Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c9_2440 Physcomitrium patens HOM05D003977 ORTHO05D004536 0.0e+00 2120.9 1072 100.0
Pp3c15_2800 Physcomitrium patens HOM05D003977 ORTHO05D004536 0.0e+00 1854.7 1072 87.4
Mapoly0131s0020 Marchantia polymorpha HOM05D003977 ORTHO05D004536 1.1e-281 973.8 1020 53.8
AagrBONN_evm.TU.Sc2ySwM_362.2961 Anthoceros agrestis HOM05D003977 ORTHO05D004536 8.1e-269 931.0 1030 51.6
SEGI_35648 Sequoiadendron giganteum HOM05D003977 ORTHO05D004536 7.1e-265 917.9 983 51.1
ATR0582G127 Amborella trichopoda HOM05D003977 ORTHO05D004536 4.0e-260 902.1 989 50.7
THA.LOC104799327 Tarenaya hassleriana HOM05D003977 ORTHO05D004536 9.6e-254 880.9 971 51.0
Nn4g22094 Nelumbo nucifera HOM05D003977 ORTHO05D004536 1.3e-250 870.5 974 49.6
TAR622G1067 Trochodendron aralioides HOM05D003977 ORTHO05D004536 1.3e-250 870.5 988 50.2
ClCG05G026990 Citrullus lanatus HOM05D003977 ORTHO05D004536 1.7e-250 870.2 978 49.9
Sed0027944 Sechium edule HOM05D003977 ORTHO05D004536 4.9e-250 868.6 971 49.6
Dinv14623 Davidia involucrata HOM05D003977 ORTHO05D004536 1.1e-249 867.5 983 49.3
Prupe.2G042800 Prunus persica HOM05D003977 ORTHO05D004536 2.5e-249 866.3 972 50.0
Aa31LG7G12510 Aethionema arabicum HOM05D003977 ORTHO05D004536 5.5e-249 865.1 972 50.8
MD07G1045800 Malus domestica HOM05D003977 ORTHO05D004536 7.1e-249 864.8 979 50.1
MELO3C012492.2 Cucumis melo HOM05D003977 ORTHO05D004536 1.2e-248 864.0 978 49.7
Carub.0003s1164 Capsella rubella HOM05D003977 ORTHO05D004536 1.6e-248 863.6 972 50.3
MBI11_g07996_MAGBIO Magnolia biondii HOM05D003977 ORTHO05D004536 1.6e-248 863.6 995 49.1
THA.LOC104826752 Tarenaya hassleriana HOM05D003977 ORTHO05D004536 2.1e-248 863.2 987 50.2
Cfa010949 Carpinus fangiana HOM05D003977 ORTHO05D004536 4.6e-248 862.1 979 49.6
CiPaw.06G056400 Carya illinoinensis HOM05D003977 ORTHO05D004536 4.6e-248 862.1 977 49.6
Ciclev10000128m.g Citrus clementina HOM05D003977 ORTHO05D004536 4.6e-248 862.1 1011 48.9
CsaV3_5G036930 Cucumis sativus L. HOM05D003977 ORTHO05D004536 7.9e-248 861.3 979 49.7
Lalb_Chr03g0032201 Lupinus albus HOM05D003977 ORTHO05D004536 1.3e-247 860.5 988 49.0
Sp3g10500 Schrenkiella parvula HOM05D003977 ORTHO05D004536 1.3e-247 860.5 971 49.9
RcHm_v2.0_Chr1g0326641 Rosa chinensis HOM05D003977 ORTHO05D004536 2.3e-247 859.8 1012 48.9
Rhsim12G0015900 Rhododendron simsii HOM05D003977 ORTHO05D004536 3.0e-247 859.4 976 49.3
Dinv06987 Davidia involucrata HOM05D003977 ORTHO05D004536 3.9e-247 859.0 977 49.8
Nn3g16238 Nelumbo nucifera HOM05D003977 ORTHO05D004536 6.7e-247 858.2 978 49.0
Ca_23978_v3 Cicer arietinum L. HOM05D003977 ORTHO05D004536 8.7e-247 857.8 995 48.5
Lj1g0022785 Lotus japonicus HOM05D003977 ORTHO05D004536 8.7e-247 857.8 989 48.7
Glyma.13G192400 Glycine max HOM05D003977 ORTHO05D004536 3.3e-246 855.9 983 49.3
Atru.chr12.1306 Acer truncatum HOM05D003977 ORTHO05D004536 4.3e-246 855.5 987 50.1
Glyma.15G230300 Glycine max HOM05D003977 ORTHO05D004536 1.6e-245 853.6 983 49.0
GSVIVG01035560001 Vitis vinifera HOM05D003977 ORTHO05D004536 2.1e-245 853.2 985 49.0
