Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c9_3640 Physcomitrium patens HOM05D004578 ORTHO05D005529 2.0e-247 858.6 429 100.0
SEGI_31206 Sequoiadendron giganteum HOM05D004578 ORTHO05D005529 1.8e-134 483.4 413 57.4
SEGI_11947 Sequoiadendron giganteum HOM05D004578 ORTHO05D005529 5.2e-134 481.9 406 58.1
Mapoly0152s0014 Marchantia polymorpha HOM05D004578 ORTHO05D005529 6.0e-130 468.4 410 56.1
AagrBONN_evm.TU.Sc2ySwM_368.3376 Anthoceros agrestis HOM05D004578 ORTHO05D005529 1.5e-117 427.2 383 56.1
SMO115G0125 Selaginella moellendorffii HOM05D004578 ORTHO05D005529 3.4e-117 426.0 418 50.7
MBI16_g05839_MAGBIO Magnolia biondii HOM05D004578 ORTHO05D005529 5.8e-109 398.7 412 49.8
PSO170G4894 Papaver somniferum HOM05D004578 ORTHO05D005529 4.9e-108 395.6 412 50.2
Nn8g40733 Nelumbo nucifera HOM05D004578 ORTHO05D005529 1.1e-107 394.4 420 49.5
CANSAT25G1430 Cannabis sativa HOM05D004578 ORTHO05D005529 1.9e-107 393.7 418 46.9
Duzib168G2341 Durio zibethinus HOM05D004578 ORTHO05D005529 1.6e-106 390.6 404 49.3
Cc08_g06480 Coffea canephora HOM05D004578 ORTHO05D005529 2.1e-106 390.2 416 48.6
TAR625G0669 Trochodendron aralioides HOM05D004578 ORTHO05D005529 2.1e-106 390.2 413 48.4
COL.COLO4_19019 Corchorus olitorius HOM05D004578 ORTHO05D005529 7.8e-106 388.3 409 48.2
PSO063G3790 Papaver somniferum HOM05D004578 ORTHO05D005529 1.3e-105 387.5 418 48.6
Sp4g03570 Schrenkiella parvula HOM05D004578 ORTHO05D005529 1.3e-105 387.5 406 48.8
Haze_21761 Corylus avellana HOM05D004578 ORTHO05D005529 1.7e-105 387.1 406 49.3
Eucgr.C04012 Eucalyptus grandis HOM05D004578 ORTHO05D005529 5.1e-105 385.6 419 48.2
CARHR117360 Cardamine hirsuta HOM05D004578 ORTHO05D005529 1.9e-104 383.6 408 47.8
vmacro18918 Vaccinium macrocarpon HOM05D004578 ORTHO05D005529 1.9e-104 383.6 406 48.3
Ciclev10008459m.g Citrus clementina HOM05D004578 ORTHO05D005529 4.3e-104 382.5 415 48.7
Gohir.A06G104800 Gossypium hirsutum HOM05D004578 ORTHO05D005529 4.3e-104 382.5 409 49.4
BcaB06g27986 Brassica carinata HOM05D004578 ORTHO05D005529 7.3e-104 381.7 405 47.7
Gorai.010G121600 Gossypium raimondii HOM05D004578 ORTHO05D005529 1.3e-103 380.9 410 49.3
AL4G15160 Arabidopsis lyrata HOM05D004578 ORTHO05D005529 1.6e-103 380.6 407 47.9
BolC4t26970H Brassica oleracea HOM05D004578 ORTHO05D005529 1.6e-103 380.6 405 47.9
A04p18950 Brassica napus HOM05D004578 ORTHO05D005529 2.1e-103 380.2 405 47.9
Sabra06G0211200 Salix brachista HOM05D004578 ORTHO05D005529 2.1e-103 380.2 409 47.9
BcaC02g08438 Brassica carinata HOM05D004578 ORTHO05D005529 3.6e-103 379.4 405 47.9
C04p54190 Brassica napus HOM05D004578 ORTHO05D005529 3.6e-103 379.4 405 47.9
BraA04t17495Z Brassica rapa HOM05D004578 ORTHO05D005529 3.6e-103 379.4 405 47.7
