Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.1G030500 Prunus persica HOM05D007216 ORTHO05D009261 3.1e-128 461.8 236 100.0
MD16G1208400 Malus domestica HOM05D007216 ORTHO05D009261 6.0e-92 341.3 236 75.4
MD13G1206900 Malus domestica HOM05D007216 ORTHO05D009261 3.3e-90 335.5 233 73.0
RcHm_v2.0_Chr4g0390311 Rosa chinensis HOM05D007216 ORTHO05D009261 2.0e-79 299.7 236 67.8
FvH4_4g02610 Fragaria vesca HOM05D007216 ORTHO05D009261 9.1e-72 274.2 238 63.0
QL06p015626 Quercus lobata HOM05D007216 ORTHO05D009261 1.1e-61 240.7 214 61.2
FAN12G1817 Fragaria x ananassa HOM05D007216 ORTHO05D009261 1.5e-61 240.4 215 61.4
Cfa008380 Carpinus fangiana HOM05D007216 ORTHO05D009261 3.1e-56 222.6 225 55.1
CiPaw.02G116600 Carya illinoinensis HOM05D007216 ORTHO05D009261 5.0e-54 215.3 236 55.1
Haze_11299 Corylus avellana HOM05D007216 ORTHO05D009261 6.5e-54 214.9 229 53.3
QL06p015621 Quercus lobata HOM05D007216 ORTHO05D009261 1.9e-53 213.4 190 61.1
Haze_11297 Corylus avellana HOM05D007216 ORTHO05D009261 2.5e-53 213.0 229 52.4
CiPaw.01G190600 Carya illinoinensis HOM05D007216 ORTHO05D009261 1.6e-52 210.3 232 51.7
Duzib052G0756 Durio zibethinus HOM05D007216 ORTHO05D009261 1.4e-51 207.2 237 49.4
Thecc.04G245800 Theobroma cacao HOM05D007216 ORTHO05D009261 1.5e-50 203.8 235 51.1
TAR365G0907 Trochodendron aralioides HOM05D007216 ORTHO05D009261 2.6e-50 203.0 235 49.8
Actinidia08446 Actinidia chinensis HOM05D007216 ORTHO05D009261 3.1e-48 196.1 217 51.2
Duzib151G0820 Durio zibethinus HOM05D007216 ORTHO05D009261 1.2e-47 194.1 236 49.2
Duzib151G0028 Durio zibethinus HOM05D007216 ORTHO05D009261 5.9e-47 191.8 236 48.7
Actinidia05467 Actinidia chinensis HOM05D007216 ORTHO05D009261 1.7e-46 190.3 216 49.1
Solyc09g083360.3 Solanum lycopersicum HOM05D007216 ORTHO05D009261 2.2e-46 189.9 213 49.3
Sopen09g032280 Solanum pennellii HOM05D007216 ORTHO05D009261 3.8e-46 189.1 213 48.8
Cpa.g.sc58.45 Carica papaya HOM05D007216 ORTHO05D009261 6.5e-46 188.3 224 45.1
CSS0019068 Camellia sinensis var. sinensis HOM05D007216 ORTHO05D009261 1.1e-45 187.6 203 49.3
Cc03_g04820 Coffea canephora HOM05D007216 ORTHO05D009261 1.5e-45 187.2 207 49.8
Eucgr.H00196 Eucalyptus grandis HOM05D007216 ORTHO05D009261 1.5e-45 187.2 212 51.4
COL.COLO4_15786 Corchorus olitorius HOM05D007216 ORTHO05D009261 2.5e-45 186.4 245 43.7
Rhsim02G0032900 Rhododendron simsii HOM05D007216 ORTHO05D009261 3.2e-45 186.0 196 53.1
PGR031G3332 Punica granatum HOM05D007216 ORTHO05D009261 2.1e-44 183.3 190 53.2
Duzib212G0514 Durio zibethinus HOM05D007216 ORTHO05D009261 2.7e-44 183.0 215 48.4
Potri.008G161800 Populus trichocarpa HOM05D007216 ORTHO05D009261 8.0e-44 181.4 225 46.2
Gorai.006G246400 Gossypium raimondii HOM05D007216 ORTHO05D009261 2.3e-43 179.9 228 48.7
Ciclev10005777m.g Citrus clementina HOM05D007216 ORTHO05D009261 6.8e-43 178.3 236 45.8
Gohir.A09G222900 Gossypium hirsutum HOM05D007216 ORTHO05D009261 8.8e-43 177.9 228 47.8
TWI73G0753 Tripterygium wilfordii HOM05D007216 ORTHO05D009261 1.3e-41 174.1 225 46.7
Potri.010G077000 Populus trichocarpa HOM05D007216 ORTHO05D009261 4.9e-41 172.2 224 46.0
Dinv29914 Davidia involucrata HOM05D007216 ORTHO05D009261 1.1e-40 171.0 151 58.3
TWI09G1088 Tripterygium wilfordii HOM05D007216 ORTHO05D009261 1.8e-40 170.2 221 47.5
