze_20078 Corylus avellana HOM05D004349 ORTHO05D005097 1.6e-53 213.0 123 87.8
Aqoxy1G00443 Aquilegia oxysepala HOM05D004349 ORTHO05D005097 2.1e-53 212.6 123 86.2
QL11p005722 Quercus lobata HOM05D004349 ORTHO05D005097 2.1e-53 212.6 123 87.0
CiPaw.09G026100 Carya illinoinensis HOM05D004349 ORTHO05D005097 2.8e-53 212.2 123 85.4
HPP92_026048 Vanilla planifolia HOM05D004349 ORTHO05D005097 2.8e-53 212.2 123 87.0
MBI18_g03872_MAGBIO Magnolia biondii HOM05D004349 ORTHO05D005097 4.7e-53 211.5 123 86.2
PSO528G0119 Papaver somniferum HOM05D004349 ORTHO05D005097 4.7e-53 211.5 123 85.4
MSTRG.10496 Avicennia marina HOM05D004349 ORTHO05D005097 8.0e-53 210.7 123 86.2
QL05p072253 Quercus lobata HOM05D004349 ORTHO05D005097 1.4e-52 209.9 123 85.4
TWI74G1533 Tripterygium wilfordii HOM05D004349 ORTHO05D005097 1.4e-52 209.9 123 86.2
TWI77G0543 Tripterygium wilfordii HOM05D004349 ORTHO05D005097 1.4e-52 209.9 123 86.2
CSS0044984 Camellia sinensis var. sinensis HOM05D004349 ORTHO05D005097 1.8e-52 209.5 123 84.6
CANSAT54G2032 Cannabis sativa HOM05D004349 ORTHO05D005097 1.8e-52 209.5 123 87.0
ClCG10G017820 Citrullus lanatus HOM05D004349 ORTHO05D005097 1.8e-52 209.5 123 86.2
Migut.L01584 Erythranthe guttata HOM05D004349 ORTHO05D005097 1.8e-52 209.5 122 85.2
PSO170G4263 Papaver somniferum HOM05D004349 ORTHO05D005097 2.3e-52 209.1 123 84.6
Sed0001935 Sechium edule HOM05D004349 ORTHO05D005097 2.3e-52 209.1 123 85.4
Manes.08G039900 Manihot esculenta HOM05D004349 ORTHO05D005097 3.1e-52 208.8 123 83.7
SGA_v2.0_scaffold21G09532 Striga asiatica HOM05D004349 ORTHO05D005097 4.0e-52 208.4 143 75.5
MELO3C009592.2 Cucumis melo HOM05D004349 ORTHO05D005097 5.2e-52 208.0 123 84.6
CsaV3_7G005510 Cucumis sativus L. HOM05D004349 ORTHO05D005097 5.2e-52 208.0 123 84.6
Sed0019694 Sechium edule HOM05D004349 ORTHO05D005097 6.8e-52 207.6 123 85.4
HPP92_013495 Vanilla planifolia HOM05D004349 ORTHO05D005097 6.8e-52 207.6 123 86.2
Cpa.g.sc85.16 Carica papaya HOM05D004349 ORTHO05D005097 8.9e-52 207.2 119 87.4
FAN09G4703 Fragaria x ananassa HOM05D004349 ORTHO05D005097 8.9e-52 207.2 150 74.7
Rhsim04G0092200 Rhododendron simsii HOM05D004349 ORTHO05D005097 8.9e-52 207.2 123 83.7
Rhsim04G0092400 Rhododendron simsii HOM05D004349 ORTHO05D005097 8.9e-52 207.2 123 83.7
Rhsim10G0130900 Rhododendron simsii HOM05D004349 ORTHO05D005097 8.9e-52 207.2 126 82.5
ECA248G3305 Erigeron canadensis HOM05D004349 ORTHO05D005097 1.5e-51 206.5 124 83.9
FAN14G0676 Fragaria x ananassa HOM05D004349 ORTHO05D005097 1.5e-51 206.5 150 74.7
FAN14G3215 Fragaria x ananassa HOM05D004349 ORTHO05D005097 1.5e-51 206.5 150 74.7
