Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c9_4090 Physcomitrium patens HOM05D004729 ORTHO05D005451 0.0e+00 1137.1 644 100.0
AagrBONN_evm.TU.Sc2ySwM_117.2782 Anthoceros agrestis HOM05D004729 ORTHO05D005451 2.0e-105 387.5 296 64.2
Mapoly0100s0036 Marchantia polymorpha HOM05D004729 ORTHO05D005451 2.6e-105 387.1 299 62.9
Nn1g08655 Nelumbo nucifera HOM05D004729 ORTHO05D005451 2.9e-96 357.1 329 51.4
TAR628G0451 Trochodendron aralioides HOM05D004729 ORTHO05D005451 1.4e-95 354.8 331 51.1
MSTRG.25403 Avicennia marina HOM05D004729 ORTHO05D005451 3.2e-95 353.6 337 51.3
Dinv07919 Davidia involucrata HOM05D004729 ORTHO05D005451 9.3e-95 352.1 333 52.0
Gohir.D05G234700 Gossypium hirsutum HOM05D004729 ORTHO05D005451 4.6e-94 349.7 334 51.8
GSVIVG01008929001 Vitis vinifera HOM05D004729 ORTHO05D005451 4.6e-94 349.7 328 52.4
Migut.C01178 Erythranthe guttata HOM05D004729 ORTHO05D005451 1.3e-93 348.2 338 50.6
MD15G1356700 Malus domestica HOM05D004729 ORTHO05D005451 1.8e-93 347.8 317 54.3
Prupe.1G503900 Prunus persica HOM05D004729 ORTHO05D005451 1.8e-93 347.8 334 51.2
FvH4_2g26260 Fragaria vesca HOM05D004729 ORTHO05D005451 2.3e-93 347.4 340 51.8
Duzib116G0142 Durio zibethinus HOM05D004729 ORTHO05D005451 3.0e-93 347.1 330 51.5
CiPaw.05G227200 Carya illinoinensis HOM05D004729 ORTHO05D005451 3.9e-93 346.7 335 51.0
Potri.005G173000 Populus trichocarpa HOM05D004729 ORTHO05D005451 3.9e-93 346.7 332 52.1
SGA_v2.0_scaffold52G19009 Striga asiatica HOM05D004729 ORTHO05D005451 3.9e-93 346.7 339 49.9
CSS0005799 Camellia sinensis var. sinensis HOM05D004729 ORTHO05D005451 5.1e-93 346.3 337 49.9
PSO528G0069 Papaver somniferum HOM05D004729 ORTHO05D005451 5.1e-93 346.3 328 51.2
Ciclev10001583m.g Citrus clementina HOM05D004729 ORTHO05D005451 6.7e-93 345.9 330 49.4
Aqoxy5G04147 Aquilegia oxysepala HOM05D004729 ORTHO05D005451 8.7e-93 345.5 333 52.6
PSO170G2478 Papaver somniferum HOM05D004729 ORTHO05D005451 8.7e-93 345.5 328 50.9
Aqoxy1G01637 Aquilegia oxysepala HOM05D004729 ORTHO05D005451 1.1e-92 345.1 333 52.6
Gohir.A05G236400 Gossypium hirsutum HOM05D004729 ORTHO05D005451 1.1e-92 345.1 334 50.9
TAR151G0002 Trochodendron aralioides HOM05D004729 ORTHO05D005451 1.5e-92 344.7 321 51.4
AL1G51210 Arabidopsis lyrata HOM05D004729 ORTHO05D005451 1.9e-92 344.4 324 51.9
Eucgr.F03750 Eucalyptus grandis HOM05D004729 ORTHO05D005451 1.9e-92 344.4 331 51.1
CANSAT78G0882 Cannabis sativa HOM05D004729 ORTHO05D005451 2.5e-92 344.0 322 52.8
