Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c9_2880 Physcomitrium patens HOM05D003727 ORTHO05D004731 1.0e-218 763.1 373 100.0
Pp3c15_8270 Physcomitrium patens HOM05D003727 ORTHO05D004731 4.7e-200 701.0 373 92.2
Mapoly0183s0013 Marchantia polymorpha HOM05D003727 ORTHO05D004731 6.9e-183 644.0 369 84.6
AagrBONN_evm.TU.Sc2ySwM_362.1196 Anthoceros agrestis HOM05D003727 ORTHO05D004731 1.3e-176 623.2 368 81.8
SMO115G0066 Selaginella moellendorffii HOM05D003727 ORTHO05D004731 9.3e-172 607.1 368 78.5
SEGI_06820 Sequoiadendron giganteum HOM05D003727 ORTHO05D004731 1.9e-164 582.8 372 75.5
CBR_g238 Chara braunii HOM05D003727 ORTHO05D004731 4.8e-160 568.2 375 73.6
Hma1.2p1_2234F.1_g317700 Hydrangea macrophylla HOM05D003727 ORTHO05D004731 3.2e-148 528.9 372 66.9
ATR0796G219 Amborella trichopoda HOM05D003727 ORTHO05D004731 5.5e-148 528.1 369 67.2
PSO357G0471 Papaver somniferum HOM05D003727 ORTHO05D004731 5.5e-148 528.1 372 66.7
Solyc01g057210.3 Solanum lycopersicum HOM05D003727 ORTHO05D004731 9.4e-148 527.3 372 66.7
Migut.N00003 Erythranthe guttata HOM05D003727 ORTHO05D004731 1.2e-147 526.9 364 67.6
PSO170G4280 Papaver somniferum HOM05D003727 ORTHO05D004731 3.6e-147 525.4 372 66.7
arahy.Tifrunner.gnm1.ann1.EP383Y Arachis hypogaea HOM05D003727 ORTHO05D004731 4.7e-147 525.0 372 66.7
Sopen01g021750 Solanum pennellii HOM05D003727 ORTHO05D004731 4.7e-147 525.0 372 66.4
CsaV3_4G025780 Cucumis sativus L. HOM05D003727 ORTHO05D004731 7.9e-147 524.2 373 67.3
Sp3g05430 Schrenkiella parvula HOM05D003727 ORTHO05D004731 7.9e-147 524.2 372 66.7
THA.LOC104818862 Tarenaya hassleriana HOM05D003727 ORTHO05D004731 7.9e-147 524.2 372 66.4
CSS0027704 Camellia sinensis var. sinensis HOM05D003727 ORTHO05D004731 1.0e-146 523.9 368 67.4
Lalb_Chr23g0276061 Lupinus albus HOM05D003727 ORTHO05D004731 1.0e-146 523.9 369 66.4
PGSC0003DMG400013068 Solanum tuberosum HOM05D003727 ORTHO05D004731 1.0e-146 523.9 372 66.4
Glyma.09G079000 Glycine max HOM05D003727 ORTHO05D004731 1.4e-146 523.5 372 66.7
Duzib151G0200 Durio zibethinus HOM05D003727 ORTHO05D004731 1.8e-146 523.1 372 66.4
Thecc.04G312500 Theobroma cacao HOM05D003727 ORTHO05D004731 1.8e-146 523.1 372 66.7
Glyma.15G188500 Glycine max HOM05D003727 ORTHO05D004731 3.0e-146 522.3 372 66.7
Gohir.D01G023600 Gossypium hirsutum HOM05D003727 ORTHO05D004731 3.0e-146 522.3 372 66.7
ClCG04G007480 Citrullus lanatus HOM05D003727 ORTHO05D004731 3.9e-146 521.9 373 66.8
ClCG05G006850 Citrullus lanatus HOM05D003727 ORTHO05D004731 3.9e-146 521.9 373 66.8
Thhalv10020969m.g Eutrema salsugineum HOM05D003727 ORTHO05D004731 3.9e-146 521.9 372 66.4