CDE02G3593 Ceratophyllum demersum HOM05D000001 ORTHO05D000424 2.6e-51 205.7 123 83.7
unitig_37.g12649 Utricularia gibba HOM05D006346 ORTHO05D007910 4.4e-51 204.9 123 82.9
Ah.13g075520 Amaranthus hybridus HOM05D004349 ORTHO05D005097 1.3e-50 203.4 123 82.9
Phvul.010G156700 Phaseolus vulgaris HOM05D004349 ORTHO05D005097 6.4e-50 201.1 123 81.3
LjContig00564g0000037 Lotus japonicus HOM05D004349 ORTHO05D005097 8.3e-50 200.7 123 82.1
TPR.G11586 Trifolium pratense HOM05D004349 ORTHO05D005097 8.3e-50 200.7 122 82.8
arahy.Tifrunner.gnm1.ann1.9IE653 Arachis hypogaea HOM05D004349 ORTHO05D005097 1.1e-49 200.3 124 79.8
DCAR_018883 Daucus carota HOM05D004349 ORTHO05D005097 1.1e-49 200.3 136 76.5
Psat5g280400 Pisum sativum HOM05D004349 ORTHO05D005097 1.1e-49 200.3 123 81.3
PGSC0003DMG401009863 Solanum tuberosum HOM05D004349 ORTHO05D005097 1.1e-49 200.3 140 74.3
Glyma.07G029300 Glycine max HOM05D004349 ORTHO05D005097 1.4e-49 199.9 123 80.5
Os04g0661800 Oryza sativa ssp. japonica HOM05D004349 ORTHO05D005097 1.4e-49 199.9 123 82.9
THA.LOC104821832 Tarenaya hassleriana HOM05D004349 ORTHO05D005097 1.4e-49 199.9 123 80.5
Ca_01401_v3 Cicer arietinum L. HOM05D004349 ORTHO05D005097 1.9e-49 199.5 123 79.7
Dinv24030 Davidia involucrata HOM05D004349 ORTHO05D005097 1.9e-49 199.5 121 83.5
arahy.Tifrunner.gnm1.ann1.FMT65J Arachis hypogaea HOM05D004349 ORTHO05D005097 2.4e-49 199.1 124 79.0
Glyma.08G213500 Glycine max HOM05D004349 ORTHO05D005097 3.2e-49 198.7 123 79.7
arahy.Tifrunner.gnm1.ann1.2RRL5Q Arachis hypogaea HOM05D004349 ORTHO05D005097 4.1e-49 198.4 123 79.7
Medtr6g471120 Medicago truncatula HOM05D004349 ORTHO05D005097 5.4e-49 198.0 123 80.5
Medtr2g094720 Medicago truncatula HOM05D004349 ORTHO05D005097 1.6e-48 196.4 123 79.7
Nitab4.5_0000571g0040 Nicotiana tabacum HOM05D004349 ORTHO05D005097 1.6e-48 196.4 146 72.6
ATR0564G039 Amborella trichopoda HOM05D004349 ORTHO05D005097 2.7e-48 195.7 159 66.7
Hund26707 Selenicereus undatus HOM05D004349 ORTHO05D005097 3.5e-48 195.3 161 66.5
SEGI_10501 Sequoiadendron giganteum HOM05D004349 ORTHO05D005097 6.0e-48 194.5 123 78.0
Aa31LG1G21860 Aethionema arabicum HOM05D004349 ORTHO05D005097 2.3e-47 192.6 123 78.0
CARHR210130 Cardamine hirsuta HOM05D004349 ORTHO05D005097 2.3e-47 192.6 123 78.0
Thhalv10021663m.g Eutrema salsugineum HOM05D004349 ORTHO05D005097 2.3e-47 192.6 123 78.0
Sabra06G0151800 Salix brachista HOM05D004349 ORTHO05D005097 2.3e-47 192.6 107 88.8
Sp6g39510 Schrenkiella parvula HOM05D004349 ORTHO05D005097 2.3e-47 192.6 123 78.0
Eucgr.A02508 Eucalyptus grandis HOM05D004349 ORTHO05D005097 3.9e-47 191.8 106 89.6
Lalb_Chr23g0277751 Lupinus albus HOM05D004349 ORTHO05D005097 3.9e-47 191.8 123 76.4