Thhalv10000150m.g Eutrema salsugineum HOM05D004578 ORTHO05D005529 3.6e-103 379.4 406 47.5
Gohir.D06G107000 Gossypium hirsutum HOM05D004578 ORTHO05D005529 3.6e-103 379.4 410 49.0
DCAR_000687 Daucus carota HOM05D004578 ORTHO05D005529 4.8e-103 379.0 417 47.5
AT2G24580 Arabidopsis thaliana HOM05D004578 ORTHO05D005529 6.2e-103 378.6 408 47.8
CiPaw.07G211300 Carya illinoinensis HOM05D004578 ORTHO05D005529 6.2e-103 378.6 422 47.2
TAR383G1032 Trochodendron aralioides HOM05D004578 ORTHO05D005529 8.1e-103 378.3 395 49.4
Thecc.09G008600 Theobroma cacao HOM05D004578 ORTHO05D005529 1.1e-102 377.9 410 47.8
TAR383G0560 Trochodendron aralioides HOM05D004578 ORTHO05D005529 1.1e-102 377.9 395 49.4
Atru.chr7.2661 Acer truncatum HOM05D004578 ORTHO05D005529 1.4e-102 377.5 413 48.2
Cfa013287 Carpinus fangiana HOM05D004578 ORTHO05D005529 1.8e-102 377.1 404 47.8
Aa31sc160G30 Aethionema arabicum HOM05D004578 ORTHO05D005529 3.1e-102 376.3 405 47.4
Manes.03G004800 Manihot esculenta HOM05D004578 ORTHO05D005529 3.1e-102 376.3 406 45.8
Dinv04517 Davidia involucrata HOM05D004578 ORTHO05D005529 4.0e-102 375.9 413 47.5
MD08G1126500 Malus domestica HOM05D004578 ORTHO05D005529 4.0e-102 375.9 405 48.4
EL10Ac2g02417 Beta vulgaris HOM05D004578 ORTHO05D005529 5.3e-102 375.6 421 47.0
CSS0030954 Camellia sinensis var. sinensis HOM05D004578 ORTHO05D005529 5.3e-102 375.6 411 46.5
TWI32G0020 Tripterygium wilfordii HOM05D004578 ORTHO05D005529 5.3e-102 375.6 424 46.2
Carub.0004s0400 Capsella rubella HOM05D004578 ORTHO05D005529 6.9e-102 375.2 406 47.0
Prupe.1G458600 Prunus persica HOM05D004578 ORTHO05D005529 9.0e-102 374.8 405 48.6
Aa31sc715G30 Aethionema arabicum HOM05D004578 ORTHO05D005529 1.2e-101 374.4 411 46.5
ClCG05G026450 Citrullus lanatus HOM05D004578 ORTHO05D005529 1.2e-101 374.4 410 47.3
Potri.018G008700 Populus trichocarpa HOM05D004578 ORTHO05D005529 1.2e-101 374.4 408 48.3
Solyc08g006430.4 Solanum lycopersicum HOM05D004578 ORTHO05D005529 1.2e-101 374.4 414 45.4
Aqoxy7G02848 Aquilegia oxysepala HOM05D004578 ORTHO05D005529 1.5e-101 374.0 410 47.6
FAN15G2443 Fragaria x ananassa HOM05D004578 ORTHO05D005529 1.5e-101 374.0 403 47.1
AUR62020290 Chenopodium quinoa HOM05D004578 ORTHO05D005529 2.0e-101 373.6 403 48.6
FAN20G1103 Fragaria x ananassa HOM05D004578 ORTHO05D005529 2.0e-101 373.6 411 46.5
MD15G1106400 Malus domestica HOM05D004578 ORTHO05D005529 2.0e-101 373.6 403 48.4
PGR044G1507 Punica granatum HOM05D004578 ORTHO05D005529 2.0e-101 373.6 411 47.7
MELO3C003620.2 Cucumis melo HOM05D004578 ORTHO05D005529 3.4e-101 372.9 410 46.6
Ciclev10008463m.g Citrus clementina HOM05D004578 ORTHO05D005529 5.8e-101 372.1 409 48.2