Peaxi162Scf00126g01030 Petunia axillaris HOM05D003727 ORTHO05D004731 5.2e-146 521.5 371 65.5
Gohir.A01G036300 Gossypium hirsutum HOM05D003727 ORTHO05D004731 6.7e-146 521.2 372 66.4
Potri.010G002000 Populus trichocarpa HOM05D003727 ORTHO05D004731 8.8e-146 520.8 372 65.9
Prupe.1G105800 Prunus persica HOM05D003727 ORTHO05D004731 8.8e-146 520.8 369 65.9
Cc03_g00160 Coffea canephora HOM05D003727 ORTHO05D004731 1.5e-145 520.0 372 68.0
Lj6g0008986 Lotus japonicus HOM05D003727 ORTHO05D004731 1.5e-145 520.0 372 65.9
MSTRG.21742 Avicennia marina HOM05D003727 ORTHO05D004731 2.0e-145 519.6 369 65.6
C03p42180 Brassica napus HOM05D003727 ORTHO05D004731 2.6e-145 519.2 372 66.9
BraA03t12649Z Brassica rapa HOM05D003727 ORTHO05D004731 2.6e-145 519.2 372 66.9
Cfa015726 Carpinus fangiana HOM05D003727 ORTHO05D004731 2.6e-145 519.2 372 66.1
Cre05.g241750 Chlamydomonas reinhardtii HOM05D003727 ORTHO05D004731 2.6e-145 519.2 368 68.8
CsaV3_3G015500 Cucumis sativus L. HOM05D003727 ORTHO05D004731 2.6e-145 519.2 373 66.8
Oeu022704.1 Olea europaea HOM05D003727 ORTHO05D004731 2.6e-145 519.2 367 67.0
Aa31LG5G17020 Aethionema arabicum HOM05D003727 ORTHO05D004731 3.3e-145 518.8 372 66.4
Gorai.002G032100 Gossypium raimondii HOM05D003727 ORTHO05D004731 3.3e-145 518.8 372 66.4
HanXRQChr07g0194351 Helianthus annuus HOM05D003727 ORTHO05D004731 3.3e-145 518.8 373 65.7
THA.LOC104798546 Tarenaya hassleriana HOM05D003727 ORTHO05D004731 3.3e-145 518.8 372 65.1
THA.LOC104802717 Tarenaya hassleriana HOM05D003727 ORTHO05D004731 3.3e-145 518.8 372 65.1
QL06p014168 Quercus lobata HOM05D003727 ORTHO05D004731 5.7e-145 518.1 374 66.0
BolC3t16499H Brassica oleracea HOM05D003727 ORTHO05D004731 9.7e-145 517.3 372 66.7
Cpa.g.sc146.27 Carica papaya HOM05D003727 ORTHO05D004731 9.7e-145 517.3 370 65.4
VMungo1309G1883 Vigna mungo HOM05D003727 ORTHO05D004731 9.7e-145 517.3 369 66.1
Hund12253 Selenicereus undatus HOM05D003727 ORTHO05D004731 1.3e-144 516.9 371 66.8
GSVIVG01017684001 Vitis vinifera HOM05D003727 ORTHO05D004731 1.3e-144 516.9 372 64.8
Haze_00772 Corylus avellana HOM05D003727 ORTHO05D004731 1.7e-144 516.5 379 66.2
MBI18_g09643_MAGBIO Magnolia biondii HOM05D003727 ORTHO05D004731 3.7e-144 515.4 373 66.2
Ciclev10005215m.g Citrus clementina HOM05D003727 ORTHO05D004731 6.3e-144 514.6 368 64.9
Carub.0003s0594 Capsella rubella HOM05D003727 ORTHO05D004731 8.2e-144 514.2 372 66.7
CAN.G179.19 Capsicum annuum HOM05D003727 ORTHO05D004731 8.2e-144 514.2 372 65.6
PGR004G0380 Punica granatum HOM05D003727 ORTHO05D004731 8.2e-144 514.2 386 64.5
Sed0005057 Sechium edule HOM05D003727 ORTHO05D004731 8.2e-144 514.2 373 65.4
CARHR081010 Cardamine hirsuta HOM05D003727 ORTHO05D004731 1.1e-143 513.8 372 66.7
