Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.1G032600 Prunus persica HOM05D003838 ORTHO05D004444 2.5e-107 392.1 199 100.0
Prupe.3G140200 Prunus persica HOM05D003838 ORTHO05D004444 1.1e-81 307.0 198 78.3
MD13G1208600 Malus domestica HOM05D003838 ORTHO05D004444 3.4e-72 275.4 199 69.3
Cfa015168 Carpinus fangiana HOM05D003838 ORTHO05D004444 3.6e-69 265.4 195 66.2
Ciclev10022331m.g Citrus clementina HOM05D003838 ORTHO05D004444 4.6e-69 265.0 197 67.5
Hma1.2p1_0002F.1_g002170 Hydrangea macrophylla HOM05D003838 ORTHO05D004444 3.0e-68 262.3 193 68.4
Haze_01511 Corylus avellana HOM05D003838 ORTHO05D004444 6.7e-68 261.2 184 68.5
Duzib212G0889 Durio zibethinus HOM05D003838 ORTHO05D004444 8.7e-68 260.8 192 65.1
Potri.017G030000 Populus trichocarpa HOM05D003838 ORTHO05D004444 1.9e-67 259.6 195 66.2
TAR376G0719 Trochodendron aralioides HOM05D003838 ORTHO05D004444 5.7e-67 258.1 200 64.5
TAR629G1244 Trochodendron aralioides HOM05D003838 ORTHO05D004444 5.7e-67 258.1 200 65.5
Thecc.04G179800 Theobroma cacao HOM05D003838 ORTHO05D004444 2.8e-66 255.8 199 62.3
RcHm_v2.0_Chr4g0393311 Rosa chinensis HOM05D003838 ORTHO05D004444 3.7e-66 255.4 199 62.3
FAN17G3077 Fragaria x ananassa HOM05D003838 ORTHO05D004444 2.4e-65 252.7 199 60.8
FvH4_4g03700 Fragaria vesca HOM05D003838 ORTHO05D004444 3.1e-65 252.3 199 59.8
CSS0031035 Camellia sinensis var. sinensis HOM05D003838 ORTHO05D004444 4.1e-65 251.9 194 63.9
MBI16_g18329_MAGBIO Magnolia biondii HOM05D003838 ORTHO05D004444 6.9e-65 251.1 193 63.7
Atru.chr3.1491 Acer truncatum HOM05D003838 ORTHO05D004444 1.2e-64 250.4 189 65.6
GSVIVG01022417001 Vitis vinifera HOM05D003838 ORTHO05D004444 1.2e-64 250.4 193 63.2
Lj9P420T34 Lonicera japonica HOM05D003838 ORTHO05D004444 1.5e-64 250.0 189 65.1
RcHm_v2.0_Chr4g0390961 Rosa chinensis HOM05D003838 ORTHO05D004444 1.5e-64 250.0 194 63.4
Actinidia26441 Actinidia chinensis HOM05D003838 ORTHO05D004444 2.6e-64 249.2 194 62.4
Gorai.011G142700 Gossypium raimondii HOM05D003838 ORTHO05D004444 4.5e-64 248.4 192 63.0
QL03p038958 Quercus lobata HOM05D003838 ORTHO05D004444 5.9e-64 248.1 190 63.7
Sabra17G0019500 Salix brachista HOM05D003838 ORTHO05D004444 7.7e-64 247.7 195 64.1
CSS0022226 Camellia sinensis var. sinensis HOM05D003838 ORTHO05D004444 1.0e-63 247.3 194 62.9
Manes.03G131800 Manihot esculenta HOM05D003838 ORTHO05D004444 1.0e-63 247.3 196 61.2
RcHm_v2.0_Chr4g0390901 Rosa chinensis HOM05D003838 ORTHO05D004444 1.7e-63 246.5 194 62.9
Sed0023259 Sechium edule HOM05D003838 ORTHO05D004444 1.7e-63 246.5 195 62.1