FvH4_2g36660 Fragaria vesca HOM05D004578 ORTHO05D005529 5.8e-101 372.1 411 46.2
Sopen08g002370 Solanum pennellii HOM05D004578 ORTHO05D005529 5.8e-101 372.1 404 45.5
AUR62037713 Chenopodium quinoa HOM05D004578 ORTHO05D005529 9.9e-101 371.3 403 48.1
FAN27G0985 Fragaria x ananassa HOM05D004578 ORTHO05D005529 1.3e-100 370.9 403 46.9
Prupe.1G458900 Prunus persica HOM05D004578 ORTHO05D005529 1.3e-100 370.9 410 48.0
Manes.16G134500 Manihot esculenta HOM05D004578 ORTHO05D005529 1.7e-100 370.5 408 47.3
Eucgr.C04014 Eucalyptus grandis HOM05D004578 ORTHO05D005529 2.2e-100 370.2 395 47.3
MSTRG.25795 Avicennia marina HOM05D004578 ORTHO05D005529 2.9e-100 369.8 412 47.8
Migut.A00428 Erythranthe guttata HOM05D004578 ORTHO05D005529 6.4e-100 368.6 410 47.3
Potri.006G272800 Populus trichocarpa HOM05D004578 ORTHO05D005529 6.4e-100 368.6 409 46.2
Nitab4.5_0000555g0200 Nicotiana tabacum HOM05D004578 ORTHO05D005529 1.4e-99 367.5 414 45.4
QL12p025440 Quercus lobata HOM05D004578 ORTHO05D005529 1.4e-99 367.5 411 47.2
CsaV3_3G047160 Cucumis sativus L. HOM05D004578 ORTHO05D005529 2.4e-99 366.7 410 45.9
HanXRQChr15g0466441 Helianthus annuus HOM05D004578 ORTHO05D005529 2.4e-99 366.7 422 45.7
Sabra18G0013200 Salix brachista HOM05D004578 ORTHO05D005529 3.2e-99 366.3 408 46.6
Sabra18G0015700 Salix brachista HOM05D004578 ORTHO05D005529 3.2e-99 366.3 408 46.6
Cpa.g.sc23.31 Carica papaya HOM05D004578 ORTHO05D005529 7.1e-99 365.2 408 46.3
CAN.G673.19 Capsicum annuum HOM05D004578 ORTHO05D005529 9.3e-99 364.8 412 46.4
Cc00_g13120 Coffea canephora HOM05D004578 ORTHO05D005529 1.2e-98 364.4 411 45.5
Peaxi162Scf00045g01734 Petunia axillaris HOM05D004578 ORTHO05D005529 2.1e-98 363.6 403 45.4
Cfa013284 Carpinus fangiana HOM05D004578 ORTHO05D005529 4.6e-98 362.5 404 46.0
Lj1g0024454 Lotus japonicus HOM05D004578 ORTHO05D005529 4.6e-98 362.5 395 45.6
Actinidia06432 Actinidia chinensis HOM05D004578 ORTHO05D005529 6.0e-98 362.1 419 46.1
THA.LOC104819936 Tarenaya hassleriana HOM05D004578 ORTHO05D005529 6.0e-98 362.1 406 46.1
Eucgr.C04016 Eucalyptus grandis HOM05D004578 ORTHO05D005529 7.8e-98 361.7 395 46.3
Lsat_1_v5_gn_9_4341 Lactuca sativa HOM05D004578 ORTHO05D005529 7.8e-98 361.7 424 45.5
Hund13109 Selenicereus undatus HOM05D004578 ORTHO05D005529 7.8e-98 361.7 412 47.1
Ah.13g067790 Amaranthus hybridus HOM05D004578 ORTHO05D005529 3.0e-97 359.8 406 46.6
Lj7P748T39 Lonicera japonica HOM05D004578 ORTHO05D005529 3.9e-97 359.4 401 47.1
Rhsim10G0084800 Rhododendron simsii HOM05D004578 ORTHO05D005529 3.9e-97 359.4 395 45.6
Sed0023873 Sechium edule HOM05D004578 ORTHO05D005529 5.1e-97 359.0 415 47.5
SGA_v2.0_scaffold193G40672 Striga asiatica HOM05D004578 ORTHO05D005529 1.5e-96 357.5 410 46.1
