Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c9_3480 Physcomitrium patens HOM05D000681 ORTHO05D050339 5.0e-45 184.1 95 100.0
Pp3c19_17230 Physcomitrium patens HOM05D000681 ORTHO05D005458 4.8e-24 114.4 69 85.5
Pp3c21_9610 Physcomitrium patens HOM05D000681 ORTHO05D005458 5.0e-21 104.4 69 78.3
Mapoly0003s0123 Marchantia polymorpha HOM05D000681 ORTHO05D005458 2.5e-20 102.1 69 72.5
Pp3c2_22140 Physcomitrium patens HOM05D000681 ORTHO05D005458 5.5e-20 100.9 75 68.0
AagrBONN_evm.TU.Sc2ySwM_228.474 Anthoceros agrestis HOM05D000681 ORTHO05D005458 7.2e-20 100.5 69 72.5
AagrBONN_evm.TU.Sc2ySwM_228.4630 Anthoceros agrestis HOM05D000681 ORTHO05D005458 2.1e-19 99.0 69 69.6
CANSAT01G0682 Cannabis sativa HOM05D000681 ORTHO05D005458 3.6e-19 98.2 69 68.1
Aqoxy5G01993 Aquilegia oxysepala HOM05D000681 ORTHO05D005458 6.1e-19 97.4 69 65.2
Lalb_Chr23g0272391 Lupinus albus HOM05D000681 ORTHO05D005458 6.1e-19 97.4 69 68.1
Dinv19483 Davidia involucrata HOM05D000681 ORTHO05D005458 8.0e-19 97.1 69 66.7
CiPaw.03G134000 Carya illinoinensis HOM05D000681 ORTHO05D005458 1.4e-18 96.3 69 68.1
Phvul.009G139100 Phaseolus vulgaris HOM05D000681 ORTHO05D005458 1.8e-18 95.9 69 66.7
SEGI_19176 Sequoiadendron giganteum HOM05D000681 ORTHO05D005458 1.8e-18 95.9 81 59.3
VMungo1309G3103 Vigna mungo HOM05D000681 ORTHO05D005458 1.8e-18 95.9 69 68.1
BolC9t59524H Brassica oleracea HOM05D000681 ORTHO05D005458 2.3e-18 95.5 69 66.7
Cfa002759 Carpinus fangiana HOM05D000681 ORTHO05D005458 2.3e-18 95.5 69 66.7
Haze_25051 Corylus avellana HOM05D000681 ORTHO05D005458 2.3e-18 95.5 69 66.7
Dinv42689 Davidia involucrata HOM05D000681 ORTHO05D005458 2.3e-18 95.5 69 65.2
Glyma.04G218900 Glycine max HOM05D000681 ORTHO05D005458 2.3e-18 95.5 69 66.7
Glyma.06G146900 Glycine max HOM05D000681 ORTHO05D005458 3.0e-18 95.1 69 66.7
SGA_v2.0_scaffold2G01293 Striga asiatica HOM05D000681 ORTHO05D005458 3.0e-18 95.1 69 66.7
Atru.chr4.340 Acer truncatum HOM05D000681 ORTHO05D005458 4.0e-18 94.7 69 65.2
A10p27550 Brassica napus HOM05D000681 ORTHO05D005458 4.0e-18 94.7 69 66.7
BraA10t44807Z Brassica rapa HOM05D000681 ORTHO05D005458 4.0e-18 94.7 69 66.7
MD15G1331800 Malus domestica HOM05D000681 ORTHO05D005458 4.0e-18 94.7 69 63.8
Actinidia12210 Actinidia chinensis HOM05D000681 ORTHO05D005458 5.2e-18 94.4 69 65.2
CSS0026429 Camellia sinensis var. sinensis HOM05D000681 ORTHO05D005458 5.2e-18 94.4 69 65.2