Sabra10G0001600 Salix brachista HOM05D003727 ORTHO05D004731 1.1e-143 513.8 372 65.6
TPR.G15491 Trifolium pratense HOM05D003727 ORTHO05D004731 1.1e-143 513.8 365 65.8
DCAR_023405 Daucus carota HOM05D003727 ORTHO05D004731 1.4e-143 513.5 370 65.4
Phvul.009G219900 Phaseolus vulgaris HOM05D003727 ORTHO05D004731 1.4e-143 513.5 369 66.1
unitig_699.g19980 Utricularia gibba HOM05D003727 ORTHO05D004731 1.4e-143 513.5 374 64.2
CiPaw.01G129700 Carya illinoinensis HOM05D003727 ORTHO05D004731 1.8e-143 513.1 372 65.9
AT3G06483 Arabidopsis thaliana HOM05D003727 ORTHO05D004731 2.4e-143 512.7 372 66.7
Ca_07250_v3 Cicer arietinum L. HOM05D003727 ORTHO05D004731 2.4e-143 512.7 368 66.3
Manes.03G211600 Manihot esculenta HOM05D003727 ORTHO05D004731 2.4e-143 512.7 372 65.6
Rhsim04G0248100 Rhododendron simsii HOM05D003727 ORTHO05D004731 2.4e-143 512.7 372 65.9
Gohir.A10G176400 Gossypium hirsutum HOM05D003727 ORTHO05D004731 4.1e-143 511.9 372 64.8
FvH4_4g21480 Fragaria vesca HOM05D003727 ORTHO05D004731 5.3e-143 511.5 372 65.9
FAN12G0484 Fragaria x ananassa HOM05D003727 ORTHO05D004731 5.3e-143 511.5 372 65.9
Lalb_Chr11g0073551 Lupinus albus HOM05D003727 ORTHO05D004731 5.3e-143 511.5 372 64.5
THA.LOC104827107 Tarenaya hassleriana HOM05D003727 ORTHO05D004731 5.3e-143 511.5 370 65.4
CDE02G0044 Ceratophyllum demersum HOM05D003727 ORTHO05D002799 7.0e-143 511.1 355 67.6
Ca_02357_v3 Cicer arietinum L. HOM05D003727 ORTHO05D004731 7.0e-143 511.1 373 65.4
Nitab4.5_0001334g0060 Nicotiana tabacum HOM05D003727 ORTHO05D004731 7.0e-143 511.1 383 64.0
RcHm_v2.0_Chr4g0427421 Rosa chinensis HOM05D003727 ORTHO05D004731 7.0e-143 511.1 372 65.6
TWI73G0221 Tripterygium wilfordii HOM05D003727 ORTHO05D004731 7.0e-143 511.1 372 65.9
HPP92_001184 Vanilla planifolia HOM05D003727 ORTHO05D004731 9.1e-143 510.8 366 66.9
Aqoxy7G02168 Aquilegia oxysepala HOM05D003727 ORTHO05D004731 1.2e-142 510.4 369 65.0
MD13G1140800 Malus domestica HOM05D003727 ORTHO05D004731 1.2e-142 510.4 368 64.9
Medtr7g024460 Medicago truncatula HOM05D003727 ORTHO05D004731 1.2e-142 510.4 366 65.3
TAR365G0780 Trochodendron aralioides HOM05D003727 ORTHO05D004731 1.2e-142 510.4 368 65.5
Gohir.D10G183100 Gossypium hirsutum HOM05D003727 ORTHO05D004731 1.6e-142 510.0 372 64.8
Sed0027316 Sechium edule HOM05D003727 ORTHO05D004731 2.0e-142 509.6 373 65.4
CSS0023101 Camellia sinensis var. sinensis HOM05D003727 ORTHO05D004731 3.5e-142 508.8 375 65.1
Gorai.011G205200 Gossypium raimondii HOM05D003727 ORTHO05D004731 3.5e-142 508.8 372 64.5
CANSAT78G0237 Cannabis sativa HOM05D003727 ORTHO05D004731 4.5e-142 508.4 369 66.7
TPR.G39591 Trifolium pratense HOM05D003727 ORTHO05D004731 4.5e-142 508.4 372 65.3