Sed0009106 Sechium edule HOM05D003977 ORTHO05D004536 2.8e-245 852.8 990 48.6
Cc11_g14880 Coffea canephora HOM05D003977 ORTHO05D004536 3.7e-245 852.4 974 49.1
CSS0046878 Camellia sinensis var. sinensis HOM05D003977 ORTHO05D004536 4.8e-245 852.0 1009 48.3
BcaB04g18687 Brassica carinata HOM05D003977 ORTHO05D004536 6.2e-245 851.7 974 49.7
Duzib106G1228 Durio zibethinus HOM05D003977 ORTHO05D004536 6.2e-245 851.7 996 48.4
Haze_02995 Corylus avellana HOM05D003977 ORTHO05D004536 8.2e-245 851.3 988 49.3
AT3G12280 Arabidopsis thaliana HOM05D003977 ORTHO05D004536 1.8e-244 850.1 975 49.5
DCAR_004259 Daucus carota HOM05D003977 ORTHO05D004536 3.1e-244 849.4 986 49.4
DCAR_004260 Daucus carota HOM05D003977 ORTHO05D004536 3.1e-244 849.4 986 49.4
Duzib114G0684 Durio zibethinus HOM05D003977 ORTHO05D004536 3.1e-244 849.4 987 49.5
Lalb_Chr19g0132941 Lupinus albus HOM05D003977 ORTHO05D004536 3.1e-244 849.4 987 48.6
A05p37080 Brassica napus HOM05D003977 ORTHO05D004536 4.0e-244 849.0 968 50.5
MD02G1277700 Malus domestica HOM05D003977 ORTHO05D004536 4.0e-244 849.0 976 49.8
CARHR086830 Cardamine hirsuta HOM05D003977 ORTHO05D004536 5.3e-244 848.6 971 49.8
Potri.001G031400 Populus trichocarpa HOM05D003977 ORTHO05D004536 5.3e-244 848.6 1004 48.7
QL93p0049_0031 Quercus lobata HOM05D003977 ORTHO05D004536 5.3e-244 848.6 980 48.2
C05p55510 Brassica napus HOM05D003977 ORTHO05D004536 6.9e-244 848.2 972 50.2
AL3G23940 Arabidopsis lyrata HOM05D003977 ORTHO05D004536 9.0e-244 847.8 967 49.6
BolC5t34217H Brassica oleracea HOM05D003977 ORTHO05D004536 4.5e-243 845.5 976 50.0
Aqoxy5G03020 Aquilegia oxysepala HOM05D003977 ORTHO05D004536 1.0e-242 844.3 983 49.1
Gohir.D04G016400 Gossypium hirsutum HOM05D003977 ORTHO05D004536 2.2e-242 843.2 995 47.9
TPR.G8543 Trifolium pratense HOM05D003977 ORTHO05D004536 2.2e-242 843.2 986 48.4
C01p53050 Brassica napus HOM05D003977 ORTHO05D004536 2.9e-242 842.8 968 49.3
FvH4_7g03720 Fragaria vesca HOM05D003977 ORTHO05D004536 2.9e-242 842.8 1008 47.6
QL04p021130 Quercus lobata HOM05D003977 ORTHO05D004536 3.8e-242 842.4 980 48.0
BcaC09g48227 Brassica carinata HOM05D003977 ORTHO05D004536 4.9e-242 842.0 968 49.0
vmacro01007 Vaccinium macrocarpon HOM05D003977 ORTHO05D004536 6.5e-242 841.6 993 48.1
Gohir.A05G399500 Gossypium hirsutum HOM05D003977 ORTHO05D004536 1.1e-241 840.9 1004 47.9
Thhalv10019977m.g Eutrema salsugineum HOM05D003977 ORTHO05D004536 1.4e-241 840.5 971 49.6
Gohir.D04G016500 Gossypium hirsutum HOM05D003977 ORTHO05D004536 1.9e-241 840.1 988 48.3
Gorai.012G019200 Gossypium raimondii HOM05D003977 ORTHO05D004536 2.5e-241 839.7 988 48.5
BolC1t05248H Brassica oleracea HOM05D003977 ORTHO05D004536 4.2e-241 839.0 968 49.0
Prupe.8G086800 Prunus persica HOM05D003977 ORTHO05D004536 7.1e-241 838.2 979 49.0
FAN06G3123 Fragaria x ananassa HOM05D003977 ORTHO05D004536 9.3e-241 837.8 978 48.5
Glyma.04G192200 Glycine max HOM05D003977 ORTHO05D004536 9.3e-241 837.8 975 48.4
arahy.Tifrunner.gnm1.ann1.I0XR4S Arachis hypogaea HOM05D003977 ORTHO05D004536 1.2e-240 837.4 1005 48.2