CANSAT78G2280 Cannabis sativa HOM05D007216 ORTHO05D009261 2.4e-40 169.9 194 50.0
Sabra10G0031800 Salix brachista HOM05D007216 ORTHO05D009261 2.4e-40 169.9 224 42.9
Manes.03G169100 Manihot esculenta HOM05D007216 ORTHO05D009261 9.1e-40 167.9 228 45.2
Atru.chr4.2233 Acer truncatum HOM05D007216 ORTHO05D009261 1.6e-39 167.2 226 43.4
Eucgr.J01563 Eucalyptus grandis HOM05D007216 ORTHO05D009261 2.7e-39 166.4 187 51.3
TAR636G2640 Trochodendron aralioides HOM05D007216 ORTHO05D009261 1.0e-38 164.5 209 45.9
Peaxi162Scf00813g00118 Petunia axillaris HOM05D007216 ORTHO05D009261 2.3e-38 163.3 190 45.3
Sabra08G0123600 Salix brachista HOM05D007216 ORTHO05D009261 2.3e-38 163.3 205 45.4
MSTRG.4097 Avicennia marina HOM05D007216 ORTHO05D009261 3.8e-38 162.5 210 49.0
Migut.G00433 Erythranthe guttata HOM05D007216 ORTHO05D009261 1.5e-37 160.6 206 46.6
DCAR_027275 Daucus carota HOM05D007216 ORTHO05D009261 2.5e-37 159.8 207 43.5
Nn1g02593 Nelumbo nucifera HOM05D007216 ORTHO05D009261 3.3e-37 159.5 233 44.2
Nn3g19525 Nelumbo nucifera HOM05D007216 ORTHO05D009261 3.3e-37 159.5 219 44.7
Medtr1g040435 Medicago truncatula HOM05D007216 ORTHO05D009261 9.5e-37 157.9 235 40.4
Oeu008788.2 Olea europaea HOM05D007216 ORTHO05D009261 2.1e-36 156.8 186 46.8
Gohir.D02G042400 Gossypium hirsutum HOM05D007216 ORTHO05D009261 2.8e-36 156.4 236 43.2
ClCG06G006720 Citrullus lanatus HOM05D007216 ORTHO05D009261 3.6e-36 156.0 220 43.2
Gohir.D09G224900 Gossypium hirsutum HOM05D007216 ORTHO05D009261 4.7e-36 155.6 179 52.0
Glyma.02G000800 Glycine max HOM05D007216 ORTHO05D009261 6.1e-36 155.2 211 43.6
Gorai.005G046700 Gossypium raimondii HOM05D007216 ORTHO05D009261 1.4e-35 154.1 236 42.4
Sed0021571 Sechium edule HOM05D007216 ORTHO05D009261 2.3e-35 153.3 214 42.1
BraA09t37658Z Brassica rapa HOM05D007216 ORTHO05D009261 3.0e-35 152.9 209 42.6
AL390U10010 Arabidopsis lyrata HOM05D007216 ORTHO05D009261 4.0e-35 152.5 215 44.2
BcaC04g21907 Brassica carinata HOM05D007216 ORTHO05D009261 6.8e-35 151.8 209 42.6
MELO3C026778.2 Cucumis melo HOM05D007216 ORTHO05D009261 4.4e-34 149.1 223 41.7
Sed0000846 Sechium edule HOM05D007216 ORTHO05D009261 7.5e-34 148.3 204 42.2
GSVIVG01018111001 Vitis vinifera HOM05D007216 ORTHO05D009261 7.5e-34 148.3 177 47.5
CsaV3_2G013060 Cucumis sativus L. HOM05D007216 ORTHO05D009261 9.8e-34 147.9 185 45.4
Nitab4.5_0004798g0070 Nicotiana tabacum HOM05D007216 ORTHO05D009261 9.8e-34 147.9 222 41.4
THA.LOC104827376 Tarenaya hassleriana HOM05D007216 ORTHO05D009261 9.8e-34 147.9 210 42.9
CARHR006300 Cardamine hirsuta HOM05D007216 ORTHO05D009261 1.3e-33 147.5 227 40.5
BcaC06g31685 Brassica carinata HOM05D007216 ORTHO05D009261 2.9e-33 146.4 213 40.4
A09p20520 Brassica napus HOM05D007216 ORTHO05D009261 4.9e-33 145.6 216 40.7
Aa31LG5G3580 Aethionema arabicum HOM05D007216 ORTHO05D009261 1.4e-32 144.1 207 39.6
Gohir.A02G035500 Gossypium hirsutum HOM05D007216 ORTHO05D009261 1.8e-32 143.7 237 40.1
ATR0665G548 Amborella trichopoda HOM05D007216 ORTHO05D009261 2.4e-32 143.3 205 41.0
Thhalv10003353m.g Eutrema salsugineum HOM05D007216 ORTHO05D009261 2.4e-32 143.3 207 41.1
Lalb_Chr03g0037861 Lupinus albus HOM05D007216 ORTHO05D009261 3.2e-32 142.9 205 42.4
Psat6g102240 Pisum sativum HOM05D007216 ORTHO05D009261 3.2e-32 142.9 219 42.0
BcaC06g34638 Brassica carinata HOM05D007216 ORTHO05D009261 5.4e-32 142.1 212 42.5