CSS0032659 Camellia sinensis var. sinensis HOM05D000681 ORTHO05D005458 5.2e-18 94.4 69 65.2
Lj4A865T29 Lonicera japonica HOM05D000681 ORTHO05D005458 5.2e-18 94.4 69 62.3
Potri.007G080600 Populus trichocarpa HOM05D000681 ORTHO05D005458 5.2e-18 94.4 69 66.7
Sabra07G0067700 Salix brachista HOM05D000681 ORTHO05D005458 5.2e-18 94.4 69 66.7
C09p67620 Brassica napus HOM05D000681 ORTHO05D005458 6.8e-18 94.0 69 66.7
HanXRQChr09g0259711 Helianthus annuus HOM05D000681 ORTHO05D005458 6.8e-18 94.0 69 63.8
QL06p031995 Quercus lobata HOM05D000681 ORTHO05D005458 6.8e-18 94.0 69 65.2
Sp6g33480 Schrenkiella parvula HOM05D000681 ORTHO05D005458 6.8e-18 94.0 69 68.1
arahy.Tifrunner.gnm1.ann1.TR14KI Arachis hypogaea HOM05D000681 ORTHO05D005458 8.8e-18 93.6 69 65.2
COL.COLO4_11005 Corchorus olitorius HOM05D000681 ORTHO05D005458 8.8e-18 93.6 71 64.8
MELO3C007483.2 Cucumis melo HOM05D000681 ORTHO05D005458 8.8e-18 93.6 69 63.8
CsaV3_6G042400 Cucumis sativus L. HOM05D000681 ORTHO05D005458 8.8e-18 93.6 69 63.8
ECA232G3656 Erigeron canadensis HOM05D000681 ORTHO05D005458 8.8e-18 93.6 69 63.8
FvH4_1g22620 Fragaria vesca HOM05D000681 ORTHO05D005458 8.8e-18 93.6 69 63.8
FAN19G1795 Fragaria x ananassa HOM05D000681 ORTHO05D005458 8.8e-18 93.6 69 63.8
FAN23G0462 Fragaria x ananassa HOM05D000681 ORTHO05D005458 8.8e-18 93.6 69 63.8
FAN26G1956 Fragaria x ananassa HOM05D000681 ORTHO05D005458 8.8e-18 93.6 69 63.8
HanXRQChr15g0493501 Helianthus annuus HOM05D000681 ORTHO05D005458 8.8e-18 93.6 69 63.8
Rhsim08G0006300 Rhododendron simsii HOM05D000681 ORTHO05D005458 8.8e-18 93.6 69 65.2
Rhsim08G0007000 Rhododendron simsii HOM05D000681 ORTHO05D005458 8.8e-18 93.6 69 65.2
RcHm_v2.0_Chr2g0116631 Rosa chinensis HOM05D000681 ORTHO05D005458 8.8e-18 93.6 69 63.8
HPP92_013373 Vanilla planifolia HOM05D000681 ORTHO05D005458 8.8e-18 93.6 69 66.7
Lj4g0003781 Lotus japonicus HOM05D000681 ORTHO05D005458 1.2e-17 93.2 69 66.7
Lsat_1_v5_gn_4_137440 Lactuca sativa HOM05D000681 ORTHO05D005458 1.5e-17 92.8 69 62.3
Manes.12G143100 Manihot esculenta HOM05D000681 ORTHO05D005458 1.5e-17 92.8 69 63.8
Oeu028523.2 Olea europaea HOM05D000681 ORTHO05D005458 1.5e-17 92.8 69 65.2
unitig_747.g21746 Utricularia gibba HOM05D000681 ORTHO05D005458 1.5e-17 92.8 69 63.8
AL6G20350 Arabidopsis lyrata HOM05D000681 ORTHO05D005458 2.0e-17 92.4 69 66.7
ClCG01G016130 Citrullus lanatus HOM05D000681 ORTHO05D005458 2.0e-17 92.4 69 63.8
