Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3s42_20 Physcomitrium patens HOM05D003546 ORTHO05D309289 2.4e-156 555.4 274 100.0
AagrBONN_evm.TU.Sc2ySwM_344.5210 Anthoceros agrestis HOM05D003546 ORTHO05D005667 1.9e-12 77.4 270 28.1
Sc03g0010770 Simmondsia chinensis HOM05D003546 ORTHO05D005667 1.9e-12 77.4 256 27.7
CANSAT56G3227 Cannabis sativa HOM05D003546 ORTHO05D005667 9.4e-12 75.1 256 26.2
Duzib213G0800 Durio zibethinus HOM05D003546 ORTHO05D005667 9.4e-12 75.1 255 25.1
Oeu010039.1 Olea europaea HOM05D003546 ORTHO05D005667 4.7e-11 72.8 256 27.0
Migut.G00787 Erythranthe guttata HOM05D003546 ORTHO05D005667 6.1e-11 72.4 256 26.6
Thecc.07G148500 Theobroma cacao HOM05D003546 ORTHO05D005667 6.1e-11 72.4 255 25.9
ClCG07G010350 Citrullus lanatus HOM05D003546 ORTHO05D005667 1.4e-10 71.2 254 24.4
SMO119G0495 Selaginella moellendorffii HOM05D003546 ORTHO05D005667 1.8e-10 70.9 244 26.6
QL08p024489 Quercus lobata HOM05D003546 ORTHO05D005667 3.0e-10 70.1 270 25.9
RcHm_v2.0_Chr5g0028951 Rosa chinensis HOM05D003546 ORTHO05D005667 3.0e-10 70.1 261 25.3
SGA_v2.0_scaffold73G24377 Striga asiatica HOM05D003546 ORTHO05D005667 3.0e-10 70.1 256 25.4
QL07p044072 Quercus lobata HOM05D002910 ORTHO05D003235 6.7e-10 68.9 246 24.4
Mapoly0014s0091 Marchantia polymorpha HOM05D003546 ORTHO05D005667 8.8e-10 68.6 259 25.5
unitig_37.g12553 Utricularia gibba HOM05D003546 ORTHO05D005667 8.8e-10 68.6 251 27.9
Hund10394 Selenicereus undatus HOM05D003546 ORTHO05D005667 1.1e-09 68.2 256 25.0
arahy.Tifrunner.gnm1.ann1.UIE2A5 Arachis hypogaea HOM05D003546 ORTHO05D005667 1.5e-09 67.8 255 25.5
Cpa.g.sc77.106 Carica papaya HOM05D003546 ORTHO05D005667 1.5e-09 67.8 255 25.5
FAN21G0932 Fragaria x ananassa HOM05D003546 ORTHO05D005667 1.5e-09 67.8 256 26.2
MSTRG.6697 Avicennia marina HOM05D003546 ORTHO05D005667 2.0e-09 67.4 254 24.4
COL.COLO4_17394 Corchorus olitorius HOM05D003546 ORTHO05D005667 2.0e-09 67.4 257 26.1
Pp3s34_123 Physcomitrium patens HOM05D003546 ORTHO05D005667 2.0e-09 67.4 253 27.3
Dinv26695 Davidia involucrata HOM05D003546 ORTHO05D005667 2.6e-09 67.0 256 25.0
Lsat_1_v5_gn_7_100340 Lactuca sativa HOM05D003546 ORTHO05D005667 2.6e-09 67.0 257 26.5
Sed0015060 Sechium edule HOM05D003546 ORTHO05D005667 2.6e-09 67.0 254 24.8
Gohir.A08G234000 Gossypium hirsutum HOM05D003546 ORTHO05D005667 3.3e-09 66.6 255 24.3
Gohir.D08G254200 Gossypium hirsutum HOM05D003546 ORTHO05D005667 3.3e-09 66.6 255 24.3
Ca_03453_v3 Cicer arietinum L. HOM05D003546 ORTHO05D005667 5.7e-09 65.9 256 27.3