HanXRQChr06g0175421 Helianthus annuus HOM05D003977 ORTHO05D004536 1.6e-240 837.0 994 47.4
Gorai.012G019100 Gossypium raimondii HOM05D003977 ORTHO05D004536 3.5e-240 835.9 998 47.6
Medtr8g040560 Medicago truncatula HOM05D003977 ORTHO05D004536 3.5e-240 835.9 977 48.4
PSO478G2410 Papaver somniferum HOM05D003977 ORTHO05D004536 3.5e-240 835.9 983 48.5
SEGI_33786 Sequoiadendron giganteum HOM05D003977 ORTHO05D004536 4.6e-240 835.5 884 51.0
VMungo1127G0455 Vigna mungo HOM05D003977 ORTHO05D004536 7.9e-240 834.7 980 48.2
FAN03G2084 Fragaria x ananassa HOM05D003977 ORTHO05D004536 1.8e-239 833.6 978 48.2
PGSC0003DMG400011581 Solanum tuberosum HOM05D003977 ORTHO05D004536 1.8e-239 833.6 973 48.7
Thecc.10G142800 Theobroma cacao HOM05D003977 ORTHO05D004536 1.8e-239 833.6 983 48.7
Solyc09g091280.4 Solanum lycopersicum HOM05D003977 ORTHO05D004536 3.0e-239 832.8 976 48.8
Sabra01G0022500 Salix brachista HOM05D003977 ORTHO05D004536 3.9e-239 832.4 1046 46.6
PSO017G2490 Papaver somniferum HOM05D003977 ORTHO05D004536 5.1e-239 832.0 983 48.3
Phvul.011G201200 Phaseolus vulgaris HOM05D003977 ORTHO05D004536 6.7e-239 831.6 979 48.2
Psat4g145000 Pisum sativum HOM05D003977 ORTHO05D004536 1.1e-238 830.9 975 48.7
Sopen09g034250 Solanum pennellii HOM05D003977 ORTHO05D004536 1.1e-238 830.9 976 48.7
FAN01G0005 Fragaria x ananassa HOM05D003977 ORTHO05D004536 2.5e-238 829.7 985 48.1
CiPaw.14G009300 Carya illinoinensis HOM05D003977 ORTHO05D004536 3.3e-238 829.3 975 48.5
arahy.Tifrunner.gnm1.ann1.Q9GEU7 Arachis hypogaea HOM05D003977 ORTHO05D004536 7.4e-238 828.2 995 48.2
Zm00001eb037120 Zea mays HOM05D003977 ORTHO05D004536 1.3e-237 827.4 1008 47.4
AUR62033843 Chenopodium quinoa HOM05D003977 ORTHO05D004536 3.7e-237 825.9 986 48.0
CANSAT56G0684 Cannabis sativa HOM05D003977 ORTHO05D004536 1.1e-236 824.3 985 47.8
BolC3t16833H Brassica oleracea HOM05D003977 ORTHO05D004536 1.8e-236 823.5 973 48.1
DCAR_008196 Daucus carota HOM05D003977 ORTHO05D004536 5.3e-236 822.0 976 47.3
Sc02g0008490 Simmondsia chinensis HOM05D003977 ORTHO05D004536 5.3e-236 822.0 993 47.4
TWI38G1846 Tripterygium wilfordii HOM05D003977 ORTHO05D004536 5.3e-236 822.0 995 47.1
A03p37570 Brassica napus HOM05D003977 ORTHO05D004536 6.9e-236 821.6 972 48.1
C03p45560 Brassica napus HOM05D003977 ORTHO05D004536 6.9e-236 821.6 973 48.0
AUR62035738 Chenopodium quinoa HOM05D003977 ORTHO05D004536 6.9e-236 821.6 991 47.8
TWI15G1223 Tripterygium wilfordii HOM05D003977 ORTHO05D004536 9.0e-236 821.2 1001 46.8
COL.COLO4_20737 Corchorus olitorius HOM05D003977 ORTHO05D004536 2.0e-235 820.1 996 47.7
Lj3g0027102 Lotus japonicus HOM05D003977 ORTHO05D004536 2.6e-235 819.7 1020 46.5
CAN.G1588.14 Capsicum annuum HOM05D003977 ORTHO05D004536 3.4e-235 819.3 989 48.0
BraA03t12911Z Brassica rapa HOM05D003977 ORTHO05D004536 5.0e-234 815.5 988 47.5
Os08g0538700 Oryza sativa ssp. japonica HOM05D003977 ORTHO05D004536 1.9e-233 813.5 972 47.3
SalBow2G0230 Salvia bowleyana HOM05D003977 ORTHO05D004536 5.5e-233 812.0 972 48.6
PGR031G0564 Punica granatum HOM05D003977 ORTHO05D004536 1.2e-232 810.8 980 47.8