FAN12G0299 Fragaria x ananassa HOM05D000189 ORTHO05D000474 6.5e-63 244.6 188 61.2
Gohir.A10G137200 Gossypium hirsutum HOM05D003838 ORTHO05D004444 6.5e-63 244.6 192 62.0
CSS0030021 Camellia sinensis var. sinensis HOM05D003838 ORTHO05D004444 8.5e-63 244.2 194 61.9
PGR083G1767 Punica granatum HOM05D003838 ORTHO05D004444 1.9e-62 243.0 200 60.0
CsaV3_6G002030 Cucumis sativus L. HOM05D003838 ORTHO05D004444 2.5e-62 242.7 195 61.0
Manes.15G070000 Manihot esculenta HOM05D003838 ORTHO05D004444 3.2e-62 242.3 196 61.7
Nn1g08615 Nelumbo nucifera HOM05D003838 ORTHO05D004444 9.4e-62 240.7 200 59.5
arahy.Tifrunner.gnm1.ann1.0B6HPH Arachis hypogaea HOM05D003838 ORTHO05D004444 1.0e-60 237.3 199 57.8
MSTRG.23130 Avicennia marina HOM05D003838 ORTHO05D004444 1.0e-60 237.3 198 60.6
PSO063G7239 Papaver somniferum HOM05D003838 ORTHO05D004444 1.0e-60 237.3 199 58.8
arahy.Tifrunner.gnm1.ann1.536K79 Arachis hypogaea HOM05D003838 ORTHO05D004444 1.8e-60 236.5 199 57.8
COL.COLO4_07664 Corchorus olitorius HOM05D003838 ORTHO05D004444 1.8e-60 236.5 197 59.9
CSS0020761 Camellia sinensis var. sinensis HOM05D003838 ORTHO05D004444 5.1e-60 235.0 194 59.3
DCAR_006535 Daucus carota HOM05D003838 ORTHO05D004444 5.1e-60 235.0 195 59.5
MBI16_g18328_MAGBIO Magnolia biondii HOM05D003838 ORTHO05D004444 6.7e-60 234.6 193 60.1
QL10p048766 Quercus lobata HOM05D003838 ORTHO05D004444 8.8e-60 234.2 197 59.9
Lalb_Chr10g0091981 Lupinus albus HOM05D003838 ORTHO05D004444 1.5e-59 233.4 199 57.3
SalBow5G3784 Salvia bowleyana HOM05D003838 ORTHO05D004444 1.5e-59 233.4 198 60.1
CANSAT78G1384 Cannabis sativa HOM05D003838 ORTHO05D004444 2.0e-59 233.0 198 57.6
ClCG08G004710 Citrullus lanatus HOM05D003838 ORTHO05D004444 2.0e-59 233.0 197 60.4
Migut.I00010 Erythranthe guttata HOM05D003838 ORTHO05D004444 2.6e-59 232.6 195 57.9
Eucgr.A00080 Eucalyptus grandis HOM05D003838 ORTHO05D004444 2.6e-59 232.6 196 59.2
PSO782G5029 Papaver somniferum HOM05D003838 ORTHO05D004444 3.3e-59 232.3 199 57.8
Aqoxy7G02681 Aquilegia oxysepala HOM05D003838 ORTHO05D004444 9.7e-59 230.7 200 56.5
EL10Ac5g10613 Beta vulgaris HOM05D003838 ORTHO05D004444 1.3e-58 230.3 195 58.5
CDE06G0074 Ceratophyllum demersum HOM05D003838 ORTHO05D004444 2.2e-58 229.6 193 58.5
VMungo1080G0233 Vigna mungo HOM05D003838 ORTHO05D004444 2.8e-58 229.2 199 57.3
Cc07_g02090 Coffea canephora HOM05D003838 ORTHO05D004444 3.7e-58 228.8 197 56.9
PSO210G5426 Papaver somniferum HOM05D003838 ORTHO05D004444 4.8e-58 228.4 199 58.3
TWI38G0658 Tripterygium wilfordii HOM05D003838 ORTHO05D004444 4.8e-58 228.4 193 60.1