Ciclev10025045m.g Citrus clementina HOM05D000681 ORTHO05D005458 2.0e-17 92.4 69 62.3
MBI02_g18929_MAGBIO Magnolia biondii HOM05D000681 ORTHO05D005458 2.0e-17 92.4 69 65.2
Prupe.6G171800 Prunus persica HOM05D000681 ORTHO05D005458 2.0e-17 92.4 69 63.8
Aa31LG3G17200 Aethionema arabicum HOM05D000681 ORTHO05D005458 2.6e-17 92.0 69 63.8
arahy.Tifrunner.gnm1.ann1.G3SQ12 Arachis hypogaea HOM05D000681 ORTHO05D005458 2.6e-17 92.0 69 63.8
CBR_g20265 Chara braunii HOM05D000681 ORTHO05D005458 2.6e-17 92.0 69 62.3
Ca_16896_v3 Cicer arietinum L. HOM05D000681 ORTHO05D005458 2.6e-17 92.0 69 63.8
Nn1g05175 Nelumbo nucifera HOM05D000681 ORTHO05D005458 2.6e-17 92.0 69 63.8
Sed0012802 Sechium edule HOM05D000681 ORTHO05D005458 2.6e-17 92.0 69 62.3
Carub.0006s0837 Capsella rubella HOM05D000681 ORTHO05D005458 3.4e-17 91.7 69 66.7
CAN.G347.2 Capsicum annuum HOM05D000681 ORTHO05D005458 3.4e-17 91.7 69 60.9
CDE08G1085 Ceratophyllum demersum HOM05D000681 ORTHO05D005458 3.4e-17 91.7 69 65.2
Duzib147G1662 Durio zibethinus HOM05D000681 ORTHO05D005458 3.4e-17 91.7 69 66.7
THA.LOC104799282 Tarenaya hassleriana HOM05D000681 ORTHO05D005458 3.4e-17 91.7 69 63.8
TPR.G23769 Trifolium pratense HOM05D000681 ORTHO05D005458 3.4e-17 91.7 69 63.8
GSVIVG01022235001 Vitis vinifera HOM05D000681 ORTHO05D005458 3.4e-17 91.7 69 63.8
Migut.H02441 Erythranthe guttata HOM05D000681 ORTHO05D005458 4.4e-17 91.3 69 65.2
Thhalv10012861m.g Eutrema salsugineum HOM05D000681 ORTHO05D005458 4.4e-17 91.3 69 65.2
Gohir.A02G135600 Gossypium hirsutum HOM05D000681 ORTHO05D005458 4.4e-17 91.3 69 65.2
Gorai.003G047600 Gossypium raimondii HOM05D000681 ORTHO05D005458 4.4e-17 91.3 69 65.2
Hma1.2p1_0375F.1_g138760 Hydrangea macrophylla HOM05D000681 ORTHO05D005458 4.4e-17 91.3 69 62.3
Nn5g28891 Nelumbo nucifera HOM05D000681 ORTHO05D005458 4.4e-17 91.3 69 62.3
Potri.005G084800 Populus trichocarpa HOM05D000681 ORTHO05D005458 4.4e-17 91.3 69 63.8
Sp2g27920 Schrenkiella parvula HOM05D000681 ORTHO05D005458 4.4e-17 91.3 69 62.3
TWI77G0095 Tripterygium wilfordii HOM05D000681 ORTHO05D005458 4.4e-17 91.3 69 62.3
vmacro18636 Vaccinium macrocarpon HOM05D000681 ORTHO05D005458 4.4e-17 91.3 69 62.3
BcaB08g37171 Brassica carinata HOM05D000681 ORTHO05D005458 5.7e-17 90.9 69 65.2
DCAR_001373 Daucus carota HOM05D000681 ORTHO05D005458 5.7e-17 90.9 69 60.9
Duzib264G0717 Durio zibethinus HOM05D000681 ORTHO05D005458 5.7e-17 90.9 69 66.7
Gohir.A11G198000 Gossypium hirsutum HOM05D000681 ORTHO05D005458 5.7e-17 90.9 69 65.2
