Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c9_9570 Physcomitrium patens HOM05D004789 ORTHO05D006078 1.6e-247 859.0 430 100.0
Pp3c15_7710 Physcomitrium patens HOM05D004789 ORTHO05D006078 9.7e-189 663.7 429 78.6
Pp3c21_670 Physcomitrium patens HOM05D004789 ORTHO05D006078 3.3e-144 515.8 416 62.7
Mapoly0151s0033 Marchantia polymorpha HOM05D004789 ORTHO05D006078 4.1e-139 498.8 396 62.9
Pp3c19_9150 Physcomitrium patens HOM05D004789 ORTHO05D006078 1.5e-136 490.3 408 62.5
ATR0661G474 Amborella trichopoda HOM05D004789 ORTHO05D006078 3.6e-135 485.7 398 61.1
SMO141G0244 Selaginella moellendorffii HOM05D004789 ORTHO05D006078 6.2e-135 485.0 394 61.9
PGR083G2717 Punica granatum HOM05D004789 ORTHO05D006078 1.4e-134 483.8 394 60.9
PGR092G0005 Punica granatum HOM05D004789 ORTHO05D006078 1.4e-134 483.8 394 60.9
PSO675G5907 Papaver somniferum HOM05D004789 ORTHO05D006078 4.0e-134 482.3 399 60.9
CDE05G3244 Ceratophyllum demersum HOM05D004789 ORTHO05D006078 6.8e-134 481.5 394 60.7
CANSAT54G2477 Cannabis sativa HOM05D004789 ORTHO05D006078 8.9e-134 481.1 394 61.4
Aqoxy2G01476 Aquilegia oxysepala HOM05D004789 ORTHO05D006078 1.5e-133 480.3 394 61.4
TAR626G0377 Trochodendron aralioides HOM05D004789 ORTHO05D006078 1.5e-133 480.3 394 60.7
Lalb_Chr03g0038671 Lupinus albus HOM05D004789 ORTHO05D006078 7.5e-133 478.0 394 59.9
Actinidia06832 Actinidia chinensis HOM05D004789 ORTHO05D006078 2.2e-132 476.5 401 60.1
vmacro19979 Vaccinium macrocarpon HOM05D004789 ORTHO05D006078 6.4e-132 474.9 401 59.9
Eucgr.C00113 Eucalyptus grandis HOM05D004789 ORTHO05D006078 8.3e-132 474.6 394 59.6
arahy.Tifrunner.gnm1.ann1.537LAH Arachis hypogaea HOM05D004789 ORTHO05D006078 1.1e-131 474.2 394 60.4
arahy.Tifrunner.gnm1.ann1.66TKXZ Arachis hypogaea HOM05D004789 ORTHO05D006078 1.1e-131 474.2 394 60.4
DCAR_020684 Daucus carota HOM05D004789 ORTHO05D006078 1.1e-131 474.2 399 59.4
Prupe.6G362000 Prunus persica HOM05D004789 ORTHO05D006078 1.1e-131 474.2 394 60.2
Sc16g0010430 Simmondsia chinensis HOM05D004789 ORTHO05D006078 1.1e-131 474.2 394 59.9
GSVIVG01019077001 Vitis vinifera HOM05D004789 ORTHO05D006078 1.1e-131 474.2 394 60.2
MD04G1245400 Malus domestica HOM05D004789 ORTHO05D006078 2.4e-131 473.0 399 58.9
Thecc.05G194100 Theobroma cacao HOM05D004789 ORTHO05D006078 2.4e-131 473.0 404 58.9
QL01p049601 Quercus lobata HOM05D004789 ORTHO05D006078 5.4e-131 471.9 394 59.1
VMungo1383G0580 Vigna mungo HOM05D004789 ORTHO05D006078 5.4e-131 471.9 394 60.2
Gorai.004G263000 Gossypium raimondii HOM05D004789 ORTHO05D006078 7.0e-131 471.5 397 60.2
Manes.12G005100 Manihot esculenta HOM05D004789 ORTHO05D006078 9.2e-131 471.1 397 60.7