TPR.G23269 Trifolium pratense HOM05D004349 ORTHO05D005097 3.9e-47 191.8 123 75.6
AL3G38450 Arabidopsis lyrata HOM05D004349 ORTHO05D005097 5.0e-47 191.4 123 77.2
AL6G12940 Arabidopsis lyrata HOM05D004349 ORTHO05D005097 5.0e-47 191.4 123 77.2
BcaC03g13019 Brassica carinata HOM05D004349 ORTHO05D005097 5.0e-47 191.4 123 78.0
BolC2t06089H Brassica oleracea HOM05D004349 ORTHO05D005097 5.0e-47 191.4 123 78.0
TAR623G0936 Trochodendron aralioides HOM05D004349 ORTHO05D005097 5.0e-47 191.4 106 88.7
Zm00001eb067450 Zea mays HOM05D004349 ORTHO05D005097 5.0e-47 191.4 127 75.6
ATR0580G353 Amborella trichopoda HOM05D004349 ORTHO05D005097 6.6e-47 191.0 105 87.6
AL6G12510 Arabidopsis lyrata HOM05D004349 ORTHO05D005097 6.6e-47 191.0 123 77.2
Carub.0006s0201 Capsella rubella HOM05D004349 ORTHO05D005097 8.6e-47 190.7 123 76.4
Lj2C360G6 Lonicera japonica HOM05D004349 ORTHO05D005097 8.6e-47 190.7 106 89.6
Thecc.05G180500 Theobroma cacao HOM05D004349 ORTHO05D005097 8.6e-47 190.7 106 88.7
Zm00001eb432780 Zea mays HOM05D004349 ORTHO05D005097 8.6e-47 190.7 123 78.0
Thhalv10014853m.g Eutrema salsugineum HOM05D004349 ORTHO05D005097 1.5e-46 189.9 123 77.2
Carub.0006s2456 Capsella rubella HOM05D004349 ORTHO05D005097 1.9e-46 189.5 124 78.2
AUR62015286 Chenopodium quinoa HOM05D004349 ORTHO05D005097 1.9e-46 189.5 106 87.7
AT5G03500 Arabidopsis thaliana HOM05D004349 ORTHO05D005097 4.3e-46 188.3 123 76.4
AT5G03220 Arabidopsis thaliana HOM05D004349 ORTHO05D005097 5.6e-46 188.0 118 78.8
SHI30021 Sapria himalayana HOM05D004349 ORTHO05D005097 9.5e-46 187.2 123 75.6
CARHR040500 Cardamine hirsuta HOM05D004349 ORTHO05D005097 2.1e-45 186.0 123 74.8
Lalb_Chr19g0125421 Lupinus albus HOM05D004349 ORTHO05D005097 2.8e-45 185.7 123 71.5
Lsat_1_v5_gn_1_58740 Lactuca sativa HOM05D004349 ORTHO05D005097 4.7e-45 184.9 102 89.2
BcaNung06685 Brassica carinata HOM05D004349 ORTHO05D005097 6.2e-45 184.5 141 68.1
BolC9t60086H Brassica oleracea HOM05D004349 ORTHO05D005097 3.1e-44 182.2 126 73.0
Gohir.A11G314900 Gossypium hirsutum HOM05D004349 ORTHO05D005097 8.9e-44 180.6 100 89.0
Mapoly0052s0099 Marchantia polymorpha HOM05D004349 ORTHO05D005097 8.9e-44 180.6 123 69.9
VMungo0331G0313 Vigna mungo HOM05D004349 ORTHO05D005097 2.0e-43 179.5 105 83.8
SMO340G0091 Selaginella moellendorffii HOM05D004349 ORTHO05D005097 1.3e-42 176.8 124 69.4
BraA02t04750Z Brassica rapa HOM05D004349 ORTHO05D005097 8.3e-42 174.1 119 73.1
A10p32710 Brassica napus HOM05D004349 ORTHO05D005097 2.4e-41 172.6 106 78.3
C02p00910 Brassica napus HOM05D004349 ORTHO05D005097 2.4e-41 172.6 106 80.2