Peaxi162Scf00201g00019 Petunia axillaris HOM05D003838 ORTHO05D004444 8.2e-58 227.6 191 57.1
Peaxi162Scf00970g00146 Petunia axillaris HOM05D003838 ORTHO05D004444 8.2e-58 227.6 191 58.1
SalBow7G4199 Salvia bowleyana HOM05D003838 ORTHO05D004444 1.1e-57 227.3 191 59.2
Glyma.11G081600 Glycine max HOM05D003838 ORTHO05D004444 4.1e-57 225.3 198 56.6
Rhsim05G0049100 Rhododendron simsii HOM05D003838 ORTHO05D004444 4.1e-57 225.3 191 56.0
AUR62028681 Chenopodium quinoa HOM05D003838 ORTHO05D004444 5.3e-57 224.9 195 56.4
MELO3C008320.2 Cucumis melo HOM05D003838 ORTHO05D004444 5.3e-57 224.9 242 50.0
AUR62008103 Chenopodium quinoa HOM05D003838 ORTHO05D004444 9.1e-57 224.2 195 56.9
Phvul.005G032200 Phaseolus vulgaris HOM05D003838 ORTHO05D004444 9.1e-57 224.2 199 56.3
Cc06_g03220 Coffea canephora HOM05D003838 ORTHO05D004444 2.0e-56 223.0 197 56.9
Nitab4.5_0000515g0040 Nicotiana tabacum HOM05D003838 ORTHO05D004444 3.4e-56 222.2 197 54.8
Lalb_Chr17g0336351 Lupinus albus HOM05D003838 ORTHO05D004444 5.9e-56 221.5 199 53.3
Aqoxy7G02974 Aquilegia oxysepala HOM05D003838 ORTHO05D004444 7.7e-56 221.1 199 54.3
RcHm_v2.0_Chr4g0390871 Rosa chinensis HOM05D003838 ORTHO05D004444 7.7e-56 221.1 180 61.1
Rhsim09G0030300 Rhododendron simsii HOM05D003838 ORTHO05D004444 1.0e-55 220.7 191 54.5
vmacro23050 Vaccinium macrocarpon HOM05D003838 ORTHO05D004444 1.3e-55 220.3 193 52.8
SGA_v2.0_scaffold90G27933 Striga asiatica HOM05D003838 ORTHO05D004444 1.7e-55 219.9 193 55.4
SGA_v2.0_scaffold25G10841 Striga asiatica HOM05D003838 ORTHO05D004444 2.9e-55 219.2 193 56.0
arahy.Tifrunner.gnm1.ann1.JCJT2N Arachis hypogaea HOM05D000735 ORTHO05D004669 3.8e-55 218.8 194 54.1
Ca_14316_v3 Cicer arietinum L. HOM05D003838 ORTHO05D004444 5.0e-55 218.4 193 56.0
Sopen10g030220 Solanum pennellii HOM05D003838 ORTHO05D004444 5.0e-55 218.4 191 56.0
Solyc10g079580.2 Solanum lycopersicum HOM05D003838 ORTHO05D004444 1.4e-54 216.9 191 55.5
PGSC0003DMG400029841 Solanum tuberosum HOM05D003838 ORTHO05D004444 1.4e-54 216.9 191 55.0
Nn5g28129 Nelumbo nucifera HOM05D003838 ORTHO05D004444 2.5e-54 216.1 194 57.2
vmacro01004 Vaccinium macrocarpon HOM05D003838 ORTHO05D004444 3.2e-54 215.7 187 53.5
Lj3g0022900 Lotus japonicus HOM05D003838 ORTHO05D004444 5.5e-54 214.9 197 54.3
Nitab4.5_0002162g0060 Nicotiana tabacum HOM05D003838 ORTHO05D004444 3.6e-53 212.2 191 54.5
Psat5g216120 Pisum sativum HOM05D003838 ORTHO05D004444 4.7e-53 211.8 199 52.8
FvH4_4g02890 Fragaria vesca HOM05D003838 ORTHO05D004444 6.1e-53 211.5 193 54.9
RhsimUnG0118200 Rhododendron simsii HOM05D003838 ORTHO05D004444 7.9e-53 211.1 191 51.8