ClCG08G007600 Citrullus lanatus HOM05D002910 ORTHO05D003235 5.7e-09 65.9 275 25.5
FvH4_3g17420 Fragaria vesca HOM05D003546 ORTHO05D005667 5.7e-09 65.9 256 26.2
FAN11G2746 Fragaria x ananassa HOM05D003546 ORTHO05D005667 5.7e-09 65.9 256 26.2
FAN16G1735 Fragaria x ananassa HOM05D003546 ORTHO05D005667 5.7e-09 65.9 256 26.2
arahy.Tifrunner.gnm1.ann1.T44SL9 Arachis hypogaea HOM05D003546 ORTHO05D005667 7.4e-09 65.5 255 25.9
Gorai.004G271100 Gossypium raimondii HOM05D003546 ORTHO05D005667 7.4e-09 65.5 255 23.9
arahy.Tifrunner.gnm1.ann1.Y31H1M Arachis hypogaea HOM05D003546 ORTHO05D005667 9.7e-09 65.1 255 25.5
CsaV3_6G036560 Cucumis sativus L. HOM05D002910 ORTHO05D003235 9.7e-09 65.1 275 25.5
Manes.10G047600 Manihot esculenta HOM05D002910 ORTHO05D003235 9.7e-09 65.1 246 24.0
Ah.06g187600 Amaranthus hybridus HOM05D000137 ORTHO05D000503 1.3e-08 64.7 256 24.6
FvH4_6g16090 Fragaria vesca HOM05D002910 ORTHO05D003235 1.3e-08 64.7 267 22.1
Potri.011G114100 Populus trichocarpa HOM05D003546 ORTHO05D005667 1.3e-08 64.7 256 24.6
Sed0002936 Sechium edule HOM05D002910 ORTHO05D003235 1.3e-08 64.7 275 25.1
CARHR017740 Cardamine hirsuta HOM05D003546 ORTHO05D005667 1.7e-08 64.3 255 24.3
MELO3C019810.2 Cucumis melo HOM05D002910 ORTHO05D003235 1.7e-08 64.3 275 25.5
MD11G1273100 Malus domestica HOM05D003546 ORTHO05D005667 1.7e-08 64.3 254 23.6
Nn3g20902 Nelumbo nucifera HOM05D003546 ORTHO05D005667 1.7e-08 64.3 256 24.6
FAN02G0172 Fragaria x ananassa HOM05D002910 ORTHO05D003235 2.2e-08 63.9 264 21.6
TAR629G0142 Trochodendron aralioides HOM05D003546 ORTHO05D005667 2.2e-08 63.9 256 24.2
AT1G17160 Arabidopsis thaliana HOM05D003546 ORTHO05D005667 2.8e-08 63.5 256 24.2
Solyc07g062070.3 Solanum lycopersicum HOM05D003546 ORTHO05D005667 2.8e-08 63.5 256 25.4
PGSC0003DMG400007057 Solanum tuberosum HOM05D003546 ORTHO05D005667 2.8e-08 63.5 254 24.0
THA.LOC104813974 Tarenaya hassleriana HOM05D003546 ORTHO05D005667 3.7e-08 63.2 257 25.7
AUR62013937 Chenopodium quinoa HOM05D003546 ORTHO05D005667 4.8e-08 62.8 256 24.6
ECA236G3331 Erigeron canadensis HOM05D003546 ORTHO05D005667 4.8e-08 62.8 256 25.0
Sopen07g030330 Solanum pennellii HOM05D003546 ORTHO05D005667 4.8e-08 62.8 256 25.4
Aqoxy1G01847 Aquilegia oxysepala HOM05D003546 ORTHO05D005667 6.3e-08 62.4 256 24.6
Eucgr.F03224 Eucalyptus grandis HOM05D003546 ORTHO05D005667 6.3e-08 62.4 254 23.6
Lj8A144T67 Lonicera japonica HOM05D003546 ORTHO05D005667 6.3e-08 62.4 256 25.8
SMO163G0088 Selaginella moellendorffii HOM05D003546 ORTHO05D005667 6.3e-08 62.4 274 24.5