SMO358G0681 Selaginella moellendorffii HOM05D004349 ORTHO05D005097 2.4e-41 172.6 123 69.1
RcHm_v2.0_Chr3g0478001 Rosa chinensis HOM05D004349 ORTHO05D005097 5.4e-41 171.4 106 82.1
Prupe.2G085900 Prunus persica HOM05D004349 ORTHO05D005097 9.2e-41 170.6 94 89.4
vmacro17893 Vaccinium macrocarpon HOM05D004349 ORTHO05D005097 3.5e-40 168.7 194 51.5
CBR_g46752 Chara braunii HOM05D004349 ORTHO05D005097 6.0e-40 167.9 116 67.2
BraA10t45308Z Brassica rapa HOM05D004349 ORTHO05D005097 7.8e-40 167.5 106 76.4
C09p73550 Brassica napus HOM05D004349 ORTHO05D005097 1.5e-38 163.3 103 77.7
FAN05G0350 Fragaria x ananassa HOM05D004349 ORTHO05D005097 3.3e-38 162.2 104 83.7
arahy.Tifrunner.gnm1.ann1.UX8DIM Arachis hypogaea HOM05D004349 ORTHO05D005097 4.0e-36 155.2 122 68.0
PGR004G2245 Punica granatum HOM05D004349 ORTHO05D005097 2.0e-35 152.9 83 84.3
Sc13g0002530 Simmondsia chinensis HOM05D004349 ORTHO05D005097 4.4e-35 151.8 79 91.1
CAN.G311.28 Capsicum annuum HOM05D004349 ORTHO05D005097 9.9e-35 150.6 81 86.4
CSS0033717 Camellia sinensis var. sinensis HOM05D004349 ORTHO05D005097 8.4e-34 147.5 97 76.3
Sabra16G0064800 Salix brachista HOM05D004349 ORTHO05D005097 2.7e-32 142.5 83 86.7
Pp3c5_20850 Physcomitrium patens HOM05D004349 ORTHO05D005097 2.8e-29 132.5 112 60.7
AagrBONN_evm.TU.Sc2ySwM_117.2767 Anthoceros agrestis HOM05D004349 ORTHO05D005097 4.4e-27 125.2 102 63.7
AagrBONN_evm.TU.Sc2ySwM_362.1623 Anthoceros agrestis HOM05D004349 ORTHO05D005097 4.4e-27 125.2 97 66.0
Rhsim04G0093300 Rhododendron simsii HOM05D004349 ORTHO05D005097 4.9e-26 121.7 73 86.3
CARHR099790 Cardamine hirsuta HOM05D004349 ORTHO05D005097 4.2e-25 118.6 82 70.7
RcHm_v2.0_Chr3g0478061 Rosa chinensis HOM05D004349 ORTHO05D005097 1.0e-23 114.0 103 60.2
CARHR251030 Cardamine hirsuta HOM05D004349 ORTHO05D005097 3.6e-21 105.5 71 70.4
CARHR218030 Cardamine hirsuta HOM05D004349 ORTHO05D005097 1.1e-17 94.0 63 71.4
CARHR258920 Cardamine hirsuta HOM05D004349 ORTHO05D005097 4.6e-16 88.6 65 69.2
Oeu057599.1 Olea europaea HOM05D004349 ORTHO05D005097 7.9e-16 87.8 47 80.9
RcHm_v2.0_Chr3g0478211 Rosa chinensis HOM05D004349 ORTHO05D005097 7.3e-14 81.3 49 85.7
RcHm_v2.0_Chr3g0478341 Rosa chinensis HOM05D004349 ORTHO05D005097 7.3e-14 81.3 49 85.7
PRCOL_00002553 Prasinoderma coloniale HOM05D004349 ORTHO05D005097 2.4e-12 76.3 114 38.6
RcHm_v2.0_Chr3g0478621 Rosa chinensis HOM05D004349 ORTHO05D005097 6.9e-12 74.7 112 46.4
MCO10G402 Micromonas commoda HOM05D004349 ORTHO05D005097 1.2e-11 73.9 116 36.2
Cre01.g062902 Chlamydomonas reinhardtii HOM05D004349 ORTHO05D005097 4.2e-09 65.5 98 39.8


User provided reference genes

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