ECA246G3227 Erigeron canadensis HOM05D003838 ORTHO05D004444 1.0e-52 210.7 189 55.6
THA.LOC104826203 Tarenaya hassleriana HOM05D003838 ORTHO05D004444 1.0e-52 210.7 199 53.3
CDE02G1933 Ceratophyllum demersum HOM05D003838 ORTHO05D004444 2.3e-52 209.5 192 54.2
HanXRQChr16g0504861 Helianthus annuus HOM05D003838 ORTHO05D004444 2.3e-52 209.5 194 52.1
Nitab4.5_0002208g0080 Nicotiana tabacum HOM05D003838 ORTHO05D004444 2.3e-52 209.5 189 52.9
Ah.11g050950 Amaranthus hybridus HOM05D003838 ORTHO05D004444 3.0e-52 209.1 194 54.1
PGSC0003DMG400002948 Solanum tuberosum HOM05D003838 ORTHO05D004444 3.0e-52 209.1 188 54.8
HanXRQChr14g0439271 Helianthus annuus HOM05D003838 ORTHO05D004444 3.9e-52 208.8 194 52.1
HanXRQChr02g0057691 Helianthus annuus HOM05D003838 ORTHO05D004444 6.7e-52 208.0 194 51.0
Medtr3g021420 Medicago truncatula HOM05D003838 ORTHO05D004444 6.7e-52 208.0 192 53.1
Sc20g0000750 Simmondsia chinensis HOM05D003838 ORTHO05D004444 6.7e-52 208.0 194 53.1
Hund02940 Selenicereus undatus HOM05D003838 ORTHO05D004444 1.1e-51 207.2 199 55.3
FAN12G3313 Fragaria x ananassa HOM05D003838 ORTHO05D004444 2.0e-51 206.5 193 54.4
HanXRQChr16g0516761 Helianthus annuus HOM05D003838 ORTHO05D004444 2.6e-51 206.1 194 51.0
Medtr3g030930 Medicago truncatula HOM05D003838 ORTHO05D004444 2.6e-51 206.1 192 53.1
HanXRQChr01g0021151 Helianthus annuus HOM05D003838 ORTHO05D004444 3.3e-51 205.7 194 51.5
Medtr7g090650 Medicago truncatula HOM05D003838 ORTHO05D004444 3.3e-51 205.7 194 53.6
HanXRQChr10g0305171 Helianthus annuus HOM05D003838 ORTHO05D004444 9.7e-51 204.1 194 51.0
TPR.G3853 Trifolium pratense HOM05D003838 ORTHO05D004444 1.3e-50 203.8 199 51.3
CARHR005500 Cardamine hirsuta HOM05D003838 ORTHO05D004444 6.3e-50 201.4 195 49.7
Sp1g04800 Schrenkiella parvula HOM05D003838 ORTHO05D004444 6.3e-50 201.4 190 48.4
Aqoxy285s002 Aquilegia oxysepala HOM05D003838 ORTHO05D004444 8.2e-50 201.1 179 54.7
AL1G15920 Arabidopsis lyrata HOM05D003838 ORTHO05D004444 1.4e-49 200.3 195 49.7
HanXRQChr02g0057701 Helianthus annuus HOM05D003838 ORTHO05D004444 1.4e-49 200.3 194 51.5
HanXRQChr16g0517051 Helianthus annuus HOM05D003838 ORTHO05D004444 1.4e-49 200.3 197 50.8
HanXRQChr12g0355781 Helianthus annuus HOM05D003838 ORTHO05D004444 2.4e-49 199.5 194 51.0
ATR0665G504 Amborella trichopoda HOM05D003838 ORTHO05D004444 5.3e-49 198.4 197 52.8
Lj5P157T23 Lonicera japonica HOM05D003838 ORTHO05D004444 5.3e-49 198.4 144 64.6
CiPaw.01G100400 Carya illinoinensis HOM05D003838 ORTHO05D004444 9.1e-49 197.6 144 64.6