TPR.G12360 Trifolium pratense HOM05D004578 ORTHO05D005529 1.5e-96 357.5 397 43.6
arahy.Tifrunner.gnm1.ann1.M0AD1K Arachis hypogaea HOM05D004578 ORTHO05D005529 5.6e-96 355.5 397 44.6
CDE02G4459 Ceratophyllum demersum HOM05D004578 ORTHO05D005529 5.6e-96 355.5 393 45.0
arahy.Tifrunner.gnm1.ann1.W2ETIH Arachis hypogaea HOM05D004578 ORTHO05D005529 7.3e-96 355.1 397 44.8
CiPaw.08G020700 Carya illinoinensis HOM05D004578 ORTHO05D005529 7.3e-96 355.1 403 47.1
Sc07g0007360 Simmondsia chinensis HOM05D004578 ORTHO05D005529 9.6e-96 354.8 404 45.3
ECA247G3559 Erigeron canadensis HOM05D004578 ORTHO05D005529 1.3e-95 354.4 423 46.6
QL12p025516 Quercus lobata HOM05D004578 ORTHO05D005529 1.3e-95 354.4 405 46.2
PGSC0003DMG400026320 Solanum tuberosum HOM05D004578 ORTHO05D005529 1.6e-95 354.0 403 44.4
SalBow4G0906 Salvia bowleyana HOM05D004578 ORTHO05D005529 1.1e-94 351.3 405 45.2
ATR0626G173 Amborella trichopoda HOM05D004578 ORTHO05D005529 1.4e-94 350.9 414 43.7
VMungo1309G1783 Vigna mungo HOM05D004578 ORTHO05D005529 1.4e-94 350.9 396 44.4
Nitab4.5_0004131g0050 Nicotiana tabacum HOM05D004578 ORTHO05D005529 2.4e-94 350.1 394 45.4
BcaC02g08437 Brassica carinata HOM05D004578 ORTHO05D005529 4.0e-94 349.4 404 45.8
Ca_15651_v3 Cicer arietinum L. HOM05D004578 ORTHO05D005529 4.0e-94 349.4 395 44.3
Ca_15659_v3 Cicer arietinum L. HOM05D004578 ORTHO05D005529 4.0e-94 349.4 395 44.3
Medtr3g109010 Medicago truncatula HOM05D004578 ORTHO05D005529 5.3e-94 349.0 402 43.3
Cfa013283 Carpinus fangiana HOM05D004578 ORTHO05D005529 6.9e-94 348.6 394 45.4
unitig_32.g11237 Utricularia gibba HOM05D004578 ORTHO05D005529 1.5e-93 347.4 404 45.0
MBI13_g34048_MAGBIO Magnolia biondii HOM05D004578 ORTHO05D005529 2.6e-93 346.7 400 45.0
Medtr3g108990 Medicago truncatula HOM05D004578 ORTHO05D005529 3.4e-93 346.3 395 44.1
HanXRQChr10g0282951 Helianthus annuus HOM05D004578 ORTHO05D005529 4.9e-92 342.4 415 43.6
Phvul.009G102000 Phaseolus vulgaris HOM05D004578 ORTHO05D005529 9.3e-91 338.2 397 43.8
Glyma.04G076300 Glycine max HOM05D004578 ORTHO05D005529 1.3e-89 334.3 398 42.2
RcHm_v2.0_Chr6g0305131 Rosa chinensis HOM05D004578 ORTHO05D005529 6.7e-89 332.0 409 43.5
Zm00001eb317190 Zea mays HOM05D004578 ORTHO05D005529 3.3e-88 329.7 411 43.8
Ca_15652_v3 Cicer arietinum L. HOM05D004578 ORTHO05D005529 4.3e-88 329.3 387 42.9
Ca_15660_v3 Cicer arietinum L. HOM05D004578 ORTHO05D005529 4.3e-88 329.3 387 42.9
Os09g0498500 Oryza sativa ssp. japonica HOM05D004578 ORTHO05D005529 5.6e-88 328.9 418 43.8
Psat5g024080 Pisum sativum HOM05D004578 ORTHO05D005529 9.6e-88 328.2 395 40.5
Actinidia22261 Actinidia chinensis HOM05D004578 ORTHO05D005529 8.1e-87 325.1 418 43.8
