Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.1G010000 Prunus persica HOM05D003776 ORTHO05D004459 4.6e-80 301.2 156 100.0
Prupe.7G242500 Prunus persica HOM05D003776 ORTHO05D004459 1.4e-20 103.6 61 90.2
MD02G1032900 Malus domestica HOM05D003776 ORTHO05D004459 3.8e-18 95.5 61 85.2
FvH4_1g03320 Fragaria vesca HOM05D003776 ORTHO05D004459 6.5e-18 94.7 61 83.6
FAN26G1438 Fragaria x ananassa HOM05D003776 ORTHO05D004459 6.5e-18 94.7 61 83.6
FAN28G2120 Fragaria x ananassa HOM05D003776 ORTHO05D004459 8.5e-18 94.4 61 82.0
FAN23G1640 Fragaria x ananassa HOM05D003776 ORTHO05D004459 1.1e-17 94.0 61 82.0
RcHm_v2.0_Chr2g0088511 Rosa chinensis HOM05D003776 ORTHO05D004459 1.1e-17 94.0 61 82.0
FAN19G1245 Fragaria x ananassa HOM05D003776 ORTHO05D004459 1.9e-17 93.2 61 82.0
Cc06_g08530 Coffea canephora HOM05D003776 ORTHO05D004459 3.9e-15 85.5 120 44.2
CANSAT11G0130 Cannabis sativa HOM05D003776 ORTHO05D004459 5.2e-15 85.1 60 76.7
Cpa.g.sc75.30 Carica papaya HOM05D003776 ORTHO05D004459 6.7e-15 84.7 106 54.7
VMungo1309G0107 Vigna mungo HOM05D003776 ORTHO05D004459 6.7e-15 84.7 61 77.0
Atru.chr7.1164 Acer truncatum HOM05D003776 ORTHO05D004459 2.0e-14 83.2 61 73.8
Cfa003371 Carpinus fangiana HOM05D003776 ORTHO05D004459 2.0e-14 83.2 61 73.8
Haze_25580 Corylus avellana HOM05D003776 ORTHO05D004459 2.0e-14 83.2 61 73.8
Nn8g39448 Nelumbo nucifera HOM05D003776 ORTHO05D004459 2.0e-14 83.2 61 73.8
Phvul.009G198200 Phaseolus vulgaris HOM05D003776 ORTHO05D004459 2.0e-14 83.2 61 75.4
TPR.G21471 Trifolium pratense HOM05D003776 ORTHO05D004459 3.3e-14 82.4 61 75.4
Dinv36529 Davidia involucrata HOM05D003776 ORTHO05D004459 4.4e-14 82.0 87 57.5
Lj3g0001115 Lotus japonicus HOM05D003776 ORTHO05D004459 5.7e-14 81.6 106 54.7
GSVIVG01015528001 Vitis vinifera HOM05D003776 ORTHO05D004459 5.7e-14 81.6 61 73.8
Glyma.06G222100 Glycine max HOM05D003776 ORTHO05D004459 7.4e-14 81.3 61 75.4
Manes.05G119700 Manihot esculenta HOM05D003776 ORTHO05D004459 7.4e-14 81.3 60 66.7
Lalb_Chr08g0234811 Lupinus albus HOM05D003776 ORTHO05D004459 1.3e-13 80.5 61 73.8
Lalb_Chr11g0072121 Lupinus albus HOM05D003776 ORTHO05D004459 1.3e-13 80.5 106 52.8
QL02p088328 Quercus lobata HOM05D003776 ORTHO05D004459 1.7e-13 80.1 61 68.9
Medtr7g099880 Medicago truncatula HOM05D003776 ORTHO05D004459 2.2e-13 79.7 63 69.8
Rhsim03G0247900 Rhododendron simsii HOM05D003776 ORTHO05D004459 2.2e-13 79.7 61 68.9
Sabra06G0094200 Salix brachista HOM05D003776 ORTHO05D004459 2.2e-13 79.7 60 73.3
Psat1g024680 Pisum sativum HOM05D003776 ORTHO05D004459 3.7e-13 79.0 61 70.5
vmacro06129 Vaccinium macrocarpon HOM05D003776 ORTHO05D004459 3.7e-13 79.0 61 68.9