BcaB05g24351 Brassica carinata HOM05D004729 ORTHO05D005451 3.3e-92 343.6 326 51.8
CSS0018062 Camellia sinensis var. sinensis HOM05D004729 ORTHO05D005451 4.3e-92 343.2 339 49.3
Thecc.08G118600 Theobroma cacao HOM05D004729 ORTHO05D005451 4.3e-92 343.2 348 49.1
HPP92_002257 Vanilla planifolia HOM05D004729 ORTHO05D005451 4.3e-92 343.2 339 51.0
BcaC03g14925 Brassica carinata HOM05D004729 ORTHO05D005451 1.3e-91 341.7 325 52.9
BraA02t06545Z Brassica rapa HOM05D004729 ORTHO05D005451 1.6e-91 341.3 325 52.9
CARHR115540 Cardamine hirsuta HOM05D004729 ORTHO05D005451 2.2e-91 340.9 324 51.9
Nitab4.5_0000494g0050 Nicotiana tabacum HOM05D004729 ORTHO05D005451 2.2e-91 340.9 320 50.6
Potri.002G087700 Populus trichocarpa HOM05D004729 ORTHO05D005451 2.2e-91 340.9 325 51.4
AL4G17320 Arabidopsis lyrata HOM05D004729 ORTHO05D005451 2.8e-91 340.5 324 52.2
C02p24210 Brassica napus HOM05D004729 ORTHO05D005451 2.8e-91 340.5 325 52.9
Sp1g31520 Schrenkiella parvula HOM05D004729 ORTHO05D005451 2.8e-91 340.5 337 50.7
Cc10_g10550 Coffea canephora HOM05D004729 ORTHO05D005451 4.8e-91 339.7 324 49.7
THA.LOC104817066 Tarenaya hassleriana HOM05D004729 ORTHO05D005451 4.8e-91 339.7 323 52.0
Carub.0004s0560 Capsella rubella HOM05D004729 ORTHO05D005451 8.2e-91 339.0 325 51.1
A02p14780 Brassica napus HOM05D004729 ORTHO05D005451 1.8e-90 337.8 325 52.3
MD08G1169900 Malus domestica HOM05D004729 ORTHO05D005451 1.8e-90 337.8 333 51.1
unitig_46.g18427 Utricularia gibba HOM05D004729 ORTHO05D005451 1.8e-90 337.8 308 54.5
BolC2t08529H Brassica oleracea HOM05D004729 ORTHO05D005451 2.4e-90 337.4 325 52.3
Carub.0004s0549 Capsella rubella HOM05D004729 ORTHO05D005451 3.1e-90 337.0 327 51.7
RcHm_v2.0_Chr6g0294871 Rosa chinensis HOM05D004729 ORTHO05D005451 3.1e-90 337.0 342 49.1
Thhalv10027838m.g Eutrema salsugineum HOM05D004729 ORTHO05D005451 4.1e-90 336.7 331 50.5
Manes.02G159900 Manihot esculenta HOM05D004729 ORTHO05D005451 4.1e-90 336.7 333 50.2
Psat5g133600 Pisum sativum HOM05D004729 ORTHO05D005451 5.3e-90 336.3 320 53.8
TWI56G0049 Tripterygium wilfordii HOM05D004729 ORTHO05D005451 2.0e-89 334.3 343 48.4
Phvul.009G121400 Phaseolus vulgaris HOM05D004729 ORTHO05D005451 7.7e-89 332.4 317 51.7
PGR042G2886 Punica granatum HOM05D004729 ORTHO05D005451 7.7e-89 332.4 352 48.0
Sopen11g008240 Solanum pennellii HOM05D004729 ORTHO05D005451 7.7e-89 332.4 306 50.7
Gorai.009G243000 Gossypium raimondii HOM05D004729 ORTHO05D005451 1.0e-88 332.0 326 50.6
Os02g0167000 Oryza sativa ssp. japonica HOM05D004729 ORTHO05D005451 1.0e-88 332.0 308 52.6