TPR.G12429 Trifolium pratense HOM05D004578 ORTHO05D005529 5.3e-86 322.4 398 41.5
Zm00001eb127180 Zea mays HOM05D004578 ORTHO05D005529 2.6e-85 320.1 407 44.2
Lalb_Chr11g0064181 Lupinus albus HOM05D004578 ORTHO05D005529 8.7e-81 305.1 394 39.6
Os01g0316100 Oryza sativa ssp. japonica HOM05D004578 ORTHO05D005529 1.1e-80 304.7 407 42.3
Os12g0543600 Oryza sativa ssp. japonica HOM05D004578 ORTHO05D005529 4.3e-80 302.8 394 42.4
Prupe.1G458800 Prunus persica HOM05D004578 ORTHO05D005529 7.4e-80 302.0 408 42.6
Zm00001eb340420 Zea mays HOM05D004578 ORTHO05D005529 4.5e-77 292.7 415 40.5
Zm00001eb140430 Zea mays HOM05D004578 ORTHO05D005529 1.3e-76 291.2 411 41.6
PRCOL_00000645 Prasinoderma coloniale HOM05D004578 ORTHO05D005529 6.7e-65 252.3 454 35.2
HPP92_017393 Vanilla planifolia HOM05D004578 ORTHO05D005529 5.9e-61 239.2 403 35.7
Psat5g025320 Pisum sativum HOM05D004578 ORTHO05D005529 1.1e-54 218.4 252 44.0
Gorai.010G121400 Gossypium raimondii HOM05D004578 ORTHO05D005529 2.9e-52 210.3 306 38.6
Gohir.D06G106866 Gossypium hirsutum HOM05D004578 ORTHO05D005529 1.1e-51 208.4 362 35.4
Oeu008773.1 Olea europaea HOM05D004578 ORTHO05D005529 1.3e-47 194.9 403 34.0
unitig_32.g11239 Utricularia gibba HOM05D004578 ORTHO05D005529 2.4e-46 190.7 192 47.4
Oeu018556.1 Olea europaea HOM05D004578 ORTHO05D005529 2.6e-45 187.2 416 32.0
Hma1.2p1_1588F.1_g292320 Hydrangea macrophylla HOM05D004578 ORTHO05D005529 6.5e-44 182.6 402 32.8
GSVIVG01033177001 Vitis vinifera HOM05D004578 ORTHO05D005529 1.1e-43 181.8 413 32.2
Ca_28680_v3 Cicer arietinum L. HOM05D004578 ORTHO05D005529 1.8e-33 147.9 377 29.4
Lalb_Chr23g0269171 Lupinus albus HOM05D004578 ORTHO05D005529 1.5e-32 144.8 170 41.8
Cfa013285 Carpinus fangiana HOM05D004578 ORTHO05D005529 4.4e-32 143.3 209 39.7
unitig_32.g11238 Utricularia gibba HOM05D004578 ORTHO05D005529 3.5e-29 133.7 102 62.7
Cre12.g493500 Chlamydomonas reinhardtii HOM05D004578 ORTHO05D005529 1.0e-25 122.1 426 27.0
HanXRQChr10g0282961 Helianthus annuus HOM05D004578 ORTHO05D005529 2.0e-24 117.9 161 42.9
TPR.G12332 Trifolium pratense HOM05D004578 ORTHO05D005529 2.7e-21 107.5 77 62.3
Cc08_g06580 Coffea canephora HOM05D004578 ORTHO05D005529 2.1e-18 97.8 125 42.4
Actinidia22262 Actinidia chinensis HOM05D004578 ORTHO05D005529 1.1e-06 58.9 330 23.3
Manes.12G059400 Manihot esculenta HOM05D006204 ORTHO05D007851 4.1e-06 57.0 250 25.6
Gorai.007G160200 Gossypium raimondii HOM05D006204 ORTHO05D007851 5.4e-06 56.6 233 25.8
Gohir.D11G149400 Gossypium hirsutum HOM05D006204 ORTHO05D007851 7.1e-06 56.2 233 25.8
VMungo1041G0001 Vigna mungo HOM05D004578 ORTHO05D005529 9.2e-06 55.8 42 69.0


User provided reference genes

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