C07p26230 Brassica napus HOM05D007216 ORTHO05D009261 5.4e-32 142.1 212 42.5
BolC7t43151H Brassica oleracea HOM05D007216 ORTHO05D009261 5.4e-32 142.1 212 42.5
Sed0019243 Sechium edule HOM05D007216 ORTHO05D009261 5.4e-32 142.1 180 42.8
A06p47770 Brassica napus HOM05D007216 ORTHO05D009261 1.6e-31 140.6 182 45.6
BcaB07g31004 Brassica carinata HOM05D007216 ORTHO05D009261 2.0e-31 140.2 208 41.8
BolC9t55498H Brassica oleracea HOM05D007216 ORTHO05D009261 2.0e-31 140.2 206 41.3
Carub.0008s0499 Capsella rubella HOM05D007216 ORTHO05D009261 2.7e-31 139.8 229 41.0
C09p25930 Brassica napus HOM05D007216 ORTHO05D009261 4.6e-31 139.0 189 42.3
THA.LOC104801097 Tarenaya hassleriana HOM05D007216 ORTHO05D009261 5.9e-31 138.7 245 39.6
DCAR_027276 Daucus carota HOM05D007216 ORTHO05D009261 1.7e-30 137.1 214 41.1
SpUn0744_0010 Schrenkiella parvula HOM05D007216 ORTHO05D009261 6.6e-30 135.2 191 40.8
AT5G43650 Arabidopsis thaliana HOM05D007216 ORTHO05D009261 3.3e-29 132.9 162 45.7
Nitab4.5_0000525g0160 Nicotiana tabacum HOM05D007216 ORTHO05D009261 1.2e-28 131.0 226 38.9
BraA06t27645Z Brassica rapa HOM05D007216 ORTHO05D009261 1.6e-28 130.6 167 45.5
TPR.G22479 Trifolium pratense HOM05D007216 ORTHO05D009261 3.6e-28 129.4 244 36.1
Dinv44631 Davidia involucrata HOM05D007216 ORTHO05D009261 6.8e-27 125.2 115 54.8
Sc13g0004990 Simmondsia chinensis HOM05D007216 ORTHO05D009261 8.9e-27 124.8 236 38.6
Hma1.2p1_0893F.1_g233480 Hydrangea macrophylla HOM05D007216 ORTHO05D009261 5.4e-24 115.5 107 55.1
Os03g0741100 Oryza sativa ssp. japonica HOM05D007216 ORTHO05D009261 2.7e-23 113.2 159 40.9
Phvul.007G280700 Phaseolus vulgaris HOM05D007216 ORTHO05D009261 1.0e-22 111.3 154 43.5
Lj6C656T7 Lonicera japonica HOM05D007216 ORTHO05D009261 1.1e-21 107.8 194 38.7
CAN.G1007.15 Capsicum annuum HOM05D007216 ORTHO05D009261 1.9e-21 107.1 127 45.7
Zm00001eb056760 Zea mays HOM05D007216 ORTHO05D009261 1.2e-20 104.4 150 38.7
SpUn0429_0010 Schrenkiella parvula HOM05D007216 ORTHO05D009261 8.1e-20 101.7 190 33.2
HPP92_023468 Vanilla planifolia HOM05D007216 ORTHO05D009261 3.7e-17 92.8 231 33.3
Aqoxy5G00327 Aquilegia oxysepala HOM05D007216 ORTHO05D009261 1.1e-16 91.3 122 43.4
HPP92_027840 Vanilla planifolia HOM05D007216 ORTHO05D009261 2.4e-16 90.1 209 31.1
HPP92_023463 Vanilla planifolia HOM05D007216 ORTHO05D009261 7.1e-16 88.6 220 34.1
Zm00001eb370010 Zea mays HOM05D007216 ORTHO05D049898 1.6e-07 60.8 208 26.0
CANSAT56G2242 Cannabis sativa HOM05D004059 ORTHO05D004591 6.0e-07 58.9 109 37.6
DCAR_011967 Daucus carota HOM05D004059 ORTHO05D004591 7.8e-07 58.5 126 32.5
Os01g0773800 Oryza sativa ssp. japonica HOM05D007216 ORTHO05D049898 7.8e-07 58.5 197 29.4
Rhsim05G0018600 Rhododendron simsii HOM05D004059 ORTHO05D004591 7.8e-07 58.5 114 36.8
MBI01_g09949_MAGBIO Magnolia biondii HOM05D004059 ORTHO05D004591 1.3e-06 57.8 158 29.7
SGA_v2.0_scaffold23G10028 Striga asiatica HOM05D004059 ORTHO05D004591 3.9e-06 56.2 145 33.8
Haze_25925 Corylus avellana HOM05D004059 ORTHO05D004591 8.6e-06 55.1 133 32.3
Nn8g38830 Nelumbo nucifera HOM05D004059 ORTHO05D004591 8.6e-06 55.1 186 29.6
PGR102G2684 Punica granatum HOM05D004059 ORTHO05D004591 8.6e-06 55.1 140 32.9


User provided reference genes

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