Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.1G032200 Prunus persica HOM05D001788 ORTHO05D018845 2.6e-80 302.0 152 100.0
MD00G1031800 Malus domestica HOM05D020254 ORTHO05D018845 2.0e-16 89.7 142 40.8
THA.LOC104820707 Tarenaya hassleriana HOM05D000203 ORTHO05D000135 1.2e-08 63.9 109 38.5
Thhalv10017825m.g Eutrema salsugineum HOM05D000203 ORTHO05D000135 7.8e-08 61.2 96 39.6
THA.LOC104814692 Tarenaya hassleriana HOM05D000203 ORTHO05D000135 1.7e-07 60.1 81 39.5
ATR0188G020 Amborella trichopoda HOM05D000203 ORTHO05D000135 3.0e-07 59.3 68 45.6
FvH4_3g36320 Fragaria vesca HOM05D000203 ORTHO05D000135 3.9e-07 58.9 98 39.8
FAN21G4030 Fragaria x ananassa HOM05D001788 ORTHO05D003523 3.9e-07 58.9 121 32.2
MBI16_g05030_MAGBIO Magnolia biondii HOM05D000203 ORTHO05D000135 5.0e-07 58.5 74 43.2
TAR636G2055 Trochodendron aralioides HOM05D000203 ORTHO05D000135 5.0e-07 58.5 57 49.1
Sp4g16710 Schrenkiella parvula HOM05D000203 ORTHO05D000135 6.6e-07 58.2 58 51.7
PGSC0003DMG400037384 Solanum tuberosum HOM05D000203 ORTHO05D015565 6.6e-07 58.2 115 33.9
CARHR128530 Cardamine hirsuta HOM05D000203 ORTHO05D000135 8.6e-07 57.8 63 50.8
Duzib160G0196 Durio zibethinus HOM05D000203 ORTHO05D000135 8.6e-07 57.8 100 37.0
Sp6g13190 Schrenkiella parvula HOM05D000203 ORTHO05D000135 8.6e-07 57.8 98 36.7
Ah.13g077210 Amaranthus hybridus HOM05D000203 ORTHO05D000135 1.1e-06 57.4 76 43.4
A04p26360 Brassica napus HOM05D000203 ORTHO05D000135 1.1e-06 57.4 77 46.8
C04p63760 Brassica napus HOM05D000203 ORTHO05D000135 1.1e-06 57.4 77 46.8
BolC4t27843H Brassica oleracea HOM05D000203 ORTHO05D000135 1.1e-06 57.4 77 46.8
BraA04t18140Z Brassica rapa HOM05D000203 ORTHO05D000135 1.1e-06 57.4 77 46.8
CARHR028570 Cardamine hirsuta HOM05D000203 ORTHO05D000135 1.1e-06 57.4 133 33.1
Nn5g30710 Nelumbo nucifera HOM05D000203 ORTHO05D000135 1.1e-06 57.4 64 45.3
QL05p059059 Quercus lobata HOM05D000203 ORTHO05D000135 1.1e-06 57.4 135 31.9
AL4G15890 Arabidopsis lyrata HOM05D000203 ORTHO05D000135 1.5e-06 57.0 124 32.3
AL4G30410 Arabidopsis lyrata HOM05D000203 ORTHO05D000135 1.5e-06 57.0 58 50.0
FvH4_3g05940 Fragaria vesca HOM05D000203 ORTHO05D000135 1.5e-06 57.0 98 38.8
FAN11G3627 Fragaria x ananassa HOM05D000203 ORTHO05D000135 1.5e-06 57.0 98 38.8
MD10G1112300 Malus domestica HOM05D000203 ORTHO05D000135 1.5e-06 57.0 107 36.4
TAR365G0383 Trochodendron aralioides HOM05D000203 ORTHO05D000135 1.5e-06 57.0 57 47.4
TAR365G0895 Trochodendron aralioides HOM05D000203 ORTHO05D000135 1.5e-06 57.0 57 47.4
TAR365G1078 Trochodendron aralioides HOM05D000203 ORTHO05D000135 1.5e-06 57.0 57 47.4
ClCG02G012490 Citrullus lanatus HOM05D000203 ORTHO05D000135 1.9e-06 56.6 151 29.1