Thhalv10008811m.g Eutrema salsugineum HOM05D003838 ORTHO05D004444 1.2e-48 197.2 192 47.9
Nitab4.5_0024579g0010 Nicotiana tabacum HOM05D003838 ORTHO05D004444 1.6e-48 196.8 197 50.3
SEGI_03408 Sequoiadendron giganteum HOM05D003838 ORTHO05D004444 2.0e-48 196.4 190 53.2
AT1G05970 Arabidopsis thaliana HOM05D003838 ORTHO05D004444 3.5e-48 195.7 195 47.7
BolC5t29205H Brassica oleracea HOM05D003838 ORTHO05D004444 7.7e-48 194.5 190 46.3
Oeu016385.1 Olea europaea HOM05D003838 ORTHO05D004444 1.0e-47 194.1 174 55.2
C05p04300 Brassica napus HOM05D003838 ORTHO05D004444 1.7e-47 193.4 190 45.8
AUR62024648 Chenopodium quinoa HOM05D004658 ORTHO05D005927 1.7e-47 193.4 195 53.3
A10p04640 Brassica napus HOM05D003838 ORTHO05D004444 2.9e-47 192.6 190 46.8
Lsat_1_v5_gn_2_85780 Lactuca sativa HOM05D003838 ORTHO05D004444 3.8e-47 192.2 172 57.0
Aa31LG1G8370 Aethionema arabicum HOM05D003838 ORTHO05D004444 5.0e-47 191.8 190 48.4
BraA10t42729Z Brassica rapa HOM05D003838 ORTHO05D004444 5.0e-47 191.8 190 46.3
Gohir.D10G129400 Gossypium hirsutum HOM05D003838 ORTHO05D004444 1.9e-46 189.9 142 64.8
ECA238G0498 Erigeron canadensis HOM05D003838 ORTHO05D004444 2.5e-46 189.5 172 55.2
Migut.L01638 Erythranthe guttata HOM05D003838 ORTHO05D004444 4.2e-46 188.7 189 49.2
Carub.0001s0533 Capsella rubella HOM05D003838 ORTHO05D004444 5.5e-46 188.3 195 47.7
AUR62011801 Chenopodium quinoa HOM05D003838 ORTHO05D004444 2.1e-45 186.4 196 52.0
arahy.Tifrunner.gnm1.ann1.IZ4F9K Arachis hypogaea HOM05D003838 ORTHO05D004444 3.6e-45 185.7 199 48.2
Hund09632 Selenicereus undatus HOM05D003838 ORTHO05D004444 6.7e-44 181.4 194 49.0
Sopen04g016270 Solanum pennellii HOM05D003838 ORTHO05D004444 2.0e-43 179.9 165 55.2
unitig_750.g28470 Utricularia gibba HOM05D003838 ORTHO05D004444 7.5e-43 177.9 193 47.2
CARHR038440 Cardamine hirsuta HOM05D003838 ORTHO05D004444 2.8e-42 176.0 171 50.3
Os07g0256200 Oryza sativa ssp. japonica HOM05D003838 ORTHO05D004444 6.3e-42 174.9 188 46.8
Zm00001eb304590 Zea mays HOM05D003838 ORTHO05D004444 6.3e-42 174.9 190 46.3
SEGI_13821 Sequoiadendron giganteum HOM05D003838 ORTHO05D004444 8.2e-42 174.5 190 44.7
vmacro04174 Vaccinium macrocarpon HOM05D003838 ORTHO05D004444 9.1e-41 171.0 164 56.1
BcaC05g24315 Brassica carinata HOM05D003838 ORTHO05D004444 1.6e-40 170.2 190 42.6
Sp1g04950 Schrenkiella parvula HOM05D003838 ORTHO05D004444 1.0e-39 167.5 192 43.8
Ca_25969_v3 Cicer arietinum L. HOM05D003838 ORTHO05D004444 2.5e-38 162.9 165 49.7
Os04g0689700 Oryza sativa ssp. japonica HOM05D003838 ORTHO05D004444 2.5e-38 162.9 192 43.8
PSO832G2359 Papaver somniferum HOM05D003838 ORTHO05D004444 4.2e-38 162.2 199 45.7