PGR119G2005 Punica granatum HOM05D004789 ORTHO05D006078 9.2e-131 471.1 394 59.4
CSS0025571 Camellia sinensis var. sinensis HOM05D004789 ORTHO05D006078 1.2e-130 470.7 394 59.6
CSS0046891 Camellia sinensis var. sinensis HOM05D004789 ORTHO05D006078 1.2e-130 470.7 394 59.6
Gohir.D08G246500 Gossypium hirsutum HOM05D004789 ORTHO05D006078 1.2e-130 470.7 397 60.2
Gohir.A08G226100 Gossypium hirsutum HOM05D004789 ORTHO05D006078 1.6e-130 470.3 397 60.2
CiPaw.07G081200 Carya illinoinensis HOM05D004789 ORTHO05D006078 2.7e-130 469.5 394 59.6
COL.COLO4_38035 Corchorus olitorius HOM05D004789 ORTHO05D006078 2.7e-130 469.5 397 59.9
Dinv29093 Davidia involucrata HOM05D004789 ORTHO05D006078 2.7e-130 469.5 394 59.9
EL10Ac4g09992 Beta vulgaris HOM05D004789 ORTHO05D006078 3.5e-130 469.2 392 59.7
Migut.F02116 Erythranthe guttata HOM05D004789 ORTHO05D006078 6.0e-130 468.4 415 58.1
MBI11_g05799_MAGBIO Magnolia biondii HOM05D004789 ORTHO05D006078 6.0e-130 468.4 390 59.2
CAN.G1807.2 Capsicum annuum HOM05D004789 ORTHO05D006078 7.8e-130 468.0 394 59.9
Duzib106G1853 Durio zibethinus HOM05D004789 ORTHO05D006078 7.8e-130 468.0 397 59.4
TPR.G10693 Trifolium pratense HOM05D004789 ORTHO05D006078 7.8e-130 468.0 394 59.1
Hund07352 Selenicereus undatus HOM05D004789 ORTHO05D006078 1.0e-129 467.6 394 59.6
Sopen04g025480 Solanum pennellii HOM05D004789 ORTHO05D006078 1.0e-129 467.6 394 59.9
Hma1.2p1_0609F.1_g188420 Hydrangea macrophylla HOM05D004789 ORTHO05D006078 1.3e-129 467.2 401 58.9
RcHm_v2.0_Chr3g0447811 Rosa chinensis HOM05D004789 ORTHO05D006078 1.3e-129 467.2 399 58.9
Solyc04g056540.3 Solanum lycopersicum HOM05D004789 ORTHO05D006078 1.3e-129 467.2 394 59.6
Ca_07992_v3 Cicer arietinum L. HOM05D004789 ORTHO05D006078 1.7e-129 466.8 394 59.1
Ciclev10011346m.g Citrus clementina HOM05D004789 ORTHO05D006078 1.7e-129 466.8 414 58.2
Medtr7g080117 Medicago truncatula HOM05D004789 ORTHO05D006078 3.0e-129 466.1 394 59.1
Hund21904 Selenicereus undatus HOM05D004789 ORTHO05D006078 3.9e-129 465.7 394 59.1
Oeu009739.1 Olea europaea HOM05D004789 ORTHO05D006078 5.1e-129 465.3 394 58.9
Potri.019G054000 Populus trichocarpa HOM05D004789 ORTHO05D006078 5.1e-129 465.3 397 58.4
MD13G1061000 Malus domestica HOM05D004789 ORTHO05D006078 6.6e-129 464.9 401 58.1
Nitab4.5_0000083g0070 Nicotiana tabacum HOM05D004789 ORTHO05D006078 8.6e-129 464.5 394 58.9
Phvul.008G053900 Phaseolus vulgaris HOM05D004789 ORTHO05D006078 1.1e-128 464.2 394 58.6
CARHR156030 Cardamine hirsuta HOM05D004789 ORTHO05D006078 1.9e-128 463.4 396 59.6
Nitab4.5_0001435g0010 Nicotiana tabacum HOM05D004789 ORTHO05D006078 2.5e-128 463.0 394 58.9