HanXRQChr15g0495341 Helianthus annuus HOM05D003546 ORTHO05D005667 8.2e-08 62.0 257 24.5
Os01g0665400 Oryza sativa ssp. japonica HOM05D003546 ORTHO05D005667 8.2e-08 62.0 270 25.2
TWI38G2125 Tripterygium wilfordii HOM05D003546 ORTHO05D005667 8.2e-08 62.0 257 26.5
Carub.0001s1691 Capsella rubella HOM05D003546 ORTHO05D005667 1.1e-07 61.6 256 24.2
Zm00001eb359730 Zea mays HOM05D003546 ORTHO05D005667 1.4e-07 61.2 274 26.3
ATR0256G001 Amborella trichopoda HOM05D003546 ORTHO05D005667 1.8e-07 60.8 269 27.5
Prupe.4G154400 Prunus persica HOM05D003546 ORTHO05D005667 1.8e-07 60.8 254 22.4
AL1G29390 Arabidopsis lyrata HOM05D003546 ORTHO05D005667 2.4e-07 60.5 255 23.9
BcaC07g41403 Brassica carinata HOM05D003546 ORTHO05D005667 2.4e-07 60.5 255 23.5
PSO541G1993 Papaver somniferum HOM05D003546 ORTHO05D005667 2.4e-07 60.5 256 24.2
THA.LOC104812287 Tarenaya hassleriana HOM05D003546 ORTHO05D005667 2.4e-07 60.5 257 25.3
Ciclev10005308m.g Citrus clementina HOM05D000559 ORTHO05D000596 3.1e-07 60.1 297 24.6
Lalb_Chr06g0160881 Lupinus albus HOM05D000559 ORTHO05D000596 3.1e-07 60.1 269 27.1
Aa31LG3G8270 Aethionema arabicum HOM05D000559 ORTHO05D000596 4.1e-07 59.7 300 24.7
PSO675G0773 Papaver somniferum HOM05D003546 ORTHO05D005667 4.1e-07 59.7 256 23.0
Prupe.2G151100 Prunus persica HOM05D000559 ORTHO05D000596 5.3e-07 59.3 270 25.2
Sp6g14080 Schrenkiella parvula HOM05D000559 ORTHO05D000596 5.3e-07 59.3 299 25.8
TPR.G17389 Trifolium pratense HOM05D000559 ORTHO05D000596 5.3e-07 59.3 297 24.6
Thhalv10007918m.g Eutrema salsugineum HOM05D003546 ORTHO05D005667 6.9e-07 58.9 258 23.3
DCAR_020209 Daucus carota HOM05D000559 ORTHO05D000596 1.5e-06 57.8 329 24.3
SHI19235 Sapria himalayana HOM05D003546 ORTHO05D005667 1.5e-06 57.8 264 23.9
Carub.0008s1185 Capsella rubella HOM05D000559 ORTHO05D000596 2.6e-06 57.0 299 25.8
Peaxi162Scf00111g01221 Petunia axillaris HOM05D003546 ORTHO05D005667 2.6e-06 57.0 251 22.3
Hund04684 Selenicereus undatus HOM05D000559 ORTHO05D000596 2.6e-06 57.0 269 26.8
AT5G51830 Arabidopsis thaliana HOM05D000559 ORTHO05D000596 3.4e-06 56.6 299 25.8
Lalb_Chr19g0131151 Lupinus albus HOM05D000559 ORTHO05D000596 3.4e-06 56.6 271 25.5
BolC5t30265H Brassica oleracea HOM05D003546 ORTHO05D005667 5.9e-06 55.8 85 40.0
CARHR264710 Cardamine hirsuta HOM05D000559 ORTHO05D000596 5.9e-06 55.8 297 25.3
C05p15580 Brassica napus HOM05D003546 ORTHO05D005667 7.7e-06 55.5 85 40.0


User provided reference genes

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