Os09g0111800 Oryza sativa ssp. japonica HOM05D003838 ORTHO05D004444 1.6e-37 160.2 192 43.2
FAN22G1473 Fragaria x ananassa HOM05D003838 ORTHO05D004444 8.0e-37 157.9 134 55.2
CDE08G0678 Ceratophyllum demersum HOM05D003838 ORTHO05D004444 2.6e-35 152.9 124 58.9
EL10As5g23534 Beta vulgaris HOM05D003838 ORTHO05D004444 9.8e-35 151.0 185 44.9
ATR0665G008 Amborella trichopoda HOM05D003838 ORTHO05D004444 2.2e-34 149.8 143 51.0
Ca_24199_v3 Cicer arietinum L. HOM05D003838 ORTHO05D004444 3.7e-34 149.1 157 47.1
Cpa.g.sc71.4 Carica papaya HOM05D003838 ORTHO05D004444 6.3e-34 148.3 126 54.8
Zm00001eb076930 Zea mays HOM05D003838 ORTHO05D004444 1.4e-33 147.1 191 39.8
Zm00001eb076310 Zea mays HOM05D003838 ORTHO05D004444 2.4e-33 146.4 191 39.8
Ca_24671_v3 Cicer arietinum L. HOM05D003838 ORTHO05D004444 2.7e-32 142.9 151 46.4
Os02g0669700 Oryza sativa ssp. japonica HOM05D003838 ORTHO05D004444 6.5e-31 138.3 193 40.4
HPP92_001929 Vanilla planifolia HOM05D003838 ORTHO05D004444 1.9e-30 136.7 193 41.5
Rhsim12G0057800 Rhododendron simsii HOM05D003838 ORTHO05D004444 4.7e-29 132.1 155 46.5
RcHm_v2.0_Chr4g0390851 Rosa chinensis HOM05D003838 ORTHO05D004444 4.0e-28 129.0 114 54.4
CDE08G1258 Ceratophyllum demersum HOM05D003838 ORTHO05D004444 4.1e-25 119.0 203 37.4
MD16G1210800 Malus domestica HOM05D003838 ORTHO05D004444 1.5e-22 110.5 112 55.4
Actinidia06873 Actinidia chinensis HOM05D003838 ORTHO05D004444 1.5e-19 100.5 186 38.2
Rhsim12G0009000 Rhododendron simsii HOM05D003838 ORTHO05D004444 3.4e-19 99.4 191 32.5
FAN17G0891 Fragaria x ananassa HOM05D003838 ORTHO05D004444 3.2e-17 92.8 105 46.7
CBR_g15988 Chara braunii HOM05D003838 ORTHO05D004444 1.3e-15 87.4 208 30.3
CBR_g31525 Chara braunii HOM05D003838 ORTHO05D004444 2.3e-15 86.7 200 31.5
Peaxi162Scf01029g00016 Petunia axillaris HOM05D003838 ORTHO05D004444 3.9e-15 85.9 191 30.9
Solyc04g040053.1 Solanum lycopersicum HOM05D003838 ORTHO05D004444 1.1e-14 84.3 165 32.1
Solyc04g040010.3 Solanum lycopersicum HOM05D003838 ORTHO05D004444 7.3e-14 81.6 76 50.0
Mapoly0037s0121 Marchantia polymorpha HOM05D003838 ORTHO05D004444 2.3e-12 76.6 189 31.2
Sopen04g016210 Solanum pennellii HOM05D003838 ORTHO05D004444 3.1e-12 76.3 83 47.0
Pp3c10_5570 Physcomitrium patens HOM05D003838 ORTHO05D004444 9.8e-11 71.2 152 32.9
FAN12G1760 Fragaria x ananassa HOM05D003838 ORTHO05D004444 9.2e-09 64.7 119 36.1
FvH4_4g02900 Fragaria vesca HOM05D003838 ORTHO05D004444 8.6e-07 58.2 87 40.2


User provided reference genes

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