Medtr3g095010 Medicago truncatula HOM05D000681 ORTHO05D005458 5.7e-17 90.9 69 62.3
PSO170G5235 Papaver somniferum HOM05D000681 ORTHO05D005458 5.7e-17 90.9 69 60.9
PSO210G1708 Papaver somniferum HOM05D000681 ORTHO05D005458 5.7e-17 90.9 69 60.9
Thecc.01G113800 Theobroma cacao HOM05D000681 ORTHO05D005458 5.7e-17 90.9 69 66.7
MSTRG.2527 Avicennia marina HOM05D000681 ORTHO05D005458 9.8e-17 90.1 69 59.4
Solyc04g051800.3 Solanum lycopersicum HOM05D000681 ORTHO05D005458 9.8e-17 90.1 69 59.4
Sopen04g023150 Solanum pennellii HOM05D000681 ORTHO05D005458 9.8e-17 90.1 69 59.4
PGSC0003DMG400016576 Solanum tuberosum HOM05D000681 ORTHO05D005458 9.8e-17 90.1 69 59.4
AL8G42320 Arabidopsis lyrata HOM05D000681 ORTHO05D005458 1.3e-16 89.7 69 60.9
BcaB07g29761 Brassica carinata HOM05D000681 ORTHO05D005458 1.3e-16 89.7 69 60.9
A02p43520 Brassica napus HOM05D000681 ORTHO05D005458 1.3e-16 89.7 69 60.9
C02p63610 Brassica napus HOM05D000681 ORTHO05D005458 1.3e-16 89.7 69 60.9
BraA02t09280Z Brassica rapa HOM05D000681 ORTHO05D005458 1.3e-16 89.7 69 60.9
Carub.0008s2567 Capsella rubella HOM05D000681 ORTHO05D005458 1.3e-16 89.7 69 60.9
CARHR278850 Cardamine hirsuta HOM05D000681 ORTHO05D005458 1.3e-16 89.7 69 60.9
Gohir.D03G046533 Gossypium hirsutum HOM05D000681 ORTHO05D005458 1.3e-16 89.7 69 63.8
Peaxi162Scf00106g02319 Petunia axillaris HOM05D000681 ORTHO05D005458 1.3e-16 89.7 69 59.4
SalBow5G4766 Salvia bowleyana HOM05D000681 ORTHO05D005458 1.3e-16 89.7 69 59.4
Gohir.D11G233700 Gossypium hirsutum HOM05D000681 ORTHO05D005458 1.7e-16 89.4 69 63.8
Gorai.007G244600 Gossypium raimondii HOM05D000681 ORTHO05D005458 1.7e-16 89.4 69 63.8
Sc09g0002800 Simmondsia chinensis HOM05D000681 ORTHO05D005458 1.7e-16 89.4 69 63.8
ATR0564G351 Amborella trichopoda HOM05D000681 ORTHO05D005458 2.2e-16 89.0 69 60.9
Psat5g065080 Pisum sativum HOM05D000681 ORTHO05D005458 2.2e-16 89.0 69 60.9
THA.LOC104818476 Tarenaya hassleriana HOM05D000681 ORTHO05D005458 2.2e-16 89.0 69 60.9
Aa31LG1G17090 Aethionema arabicum HOM05D000681 ORTHO05D005458 2.8e-16 88.6 69 60.9
AT5G64840 Arabidopsis thaliana HOM05D000681 ORTHO05D005458 2.8e-16 88.6 69 59.4
BcaC03g18282 Brassica carinata HOM05D000681 ORTHO05D005458 2.8e-16 88.6 69 59.4
BolC2t12427H Brassica oleracea HOM05D000681 ORTHO05D005458 2.8e-16 88.6 69 59.4
Lj1g0006962 Lotus japonicus HOM05D000681 ORTHO05D005458 2.8e-16 88.6 69 62.3