Zm00001eb328730 Zea mays HOM05D003727 ORTHO05D004731 4.5e-142 508.4 364 66.2
FAN17G0291 Fragaria x ananassa HOM05D003727 ORTHO05D004731 5.9e-142 508.1 372 65.6
Medtr2g045490 Medicago truncatula HOM05D003727 ORTHO05D004731 5.9e-142 508.1 372 64.8
Aqoxy5G02791 Aquilegia oxysepala HOM05D003727 ORTHO05D004731 1.3e-141 506.9 370 64.9
Nitab4.5_0003998g0020 Nicotiana tabacum HOM05D003727 ORTHO05D004731 2.9e-141 505.8 368 64.9
Nitab4.5_0004046g0020 Nicotiana tabacum HOM05D003727 ORTHO05D004731 3.8e-141 505.4 372 65.1
Lsat_1_v5_gn_6_70560 Lactuca sativa HOM05D003727 ORTHO05D004731 5.0e-141 505.0 372 65.1
A03p34710 Brassica napus HOM05D003727 ORTHO05D004731 1.1e-140 503.8 405 61.7
arahy.Tifrunner.gnm1.ann1.BN91E6 Arachis hypogaea HOM05D003727 ORTHO05D004731 1.5e-140 503.4 411 59.9
CAN.G484.91 Capsicum annuum HOM05D003727 ORTHO05D004731 1.5e-140 503.4 368 64.7
Sc25g0002190 Simmondsia chinensis HOM05D003727 ORTHO05D004731 1.5e-140 503.4 399 60.7
BcaC05g30021 Brassica carinata HOM05D003727 ORTHO05D004731 3.2e-140 502.3 360 66.1
Os07g0637300 Oryza sativa ssp. japonica HOM05D003727 ORTHO05D004731 3.2e-140 502.3 367 65.7
BcaC05g29821 Brassica carinata HOM05D003727 ORTHO05D004731 4.2e-140 501.9 360 65.8
A05p41540 Brassica napus HOM05D003727 ORTHO05D004731 4.2e-140 501.9 360 65.8
C05p60740 Brassica napus HOM05D003727 ORTHO05D004731 4.2e-140 501.9 360 65.8
BolC5t34734H Brassica oleracea HOM05D003727 ORTHO05D004731 4.2e-140 501.9 360 65.8
BraA05t22875Z Brassica rapa HOM05D003727 ORTHO05D004731 4.2e-140 501.9 360 65.8
Psat3g179960 Pisum sativum HOM05D003727 ORTHO05D004731 5.5e-140 501.5 366 64.8
Phvul.009G220000 Phaseolus vulgaris HOM05D003727 ORTHO05D004731 2.7e-139 499.2 359 65.5
EL10Ac3g06260 Beta vulgaris HOM05D003727 ORTHO05D004731 1.0e-138 497.3 372 64.0
HanXRQChr05g0149271 Helianthus annuus HOM05D003727 ORTHO05D004731 1.8e-138 496.5 370 63.5
GSVIVG01031319001 Vitis vinifera HOM05D003727 ORTHO05D004731 4.0e-138 495.4 369 64.0
Eucgr.H04122 Eucalyptus grandis HOM05D003727 ORTHO05D004731 5.2e-138 495.0 355 65.9
MCO15G342 Micromonas commoda HOM05D003727 ORTHO05D004731 1.5e-137 493.4 384 64.3
Solyc12g098930.3 Solanum lycopersicum HOM05D003727 ORTHO05D004731 5.7e-137 491.5 375 62.7
arahy.Tifrunner.gnm1.ann1.E3SS24 Arachis hypogaea HOM05D003727 ORTHO05D004731 7.5e-137 491.1 372 63.4
COL.COLO4_34520 Corchorus olitorius HOM05D003727 ORTHO05D004731 7.5e-137 491.1 363 64.7
PSO210G4254 Papaver somniferum HOM05D003727 ORTHO05D004731 9.7e-137 490.7 370 61.9
Peaxi162Scf00668g00119 Petunia axillaris HOM05D003727 ORTHO05D004731 9.7e-137 490.7 368 62.8