CiPaw.03G244000 Carya illinoinensis HOM05D003776 ORTHO05D004459 4.8e-13 78.6 61 67.2
Ciclev10007244m.g Citrus clementina HOM05D003776 ORTHO05D004459 4.8e-13 78.6 59 72.9
Duzib168G2222 Durio zibethinus HOM05D003776 ORTHO05D004459 8.2e-13 77.8 61 70.5
Lsat_1_v5_gn_5_96021 Lactuca sativa HOM05D003776 ORTHO05D004459 1.1e-12 77.4 61 70.5
Solyc12g006480.2 Solanum lycopersicum HOM05D003776 ORTHO05D004459 1.4e-12 77.0 61 67.2
Sopen12g002420 Solanum pennellii HOM05D003776 ORTHO05D004459 1.4e-12 77.0 61 67.2
Ca_14403_v3 Cicer arietinum L. HOM05D003776 ORTHO05D004459 1.8e-12 76.6 106 51.9
Ca_29538_v3 Cicer arietinum L. HOM05D003776 ORTHO05D004459 1.8e-12 76.6 106 51.9
CDE02G1576 Ceratophyllum demersum HOM05D003776 ORTHO05D004459 2.4e-12 76.3 62 67.7
PSO170G4267 Papaver somniferum HOM05D003776 ORTHO05D004459 2.4e-12 76.3 61 68.9
PSO455G0084 Papaver somniferum HOM05D003776 ORTHO05D004459 2.4e-12 76.3 61 68.9
CAN.G816.2 Capsicum annuum HOM05D003776 ORTHO05D004459 3.1e-12 75.9 61 67.2
Nitab4.5_0002658g0150 Nicotiana tabacum HOM05D003776 ORTHO05D004459 3.1e-12 75.9 61 65.6
PGR102G3028 Punica granatum HOM05D003776 ORTHO05D004459 3.1e-12 75.9 91 51.6
Aqoxy3G01756 Aquilegia oxysepala HOM05D003776 ORTHO05D004459 4.1e-12 75.5 59 69.5
Thecc.09G126200 Theobroma cacao HOM05D003776 ORTHO05D004459 4.1e-12 75.5 61 67.2
Hma1.2p1_2368F.1_g320720 Hydrangea macrophylla HOM05D003776 ORTHO05D004459 7.0e-12 74.7 61 68.9
Potri.006G119600 Populus trichocarpa HOM05D003776 ORTHO05D004459 7.0e-12 74.7 77 58.4
TAR625G0211 Trochodendron aralioides HOM05D003776 ORTHO05D004459 7.0e-12 74.7 55 74.5
Gohir.A07G035800 Gossypium hirsutum HOM05D003776 ORTHO05D004459 9.1e-12 74.3 61 68.9
arahy.Tifrunner.gnm1.ann1.6DBV70 Arachis hypogaea HOM05D003776 ORTHO05D004459 1.6e-11 73.6 70 62.9
DCAR_017818 Daucus carota HOM05D003776 ORTHO05D004459 1.6e-11 73.6 72 59.7
ECA234G1804 Erigeron canadensis HOM05D003776 ORTHO05D004459 1.6e-11 73.6 61 68.9
THA.LOC104808989 Tarenaya hassleriana HOM05D003776 ORTHO05D004459 1.6e-11 73.6 60 66.7
Nitab4.5_0008846g0010 Nicotiana tabacum HOM05D003776 ORTHO05D004459 2.0e-11 73.2 61 65.6
Aqoxy7G02178 Aquilegia oxysepala HOM05D003776 ORTHO05D004459 2.6e-11 72.8 105 51.4
Gohir.D07G039800 Gossypium hirsutum HOM05D003776 ORTHO05D004459 2.6e-11 72.8 61 67.2
Hund09133 Selenicereus undatus HOM05D003776 ORTHO05D004459 2.6e-11 72.8 76 53.9
HanXRQChr10g0315491 Helianthus annuus HOM05D003776 ORTHO05D004459 3.5e-11 72.4 61 67.2
TWI34G1787 Tripterygium wilfordii HOM05D003776 ORTHO05D004459 7.7e-11 71.2 59 69.5
AUR62013362 Chenopodium quinoa HOM05D003776 ORTHO05D004459 1.0e-10 70.9 61 62.3