FAN21G2663 Fragaria x ananassa HOM05D000203 ORTHO05D000135 1.9e-06 56.6 98 38.8
FAN25G0620 Fragaria x ananassa HOM05D001788 ORTHO05D045463 1.9e-06 56.6 121 31.4
Nn5g30711 Nelumbo nucifera HOM05D000203 ORTHO05D000135 1.9e-06 56.6 67 43.3
QL11p028631 Quercus lobata HOM05D000203 ORTHO05D000135 1.9e-06 56.6 58 50.0
QL11p028754 Quercus lobata HOM05D000203 ORTHO05D000135 1.9e-06 56.6 58 50.0
Thecc.06G153500 Theobroma cacao HOM05D000203 ORTHO05D000135 1.9e-06 56.6 110 33.6
Carub.0004s1611 Capsella rubella HOM05D000203 ORTHO05D000135 2.5e-06 56.2 132 34.1
CARHR116820 Cardamine hirsuta HOM05D000203 ORTHO05D000135 2.5e-06 56.2 58 48.3
Cfa020086 Carpinus fangiana HOM05D000203 ORTHO05D000135 2.5e-06 56.2 62 46.8
Aa31LG10G7770 Aethionema arabicum HOM05D000203 ORTHO05D000135 3.3e-06 55.8 65 44.6
CAN.G377.22 Capsicum annuum HOM05D000203 ORTHO05D000135 3.3e-06 55.8 57 42.1
CsaV3_2G016620 Cucumis sativus L. HOM05D000203 ORTHO05D000135 3.3e-06 55.8 147 28.6
MBI16_g34662_MAGBIO Magnolia biondii HOM05D000203 ORTHO05D000135 3.3e-06 55.8 84 44.0
MD05G1107900 Malus domestica HOM05D000203 ORTHO05D000135 3.3e-06 55.8 53 52.8
Solyc10g050900.1 Solanum lycopersicum HOM05D000203 ORTHO05D000135 3.3e-06 55.8 55 49.1
Atru.chr10.1015 Acer truncatum HOM05D000203 ORTHO05D010688 4.3e-06 55.5 136 30.1
Atru.chr10.1024 Acer truncatum HOM05D000203 ORTHO05D010688 4.3e-06 55.5 136 30.1
BcaC07g40902 Brassica carinata HOM05D000203 ORTHO05D000135 4.3e-06 55.5 58 48.3
CSS0021382 Camellia sinensis var. sinensis HOM05D000203 ORTHO05D000135 4.3e-06 55.5 83 41.0
CSS0029942 Camellia sinensis var. sinensis HOM05D000203 ORTHO05D000135 4.3e-06 55.5 83 41.0
CAN.G4508.1 Capsicum annuum HOM05D000203 ORTHO05D000135 4.3e-06 55.5 62 46.8
MELO3C020869.2 Cucumis melo HOM05D000261 ORTHO05D002902 4.3e-06 55.5 148 29.1
MBI08_g14958_MAGBIO Magnolia biondii HOM05D000203 ORTHO05D000135 4.3e-06 55.5 63 46.0
Peaxi162Scf00274g00002 Petunia axillaris HOM05D000203 ORTHO05D000135 4.3e-06 55.5 104 31.7
Actinidia02447 Actinidia chinensis HOM05D000203 ORTHO05D000135 5.6e-06 55.1 71 43.7
BcaB06g28019 Brassica carinata HOM05D000203 ORTHO05D000135 5.6e-06 55.1 58 46.6
BcaC02g08396 Brassica carinata HOM05D000203 ORTHO05D000135 5.6e-06 55.1 58 46.6
C04p54730 Brassica napus HOM05D000203 ORTHO05D000135 5.6e-06 55.1 58 46.6
BolC4t27018H Brassica oleracea HOM05D000203 ORTHO05D000135 5.6e-06 55.1 58 46.6
CAN.G2092.1 Capsicum annuum HOM05D000203 ORTHO05D000135 5.6e-06 55.1 61 41.0
CARHR176040 Cardamine hirsuta HOM05D000203 ORTHO05D000135 5.6e-06 55.1 136 30.1
Ciclev10007104m.g Citrus clementina HOM05D000203 ORTHO05D000135 5.6e-06 55.1 92 38.0