PSO761G0171 Papaver somniferum HOM05D003727 ORTHO05D004731 1.7e-136 490.0 370 61.6
Sopen12g033680 Solanum pennellii HOM05D003727 ORTHO05D004731 2.2e-136 489.6 375 62.4
Glyma.17G040500 Glycine max HOM05D003727 ORTHO05D004731 2.8e-136 489.2 362 65.2
Zm00001eb018000 Zea mays HOM05D003727 ORTHO05D004731 8.2e-136 487.6 364 63.7
Actinidia18506 Actinidia chinensis HOM05D003727 ORTHO05D004731 7.0e-135 484.6 351 65.5
Os03g0370000 Oryza sativa ssp. japonica HOM05D003727 ORTHO05D004731 9.1e-135 484.2 362 63.3
MBI19_g32733_MAGBIO Magnolia biondii HOM05D003727 ORTHO05D004731 5.9e-134 481.5 374 62.6
Atru.chr4.3143 Acer truncatum HOM05D003727 ORTHO05D004731 7.7e-134 481.1 362 63.8
Lj6A700T83 Lonicera japonica HOM05D003727 ORTHO05D004731 1.0e-133 480.7 372 62.6
SGA_v2.0_scaffold157G37383 Striga asiatica HOM05D003727 ORTHO05D004731 2.9e-133 479.2 434 55.8
Nn3g21906 Nelumbo nucifera HOM05D003727 ORTHO05D004731 5.0e-133 478.4 371 63.1
PGSC0003DMG400004685 Solanum tuberosum HOM05D003727 ORTHO05D004731 8.5e-133 477.6 375 61.3
ECA233G2414 Erigeron canadensis HOM05D003727 ORTHO05D004731 1.1e-132 477.2 372 61.6
Psat1g017520 Pisum sativum HOM05D003727 ORTHO05D004731 1.5e-132 476.9 353 64.6
SalBow8G0722 Salvia bowleyana HOM05D003727 ORTHO05D004731 5.5e-132 474.9 360 63.3
Actinidia00296 Actinidia chinensis HOM05D003727 ORTHO05D004731 2.1e-131 473.0 371 62.5
CiPaw.02G069500 Carya illinoinensis HOM05D003727 ORTHO05D004731 2.7e-131 472.6 349 64.8
SMO367G0119 Selaginella moellendorffii HOM05D003727 ORTHO05D004731 3.6e-131 472.2 367 63.2
VMungo1215G3329 Vigna mungo HOM05D003727 ORTHO05D004731 4.7e-131 471.9 363 64.5
CDE01G0062 Ceratophyllum demersum HOM05D003727 ORTHO05D004731 6.1e-131 471.5 360 62.5
Nitab4.5_0000895g0180 Nicotiana tabacum HOM05D003727 ORTHO05D004731 6.1e-131 471.5 350 63.7
Lj3A840G128 Lonicera japonica HOM05D003727 ORTHO05D004731 1.8e-130 469.9 368 62.8
SGA_v2.0_scaffold157G37388 Striga asiatica HOM05D003727 ORTHO05D004731 3.1e-127 459.1 374 59.6
vmacro08010 Vaccinium macrocarpon HOM05D003727 ORTHO05D004731 4.1e-127 458.8 367 61.3
AUR62002558 Chenopodium quinoa HOM05D003727 ORTHO05D004731 2.7e-126 456.1 353 62.9
PRCOL_00006564 Prasinoderma coloniale HOM05D003727 ORTHO05D004731 7.7e-126 454.5 406 57.9
SHI00051 Sapria himalayana HOM05D003727 ORTHO05D004731 5.5e-124 448.4 395 58.5
Cre06.g278451 Chlamydomonas reinhardtii HOM05D003727 ORTHO05D004731 3.6e-115 419.1 368 55.2
Lj4g0016505 Lotus japonicus HOM05D003727 ORTHO05D004731 4.0e-114 415.6 287 69.7
Oeu037626.1 Olea europaea HOM05D003727 ORTHO05D004731 6.4e-112 408.3 288 68.1
unitig_8.g2888 Utricularia gibba HOM05D003727 ORTHO05D004731 2.4e-111 406.4 358 55.6