Gorai.001G042000 Gossypium raimondii HOM05D003776 ORTHO05D004459 1.0e-10 70.9 106 50.0
Oeu055886.1 Olea europaea HOM05D003776 ORTHO05D004459 1.0e-10 70.9 59 64.4
AUR62011127 Chenopodium quinoa HOM05D003776 ORTHO05D004459 1.3e-10 70.5 61 62.3
Peaxi162Scf01211g00016 Petunia axillaris HOM05D003776 ORTHO05D004459 1.3e-10 70.5 61 62.3
Actinidia07427 Actinidia chinensis HOM05D003776 ORTHO05D004459 1.7e-10 70.1 63 61.9
Eucgr.C04218 Eucalyptus grandis HOM05D003776 ORTHO05D004459 2.9e-10 69.3 73 57.5
MSTRG.19598 Avicennia marina HOM05D003776 ORTHO05D004459 5.0e-10 68.6 61 62.3
Sc08g0006640 Simmondsia chinensis HOM05D003776 ORTHO05D004459 5.0e-10 68.6 123 38.2
Sed0006794 Sechium edule HOM05D003776 ORTHO05D004459 1.1e-09 67.4 63 61.9
EL10Ac8g18652 Beta vulgaris HOM05D003776 ORTHO05D004459 1.9e-09 66.6 91 46.2
Migut.J01158 Erythranthe guttata HOM05D003776 ORTHO05D004459 1.9e-09 66.6 91 49.5
CARHR118630 Cardamine hirsuta HOM05D003776 ORTHO05D004459 4.2e-09 65.5 60 61.7
CsaV3_2G002830 Cucumis sativus L. HOM05D003776 ORTHO05D004459 4.2e-09 65.5 63 58.7
Os02g0202250 Oryza sativa ssp. japonica HOM05D003776 ORTHO05D004459 7.2e-09 64.7 60 50.0
Carub.0008s1091 Capsella rubella HOM05D003776 ORTHO05D004459 9.4e-09 64.3 64 56.2
Sp4g09050 Schrenkiella parvula HOM05D003776 ORTHO05D004459 9.4e-09 64.3 72 55.6
Ah.09g226220 Amaranthus hybridus HOM05D003776 ORTHO05D004459 1.2e-08 63.9 91 45.1
A07p17720 Brassica napus HOM05D003776 ORTHO05D004459 1.6e-08 63.5 72 55.6
MELO3C004510.2 Cucumis melo HOM05D003776 ORTHO05D004459 1.6e-08 63.5 63 57.1
AT5G51200 Arabidopsis thaliana HOM05D003776 ORTHO05D004459 2.7e-08 62.8 60 58.3
BraA07t29494Z Brassica rapa HOM05D003776 ORTHO05D004459 2.7e-08 62.8 60 60.0
Thhalv10002339m.g Eutrema salsugineum HOM05D003776 ORTHO05D004459 2.7e-08 62.8 84 47.6
ATR0322G028 Amborella trichopoda HOM05D003776 ORTHO05D004459 4.7e-08 62.0 82 45.1
AL8G25470 Arabidopsis lyrata HOM05D003776 ORTHO05D004459 4.7e-08 62.0 60 58.3
ClCG11G003010 Citrullus lanatus HOM05D003776 ORTHO05D004459 4.7e-08 62.0 62 56.5
C07p25670 Brassica napus HOM05D003776 ORTHO05D004459 6.1e-08 61.6 60 58.3
BolC7t43085H Brassica oleracea HOM05D003776 ORTHO05D004459 6.1e-08 61.6 60 58.3
Aa31LG5G9110 Aethionema arabicum HOM05D003776 ORTHO05D004459 1.4e-07 60.5 60 56.7
SEGI_19045 Sequoiadendron giganteum HOM05D003776 ORTHO05D004459 1.8e-07 60.1 60 51.7
Prupe.5G112500 Prunus persica HOM05D007447 ORTHO05D009372 2.3e-07 59.7 43 79.1
Prupe.3G304000 Prunus persica HOM05D007447 ORTHO05D009372 5.7e-06 55.1 85 49.4
HPP92_008667 Vanilla planifolia HOM05D003776 ORTHO05D004459 9.7e-06 54.3 55 56.4


User provided reference genes

Program Settings