FvH4_6g00440 Fragaria vesca HOM05D004789 ORTHO05D006078 5.6e-128 461.8 394 59.4
FAN09G1869 Fragaria x ananassa HOM05D004789 ORTHO05D006078 5.6e-128 461.8 394 59.4
THA.LOC104801872 Tarenaya hassleriana HOM05D004789 ORTHO05D006078 5.6e-128 461.8 394 59.1
AUR62000303 Chenopodium quinoa HOM05D004789 ORTHO05D006078 9.5e-128 461.1 408 57.4
AT3G47390 Arabidopsis thaliana HOM05D004789 ORTHO05D006078 1.6e-127 460.3 396 59.3
Rhsim05G0170800 Rhododendron simsii HOM05D004789 ORTHO05D006078 1.6e-127 460.3 390 59.5
Sp5g14500 Schrenkiella parvula HOM05D004789 ORTHO05D006078 1.6e-127 460.3 396 58.8
Lsat_1_v5_gn_3_24661 Lactuca sativa HOM05D004789 ORTHO05D006078 2.1e-127 459.9 394 59.4
AL5G26580 Arabidopsis lyrata HOM05D004789 ORTHO05D006078 2.8e-127 459.5 396 59.1
A06p20290 Brassica napus HOM05D004789 ORTHO05D006078 4.7e-127 458.8 395 59.7
HanXRQChr17g0538711 Helianthus annuus HOM05D004789 ORTHO05D006078 4.7e-127 458.8 394 59.4
Atru.BG.270.p Acer truncatum HOM05D004789 ORTHO05D006078 6.2e-127 458.4 397 59.7
BraA06t25110Z Brassica rapa HOM05D004789 ORTHO05D006078 6.2e-127 458.4 397 59.4
Thhalv10010225m.g Eutrema salsugineum HOM05D004789 ORTHO05D006078 6.2e-127 458.4 396 59.3
Glyma.18G242600 Glycine max HOM05D004789 ORTHO05D006078 8.1e-127 458.0 394 58.4
BcaC01g01832 Brassica carinata HOM05D004789 ORTHO05D006078 1.1e-126 457.6 394 59.4
Carub.0005s1348 Capsella rubella HOM05D004789 ORTHO05D006078 1.1e-126 457.6 399 59.1
BcaB01g00932 Brassica carinata HOM05D004789 ORTHO05D006078 1.4e-126 457.2 396 59.3
Cc09_g03720 Coffea canephora HOM05D004789 ORTHO05D006078 1.8e-126 456.8 415 56.4
CBR_g21226 Chara braunii HOM05D004789 ORTHO05D006078 2.3e-126 456.4 399 57.6
Glyma.09G249800 Glycine max HOM05D004789 ORTHO05D006078 4.0e-126 455.7 394 58.1
ClCG03G010600 Citrullus lanatus HOM05D004789 ORTHO05D006078 1.2e-125 454.1 401 56.9
SGA_v2.0_scaffold14G07118 Striga asiatica HOM05D004789 ORTHO05D006078 1.2e-125 454.1 394 58.6
Aa31csc271G10 Aethionema arabicum HOM05D004789 ORTHO05D006078 1.5e-125 453.8 395 58.5
HanXRQChr06g0173981 Helianthus annuus HOM05D004789 ORTHO05D006078 1.5e-125 453.8 402 57.7
SGA_v2.0_scaffold11G05812 Striga asiatica HOM05D004789 ORTHO05D006078 2.0e-125 453.4 398 58.0
C03p71470 Brassica napus HOM05D004789 ORTHO05D006078 2.6e-125 453.0 395 59.2
BolC3t19438H Brassica oleracea HOM05D004789 ORTHO05D006078 2.6e-125 453.0 395 59.2
MELO3C010048.2 Cucumis melo HOM05D004789 ORTHO05D006078 3.4e-125 452.6 397 57.2
AUR62006648 Chenopodium quinoa HOM05D004789 ORTHO05D006078 5.8e-125 451.8 411 56.2
CsaV3_1G044470 Cucumis sativus L. HOM05D004789 ORTHO05D006078 5.8e-125 451.8 401 57.1