Nn4g25394 Nelumbo nucifera HOM05D003727 ORTHO05D004731 2.3e-109 399.8 285 66.0
AL3G17510 Arabidopsis lyrata HOM05D003727 ORTHO05D004731 3.0e-109 399.4 279 70.3
ECA246G0694 Erigeron canadensis HOM05D003727 ORTHO05D004731 1.2e-107 394.0 328 58.2
TAR633G1110 Trochodendron aralioides HOM05D003727 ORTHO05D004731 8.9e-106 387.9 354 56.2
unitig_747.g21103 Utricularia gibba HOM05D003727 ORTHO05D004731 6.4e-104 381.7 332 56.6
MELO3C006749.2 Cucumis melo HOM05D003727 ORTHO05D004731 1.6e-102 377.1 279 63.1
MELO3C003205.2 Cucumis melo HOM05D003727 ORTHO05D004731 1.7e-101 373.6 280 62.5
Dinv29512 Davidia involucrata HOM05D003727 ORTHO05D004731 1.9e-100 370.2 278 61.2
SGA_v2.0_scaffold64G22028 Striga asiatica HOM05D003727 ORTHO05D004731 3.6e-99 365.9 279 62.4
Glyma.13G119800 Glycine max HOM05D003727 ORTHO05D004731 1.8e-98 363.6 276 65.9
arahy.Tifrunner.gnm1.ann1.L2TMJG Arachis hypogaea HOM05D003727 ORTHO05D004731 2.9e-96 356.3 290 58.3
Zm00001eb394190 Zea mays HOM05D003727 ORTHO05D004731 7.8e-94 348.2 273 60.8
Dinv18024 Davidia involucrata HOM05D003727 ORTHO05D004731 3.0e-93 346.3 240 68.3
AUR62029978 Chenopodium quinoa HOM05D003727 ORTHO05D004731 4.0e-74 282.7 203 69.5
MD16G1136800 Malus domestica HOM05D003727 ORTHO05D004731 2.2e-72 276.9 177 74.0
Cc00_g15630 Coffea canephora HOM05D003727 ORTHO05D004731 4.2e-71 272.7 238 59.7
CSS0050306 Camellia sinensis var. sinensis HOM05D003727 ORTHO05D004731 8.1e-67 258.5 197 59.9
FAN07G0809 Fragaria x ananassa HOM05D003727 ORTHO05D004731 6.0e-62 242.3 197 57.4
BcaC08g45280 Brassica carinata HOM05D003727 ORTHO05D004731 1.9e-52 210.7 170 58.2
vmacro06806 Vaccinium macrocarpon HOM05D003727 ORTHO05D426773 1.9e-47 194.1 262 47.3
Cre06.g252300 Chlamydomonas reinhardtii HOM05D003727 ORTHO05D034196 5.5e-47 192.6 437 29.5
PRCOL_00002805 Prasinoderma coloniale HOM05D003727 ORTHO05D034196 9.4e-47 191.8 363 31.7
Cfa023761 Carpinus fangiana HOM05D003727 ORTHO05D034196 6.5e-40 169.1 388 26.8
Glyma.14G127500 Glycine max HOM05D003727 ORTHO05D004731 1.9e-39 167.5 116 70.7
Zm00001eb392210 Zea mays HOM05D003727 ORTHO05D444991 5.1e-37 159.5 119 62.2
Zm00001eb394790 Zea mays HOM05D003727 ORTHO05D441672 1.5e-36 157.9 147 55.8
Zm00001eb400710 Zea mays HOM05D003727 ORTHO05D445430 2.2e-35 154.1 119 59.7
Cfa027032 Carpinus fangiana HOM05D003727 ORTHO05D122316 7.2e-31 139.0 301 30.2
Lsat_1_v5_gn_5_23680 Lactuca sativa HOM05D003727 ORTHO05D231959 9.4e-23 112.1 113 50.4
DCAR_023404 Daucus carota HOM05D002877 ORTHO05D003248 2.9e-16 90.5 83 48.2
VMungo0251G3273 Vigna mungo HOM05D003727 ORTHO05D000132 2.1e-06 57.8 49 55.1


User provided reference genes

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