AT5G09930 Arabidopsis thaliana HOM05D000681 ORTHO05D005458 3.7e-16 88.2 69 65.2
Cc07_g16310 Coffea canephora HOM05D000681 ORTHO05D005458 3.7e-16 88.2 69 59.4
Thhalv10003741m.g Eutrema salsugineum HOM05D000681 ORTHO05D005458 4.8e-16 87.8 69 60.9
SGA_v2.0_scaffold51G18759 Striga asiatica HOM05D000681 ORTHO05D005458 4.8e-16 87.8 69 63.8
AUR62000701 Chenopodium quinoa HOM05D000681 ORTHO05D005458 6.3e-16 87.4 69 58.0
AUR62005252 Chenopodium quinoa HOM05D000681 ORTHO05D005458 6.3e-16 87.4 69 58.0
Nitab4.5_0004840g0050 Nicotiana tabacum HOM05D000681 ORTHO05D005458 6.3e-16 87.4 69 58.0
Nitab4.5_0006520g0010 Nicotiana tabacum HOM05D000681 ORTHO05D005458 6.3e-16 87.4 69 58.0
SalBow6G0295 Salvia bowleyana HOM05D000681 ORTHO05D005458 1.1e-15 86.7 69 59.4
Os11g0603200 Oryza sativa ssp. japonica HOM05D000681 ORTHO05D005458 1.4e-15 86.3 69 60.9
Eucgr.I00319 Eucalyptus grandis HOM05D000681 ORTHO05D005458 2.4e-15 85.5 69 60.9
RcHm_v2.0_Chr2g0116711 Rosa chinensis HOM05D000681 ORTHO05D050339 3.1e-15 85.1 68 60.3
EL10Ac4g09838 Beta vulgaris HOM05D000681 ORTHO05D005458 4.1e-15 84.7 69 56.5
Ah.06g189110 Amaranthus hybridus HOM05D000681 ORTHO05D005458 7.0e-15 84.0 69 55.1
TAR381G0346 Trochodendron aralioides HOM05D000681 ORTHO05D005458 7.0e-15 84.0 69 58.0
Zm00001eb115000 Zea mays HOM05D000681 ORTHO05D005458 2.0e-14 82.4 69 59.4
MD01G1020500 Malus domestica HOM05D000681 ORTHO05D005458 2.7e-14 82.0 62 59.7
PGR004G1701 Punica granatum HOM05D000681 ORTHO05D005458 2.3e-13 79.0 69 59.4
Hund21729 Selenicereus undatus HOM05D000681 ORTHO05D005458 2.9e-13 78.6 69 55.1
RcHm_v2.0_Chr2g0116661 Rosa chinensis HOM05D000681 ORTHO05D005458 3.8e-13 78.2 57 59.6
FAN28G0951 Fragaria x ananassa HOM05D000681 ORTHO05D005458 1.1e-12 76.6 53 64.2
CDE02G2865 Ceratophyllum demersum HOM05D000681 ORTHO05D005458 1.5e-12 76.3 77 53.2
TAR625G1550 Trochodendron aralioides HOM05D000681 ORTHO05D005458 9.5e-12 73.6 69 50.7
Cre08.g372250 Chlamydomonas reinhardtii HOM05D000681 ORTHO05D005458 1.4e-10 69.7 69 52.2
SMO358G0544 Selaginella moellendorffii HOM05D000681 ORTHO05D005458 1.4e-10 69.7 69 52.2
HPP92_013366 Vanilla planifolia HOM05D000681 ORTHO05D005458 1.2e-09 66.6 69 52.2
PRCOL_00003140 Prasinoderma coloniale HOM05D000681 ORTHO05D005458 2.6e-09 65.5 69 49.3
MCO11G006 Micromonas commoda HOM05D000681 ORTHO05D005458 1.2e-06 56.6 69 43.5


User provided reference genes

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