HanXRQChr06g0174041 Helianthus annuus HOM05D004789 ORTHO05D006078 1.9e-123 446.8 403 57.6
Sed0000944 Sechium edule HOM05D004789 ORTHO05D006078 3.2e-123 446.0 399 58.1
Sabra19G0063100 Salix brachista HOM05D004789 ORTHO05D006078 4.1e-123 445.7 397 56.9
TWI36G0056 Tripterygium wilfordii HOM05D004789 ORTHO05D006078 4.1e-123 445.7 424 55.0
Zm00001eb240960 Zea mays HOM05D004789 ORTHO05D006078 2.7e-122 443.0 398 56.8
Aa31sc60G10 Aethionema arabicum HOM05D004789 ORTHO05D006078 4.6e-122 442.2 395 58.5
Lj1g0000623 Lotus japonicus HOM05D004789 ORTHO05D006078 4.6e-122 442.2 394 57.6
AagrBONN_evm.TU.Sc2ySwM_117.447 Anthoceros agrestis HOM05D004789 ORTHO05D006078 6.0e-122 441.8 356 62.1
Os02g0473000 Oryza sativa ssp. japonica HOM05D004789 ORTHO05D006078 1.7e-121 440.3 394 56.9
unitig_0.g1013 Utricularia gibba HOM05D004789 ORTHO05D006078 2.8e-119 433.0 426 54.0
Ah.06g195430 Amaranthus hybridus HOM05D004789 ORTHO05D006078 6.2e-119 431.8 432 51.9
Peaxi162Scf00048g00311 Petunia axillaris HOM05D004789 ORTHO05D006078 6.2e-119 431.8 417 55.4
MELO3C010050.2 Cucumis melo HOM05D004789 ORTHO05D006078 4.9e-116 422.2 445 51.0
Haze_04568 Corylus avellana HOM05D004789 ORTHO05D006078 3.2e-115 419.5 492 47.2
HPP92_008120 Vanilla planifolia HOM05D004789 ORTHO05D006078 1.3e-113 414.1 394 53.0
PSO017G6674 Papaver somniferum HOM05D004789 ORTHO05D006078 2.8e-111 406.4 399 53.6
Sed0025011 Sechium edule HOM05D004789 ORTHO05D006078 4.9e-108 395.6 401 52.4
SalBow1G3031 Salvia bowleyana HOM05D004789 ORTHO05D006078 3.0e-105 386.3 322 59.9
Lj2C731T11 Lonicera japonica HOM05D004789 ORTHO05D006078 1.2e-101 374.4 324 57.4
PRCOL_00003473 Prasinoderma coloniale HOM05D004789 ORTHO05D006078 3.4e-101 372.9 432 47.7
Aa31sc348G30 Aethionema arabicum HOM05D004789 ORTHO05D006078 5.6e-96 355.5 319 55.8
MCO11G683 Micromonas commoda HOM05D004789 ORTHO05D006078 8.1e-95 351.7 410 48.3
Psat3g102920 Pisum sativum HOM05D004789 ORTHO05D006078 5.3e-94 349.0 279 61.6
SMO145G0191 Selaginella moellendorffii HOM05D004789 ORTHO05D006078 2.0e-93 347.1 324 57.1
Cre17.g728950 Chlamydomonas reinhardtii HOM05D004789 ORTHO05D006078 1.3e-87 327.8 614 36.0
Hma1.2p1_0609F.1_g188430 Hydrangea macrophylla HOM05D004789 ORTHO05D006078 6.5e-84 315.5 252 61.9
ATR0804G049 Amborella trichopoda HOM05D004789 ORTHO05D006078 2.1e-82 310.5 334 50.6
SEGI_29409 Sequoiadendron giganteum HOM05D004789 ORTHO05D006078 6.5e-76 288.9 213 68.5
Lsat_1_v5_gn_8_109000 Lactuca sativa HOM05D004789 ORTHO05D006078 6.1e-74 282.3 215 64.7
Ah.01g017460 Amaranthus hybridus HOM05D004789 ORTHO05D006078 1.4e-73 281.2 326 48.5