Medtr3g073010 Medicago truncatula HOM05D004729 ORTHO05D005451 1.3e-88 331.6 318 52.8
Solyc11g013200.2 Solanum lycopersicum HOM05D004729 ORTHO05D005451 1.3e-88 331.6 277 54.5
Duzib093G1993 Durio zibethinus HOM05D004729 ORTHO05D005451 1.7e-88 331.3 322 51.6
Cpa.g.sc36.9 Carica papaya HOM05D004729 ORTHO05D005451 2.2e-88 330.9 322 50.3
VMungo1309G0261 Vigna mungo HOM05D004729 ORTHO05D005451 2.2e-88 330.9 317 51.4
Ah.05g172360 Amaranthus hybridus HOM05D004729 ORTHO05D005451 3.8e-88 330.1 298 53.4
Lalb_Chr23g0270821 Lupinus albus HOM05D004729 ORTHO05D005451 3.8e-88 330.1 333 48.3
Zm00001eb232860 Zea mays HOM05D004729 ORTHO05D005451 5.0e-88 329.7 310 51.9
CAN.G321.55 Capsicum annuum HOM05D004729 ORTHO05D005451 6.5e-88 329.3 306 51.3
MBI06_g01065_MAGBIO Magnolia biondii HOM05D004729 ORTHO05D005451 6.5e-88 329.3 324 50.6
arahy.Tifrunner.gnm1.ann1.CLQ5CM Arachis hypogaea HOM05D004729 ORTHO05D005451 1.1e-87 328.6 323 50.2
SalBow7G0963 Salvia bowleyana HOM05D004729 ORTHO05D005451 1.1e-87 328.6 324 50.0
Glyma.06G109600 Glycine max HOM05D004729 ORTHO05D005451 1.4e-87 328.2 317 52.7
ATR0684G041 Amborella trichopoda HOM05D004729 ORTHO05D005451 1.9e-87 327.8 313 51.8
FAN24G1570 Fragaria x ananassa HOM05D004729 ORTHO05D005451 9.4e-87 325.5 327 51.1
Peaxi162Scf00679g00006 Petunia axillaris HOM05D004729 ORTHO05D005451 9.4e-87 325.5 323 50.8
SGA_v2.0_scaffold24G10496 Striga asiatica HOM05D004729 ORTHO05D005451 9.4e-87 325.5 313 49.2
Glyma.04G252900 Glycine max HOM05D004729 ORTHO05D005451 1.2e-86 325.1 317 52.7
MELO3C012993.2 Cucumis melo HOM05D004729 ORTHO05D005451 1.6e-86 324.7 299 50.8
Lj1g0017363 Lotus japonicus HOM05D004729 ORTHO05D005451 2.7e-86 323.9 319 51.4
Actinidia23053 Actinidia chinensis HOM05D004729 ORTHO05D005451 3.6e-86 323.6 333 48.3
FAN15G1542 Fragaria x ananassa HOM05D004729 ORTHO05D005451 3.6e-86 323.6 329 49.8
CsaV3_3G023700 Cucumis sativus L. HOM05D004729 ORTHO05D005451 6.1e-86 322.8 299 50.8
arahy.Tifrunner.gnm1.ann1.J2YLH9 Arachis hypogaea HOM05D004729 ORTHO05D005451 7.9e-86 322.4 323 49.2
ECA236G4997 Erigeron canadensis HOM05D004729 ORTHO05D005451 1.0e-85 322.0 328 50.0
C09p08700 Brassica napus HOM05D004729 ORTHO05D005451 1.8e-85 321.2 275 54.9
FAN27G3155 Fragaria x ananassa HOM05D004729 ORTHO05D005451 2.3e-85 320.9 326 50.0
Lsat_1_v5_gn_8_107920 Lactuca sativa HOM05D004729 ORTHO05D005451 1.1e-84 318.5 334 47.6
CAN.G630.60 Capsicum annuum HOM05D004729 ORTHO05D005451 3.3e-84 317.0 306 52.3