FvH4_3g33170 Fragaria vesca HOM05D001788 ORTHO05D045463 5.6e-06 55.1 121 30.6
PSO302G0246 Papaver somniferum HOM05D000203 ORTHO05D000135 5.6e-06 55.1 60 45.0
AT2G34440 Arabidopsis thaliana HOM05D000203 ORTHO05D000135 7.3e-06 54.7 129 34.1
CANSAT54G2621 Cannabis sativa HOM05D000203 ORTHO05D010688 7.3e-06 54.7 147 30.6
CARHR176030 Cardamine hirsuta HOM05D000203 ORTHO05D000135 7.3e-06 54.7 146 31.5
Ciclev10006708m.g Citrus clementina HOM05D000203 ORTHO05D000135 7.3e-06 54.7 98 38.8
Dinv14980 Davidia involucrata HOM05D000203 ORTHO05D010688 7.3e-06 54.7 79 40.5
Dinv14984 Davidia involucrata HOM05D000203 ORTHO05D000135 7.3e-06 54.7 79 40.5
Thhalv10000479m.g Eutrema salsugineum HOM05D000203 ORTHO05D000135 7.3e-06 54.7 103 35.0
FAN11G1933 Fragaria x ananassa HOM05D001788 ORTHO05D207822 7.3e-06 54.7 121 30.6
Hma1.2p1_1051F.1_g252260 Hydrangea macrophylla HOM05D000203 ORTHO05D000135 7.3e-06 54.7 109 33.9
Nn4g25572 Nelumbo nucifera HOM05D000203 ORTHO05D000135 7.3e-06 54.7 122 31.1
Oeu016647.1 Olea europaea HOM05D000203 ORTHO05D000135 7.3e-06 54.7 63 39.7
Oeu025302.1 Olea europaea HOM05D000203 ORTHO05D000135 7.3e-06 54.7 62 40.3
PSO170G0964 Papaver somniferum HOM05D000203 ORTHO05D000135 7.3e-06 54.7 66 40.9
TAR285G0001 Trochodendron aralioides HOM05D000203 ORTHO05D000135 7.3e-06 54.7 107 35.5
TAR362G0747 Trochodendron aralioides HOM05D000203 ORTHO05D000135 7.3e-06 54.7 70 42.9
TAR362G0982 Trochodendron aralioides HOM05D000203 ORTHO05D000135 7.3e-06 54.7 64 42.2
Actinidia00347 Actinidia chinensis HOM05D000203 ORTHO05D000135 9.5e-06 54.3 129 34.1
CSS0040451 Camellia sinensis var. sinensis HOM05D000203 ORTHO05D000135 9.5e-06 54.3 114 26.3
CAN.G6731.1 Capsicum annuum HOM05D000203 ORTHO05D000135 9.5e-06 54.3 86 39.5
CARHR213100 Cardamine hirsuta HOM05D000203 ORTHO05D000135 9.5e-06 54.3 133 31.6
Cpa.g.sc20.86 Carica papaya HOM05D000203 ORTHO05D000135 9.5e-06 54.3 105 37.1
Cc09_g04710 Coffea canephora HOM05D000203 ORTHO05D000135 9.5e-06 54.3 111 30.6
Nitab4.5_0003563g0030 Nicotiana tabacum HOM05D000203 ORTHO05D000135 9.5e-06 54.3 64 42.2
Nitab4.5_0010657g0030 Nicotiana tabacum HOM05D000203 ORTHO05D000135 9.5e-06 54.3 61 44.3
PGR004G1509 Punica granatum HOM05D000203 ORTHO05D000135 9.5e-06 54.3 81 37.0
PGR042G2396 Punica granatum HOM05D000203 ORTHO05D000135 9.5e-06 54.3 61 37.7
Rhsim11G0028800 Rhododendron simsii HOM05D000203 ORTHO05D000135 9.5e-06 54.3 112 32.1
RcHm_v2.0_Chr3g0477441 Rosa chinensis HOM05D000203 ORTHO05D000135 9.5e-06 54.3 66 40.9
Sp4g03860 Schrenkiella parvula HOM05D000203 ORTHO05D000135 9.5e-06 54.3 77 42.9


User provided reference genes

Program Settings