SHI13715 Sapria himalayana HOM05D004789 ORTHO05D006078 2.5e-72 276.9 213 63.4
Nn1g09737 Nelumbo nucifera HOM05D004789 ORTHO05D006078 5.7e-72 275.8 195 69.2
PGSC0003DMG400010518 Solanum tuberosum HOM05D004789 ORTHO05D006078 4.5e-69 266.2 197 67.5
FAN14G5139 Fragaria x ananassa HOM05D004789 ORTHO05D006078 5.7e-64 249.2 240 54.6
SEGI_33759 Sequoiadendron giganteum HOM05D004789 ORTHO05D006078 1.8e-57 227.6 157 70.1
Cpa.g.sc2508.1 Carica papaya HOM05D004789 ORTHO05D006078 1.2e-53 214.9 157 65.0
Lsat_1_v5_gn_7_32541 Lactuca sativa HOM05D004789 ORTHO05D006078 7.2e-51 205.7 197 55.8
Nn1g09776 Nelumbo nucifera HOM05D004789 ORTHO05D006078 1.5e-48 198.0 202 51.0
SEGI_15354 Sequoiadendron giganteum HOM05D004789 ORTHO05D006078 4.4e-48 196.4 166 58.4
Cpa.g.sc39.15 Carica papaya HOM05D004789 ORTHO05D006078 4.0e-41 173.3 164 53.7
Hund01346 Selenicereus undatus HOM05D004789 ORTHO05D006078 7.3e-27 125.9 157 43.3
Hund01450 Selenicereus undatus HOM05D004789 ORTHO05D006078 3.6e-26 123.6 107 53.3
Hund24180 Selenicereus undatus HOM05D004789 ORTHO05D006078 6.8e-25 119.4 95 57.9
Hund01197 Selenicereus undatus HOM05D004789 ORTHO05D006078 4.4e-24 116.7 95 56.8
Pp3s30_1010 Physcomitrium patens HOM05D000723 ORTHO05D004839 2.9e-23 114.0 214 32.7
ECA236G3464 Erigeron canadensis HOM05D004789 ORTHO05D006078 1.6e-21 108.2 116 50.0
SEGI_24407 Sequoiadendron giganteum HOM05D004789 ORTHO05D006078 4.6e-21 106.7 99 51.5
Actinidia39978 Actinidia chinensis HOM05D004789 ORTHO05D006078 5.0e-20 103.2 73 71.2
Cpa.g.sc39.16 Carica papaya HOM05D004789 ORTHO05D006078 4.9e-15 86.7 73 60.3
SalBow1G4379 Salvia bowleyana HOM05D004789 ORTHO05D006078 4.9e-15 86.7 83 54.2
CBR_g12386 Chara braunii HOM05D005010 ORTHO05D006065 2.7e-13 80.9 227 28.2
Mapoly0008s0021 Marchantia polymorpha HOM05D005010 ORTHO05D006065 2.7e-13 80.9 228 30.3
Pp3c7_11900 Physcomitrium patens HOM05D005010 ORTHO05D006065 4.6e-13 80.1 225 27.6
Hma1.2p1_0199F.1_g085710 Hydrangea macrophylla HOM05D004789 ORTHO05D006078 5.6e-11 73.2 64 56.2
AagrBONN_evm.TU.Sc2ySwM_228.296 Anthoceros agrestis HOM05D005010 ORTHO05D006065 1.2e-08 65.5 193 29.0
Sopen01g035780 Solanum pennellii HOM05D004789 ORTHO05D051096 7.6e-08 62.8 55 60.0
Solyc01g089930.2 Solanum lycopersicum HOM05D004789 ORTHO05D051096 9.9e-08 62.4 55 60.0
SEGI_28254 Sequoiadendron giganteum HOM05D004789 ORTHO05D006078 4.9e-07 60.1 103 34.0
MD07G1084500 Malus domestica HOM05D005010 ORTHO05D006065 3.2e-06 57.4 216 23.6
Hund12586 Selenicereus undatus HOM05D004789 ORTHO05D006078 9.2e-06 55.8 84 36.9


User provided reference genes

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