DCAR_024544 Daucus carota HOM05D004729 ORTHO05D005451 3.3e-84 317.0 310 50.0
Sc23g0000860 Simmondsia chinensis HOM05D004729 ORTHO05D005451 7.4e-84 315.8 309 49.5
Aa31LG7G12040 Aethionema arabicum HOM05D004729 ORTHO05D005451 9.7e-84 315.5 321 49.2
CDE08G0072 Ceratophyllum demersum HOM05D004729 ORTHO05D005451 9.7e-84 315.5 321 47.7
DCAR_024606 Daucus carota HOM05D004729 ORTHO05D005451 2.2e-83 314.3 306 49.3
Hund27047 Selenicereus undatus HOM05D004729 ORTHO05D005451 3.7e-83 313.5 319 50.5
AUR62023623 Chenopodium quinoa HOM05D004729 ORTHO05D005451 6.3e-83 312.8 261 57.1
HanXRQChr06g0181001 Helianthus annuus HOM05D004729 ORTHO05D005451 1.8e-82 311.2 329 48.9
BolC9t53782H Brassica oleracea HOM05D004729 ORTHO05D005451 1.5e-81 308.1 318 48.1
BcaC04g23401 Brassica carinata HOM05D004729 ORTHO05D005451 5.9e-81 306.2 289 51.6
Thhalv10004827m.g Eutrema salsugineum HOM05D004729 ORTHO05D005451 2.2e-80 304.3 241 60.2
Sed0026543 Sechium edule HOM05D004729 ORTHO05D005451 1.0e-77 295.4 261 52.1
SMO356G0070 Selaginella moellendorffii HOM05D004729 ORTHO05D005451 1.4e-77 295.0 270 56.3
Lsat_1_v5_gn_3_63181 Lactuca sativa HOM05D004729 ORTHO05D005451 1.1e-76 292.0 321 45.8
Oeu017724.4 Olea europaea HOM05D004729 ORTHO05D005451 1.1e-76 292.0 320 46.6
SHI32261 Sapria himalayana HOM05D004729 ORTHO05D005451 2.0e-76 291.2 316 47.5
CBR_g4408 Chara braunii HOM05D004729 ORTHO05D005451 1.3e-75 288.5 291 49.5
Lj4C592G4 Lonicera japonica HOM05D004729 ORTHO05D005451 1.7e-75 288.1 269 50.6
QL09p035890 Quercus lobata HOM05D004729 ORTHO05D005451 1.7e-75 288.1 267 53.2
AT1G37150 Arabidopsis thaliana HOM05D004729 ORTHO05D005451 8.2e-75 285.8 289 47.4
Haze_00501 Corylus avellana HOM05D004729 ORTHO05D005451 7.0e-74 282.7 343 44.0
Nitab4.5_0000193g0110 Nicotiana tabacum HOM05D004729 ORTHO05D005451 9.1e-74 282.3 349 43.6
Atru.chr13.1337 Acer truncatum HOM05D004729 ORTHO05D005451 4.5e-73 280.0 275 50.2
Atru.chr13.1380 Acer truncatum HOM05D004729 ORTHO05D005451 4.5e-73 280.0 275 50.2
AT2G25710 Arabidopsis thaliana HOM05D004729 ORTHO05D005451 2.9e-72 277.3 261 51.0
Oeu032968.2 Olea europaea HOM05D004729 ORTHO05D005451 1.5e-71 275.0 238 52.9
AUR62029101 Chenopodium quinoa HOM05D004729 ORTHO05D005451 4.2e-71 273.5 261 52.5
COL.COLO4_38234 Corchorus olitorius HOM05D004729 ORTHO05D005451 7.2e-71 272.7 280 48.2
Peaxi162Scf00412g00069 Petunia axillaris HOM05D004729 ORTHO05D005451 3.6e-70 270.4 301 45.2
Hma1.2p1_0542F.1_g174920 Hydrangea macrophylla HOM05D004729 ORTHO05D005451 5.2e-69 266.5 237 53.6
EL10Ac1g00023 Beta vulgaris HOM05D004729 ORTHO05D005451 6.7e-69 266.2 340 44.4
FAN18G3003 Fragaria x ananassa HOM05D004729 ORTHO05D005451 3.3e-68 263.8 319 45.5
ClCG11G010630 Citrullus lanatus HOM05D004729 ORTHO05D005451 4.8e-67 260.0 302 43.4
TPR.G22343 Trifolium pratense HOM05D004729 ORTHO05D005451 1.4e-61 241.9 248 50.0
PRCOL_00005327 Prasinoderma coloniale HOM05D004729 ORTHO05D005451 1.8e-61 241.5 263 49.0
Aa31LG6G9140 Aethionema arabicum HOM05D004729 ORTHO05D005451 6.8e-61 239.6 207 56.0
BcaNung01386 Brassica carinata HOM05D004729 ORTHO05D005451 1.8e-58 231.5 200 51.0
Lj3g0025484 Lotus japonicus HOM05D004729 ORTHO05D005451 7.7e-57 226.1 199 55.3
Cre09.g406000 Chlamydomonas reinhardtii HOM05D004729 ORTHO05D005451 9.4e-55 219.2 289 41.9
MCO05G148 Micromonas commoda HOM05D004729 ORTHO05D005451 8.0e-54 216.1 259 44.8
Nn5g28096 Nelumbo nucifera HOM05D004729 ORTHO05D005451 1.4e-53 215.3 306 40.2
SEGI_13253 Sequoiadendron giganteum HOM05D004729 ORTHO05D005451 3.5e-49 200.7 155 59.4
SalBow7G1557 Salvia bowleyana HOM05D004729 ORTHO05D005451 1.0e-48 199.1 199 49.2
FvH4_5g31361 Fragaria vesca HOM05D004729 ORTHO05D005451 3.8e-48 197.2 177 52.5
CSS0041333 Camellia sinensis var. sinensis HOM05D004729 ORTHO05D005451 5.0e-48 196.8 151 60.3
Cfa026220 Carpinus fangiana HOM05D004729 ORTHO05D005451 1.7e-43 181.8 300 40.0
Rhsim11G0066000 Rhododendron simsii HOM05D004729 ORTHO05D005451 6.8e-37 159.8 330 33.0
A09p07790 Brassica napus HOM05D004729 ORTHO05D005451 3.4e-36 157.5 210 41.9
BraA09t36427Z Brassica rapa HOM05D004729 ORTHO05D005451 1.7e-35 155.2 208 41.3
arahy.Tifrunner.gnm1.ann1.XVDB66 Arachis hypogaea HOM05D004729 ORTHO05D005451 3.2e-34 151.0 139 51.8
Nn1g08666 Nelumbo nucifera HOM05D004729 ORTHO05D005451 1.6e-33 148.7 173 43.9
Aqoxy356s001 Aquilegia oxysepala HOM05D004729 ORTHO05D005451 1.3e-32 145.6 130 55.4
SEGI_02892 Sequoiadendron giganteum HOM05D004729 ORTHO05D005451 8.6e-32 142.9 165 48.5
Manes.18G073729 Manihot esculenta HOM05D004729 ORTHO05D005451 4.3e-31 140.6 200 41.5
Haze_27035 Corylus avellana HOM05D000050 ORTHO05D005451 6.2e-22 110.2 260 30.4
TPR.G675 Trifolium pratense HOM05D004729 ORTHO05D005451 3.5e-17 94.4 81 58.0
FvH4_5g31362 Fragaria vesca HOM05D004729 ORTHO05D005451 2.9e-11 74.7 128 35.2
arahy.Tifrunner.gnm1.ann1.M1Z3QL Arachis hypogaea HOM05D004729 ORTHO05D005451 9.3e-10 69.7 111 38.7
Lalb_Chr11g0065751 Lupinus albus HOM05D004729 ORTHO05D005451 4.6e-09 67.4 53 52.8


User provided reference genes

Program Settings