Peaxi162Scf00047g01540 Petunia axillaris HOM05D003977 ORTHO05D004536 2.1e-232 810.1 980 48.0
HPP92_000321 Vanilla planifolia HOM05D003977 ORTHO05D004536 1.0e-231 807.7 977 47.4
ECA246G4717 Erigeron canadensis HOM05D003977 ORTHO05D004536 2.5e-230 803.1 971 46.2
FAN10G3794 Fragaria x ananassa HOM05D003977 ORTHO05D004536 1.3e-229 800.8 1007 47.0
Eucgr.G03211 Eucalyptus grandis HOM05D003977 ORTHO05D004536 3.7e-229 799.3 973 47.4
TAR629G1670 Trochodendron aralioides HOM05D003977 ORTHO05D004536 1.1e-228 797.7 937 48.5
AUR62041503 Chenopodium quinoa HOM05D003977 ORTHO05D004536 2.4e-228 796.6 1010 46.7
EL10Ac1g02273 Beta vulgaris HOM05D003977 ORTHO05D004536 3.1e-228 796.2 1016 46.9
SGA_v2.0_scaffold81G25979 Striga asiatica HOM05D003977 ORTHO05D004536 4.1e-228 795.8 1001 47.2
Migut.K01127 Erythranthe guttata HOM05D003977 ORTHO05D004536 5.9e-227 792.0 990 47.4
MSTRG.444 Avicennia marina HOM05D003977 ORTHO05D004536 7.7e-227 791.6 974 47.4
Gorai.009G299000 Gossypium raimondii HOM05D003977 ORTHO05D004536 1.3e-226 790.8 1005 46.9
CDE09G1395 Ceratophyllum demersum HOM05D003977 ORTHO05D004536 1.9e-225 786.9 968 46.9
Lsat_1_v5_gn_3_33021 Lactuca sativa HOM05D003977 ORTHO05D004536 7.2e-225 785.0 961 46.6
SMO134G0004 Selaginella moellendorffii HOM05D003977 ORTHO05D004536 7.9e-224 781.6 916 48.8
Gohir.A05G283400 Gossypium hirsutum HOM05D003977 ORTHO05D004536 6.7e-223 778.5 974 47.0
Gohir.D05G284400 Gossypium hirsutum HOM05D003977 ORTHO05D004536 5.3e-220 768.8 965 47.4
PSO478G5179 Papaver somniferum HOM05D003977 ORTHO05D004536 1.2e-219 767.7 976 46.3
Hund13302 Selenicereus undatus HOM05D003977 ORTHO05D004536 4.5e-219 765.8 999 46.3
Gohir.A05G399400 Gossypium hirsutum HOM05D003977 ORTHO05D004536 5.0e-218 762.3 890 48.8
Manes.16G045800 Manihot esculenta HOM05D003977 ORTHO05D004536 6.7e-215 751.9 871 50.2
Manes.03G097800 Manihot esculenta HOM05D003977 ORTHO05D004536 4.7e-208 729.2 860 49.1
unitig_26.g10435 Utricularia gibba HOM05D003977 ORTHO05D004536 1.7e-205 720.7 1014 43.7
Ah.05g166690 Amaranthus hybridus HOM05D003977 ORTHO05D004536 8.5e-202 708.4 886 46.4
BcaC01g04055 Brassica carinata HOM05D003977 ORTHO05D004536 2.5e-201 706.8 871 47.2
Zm00001eb198220 Zea mays HOM05D003977 ORTHO05D004536 7.0e-196 688.7 885 44.9
Nitab4.5_0002182g0050 Nicotiana tabacum HOM05D003977 ORTHO05D004536 3.0e-191 673.3 989 42.9
Nitab4.5_0008702g0020 Nicotiana tabacum HOM05D003977 ORTHO05D004536 6.3e-189 665.6 995 41.9
CDE02G2393 Ceratophyllum demersum HOM05D003977 ORTHO05D004536 1.2e-182 644.8 756 49.7
Os11g0533500 Oryza sativa ssp. japonica HOM05D003977 ORTHO05D004536 4.9e-181 639.4 976 40.4
SMO141G0281 Selaginella moellendorffii HOM05D003977 ORTHO05D004536 7.0e-180 635.6 943 42.1
Pp3c19_9580 Physcomitrium patens HOM05D003977 ORTHO05D004536 2.9e-173 613.6 622 55.1
CBR_g45825 Chara braunii HOM05D003977 ORTHO05D004536 2.6e-166 590.5 1094 38.0
Zm00001eb197990 Zea mays HOM05D003977 ORTHO05D004536 2.6e-166 590.5 798 45.2
CSS0026343 Camellia sinensis var. sinensis HOM05D003977 ORTHO05D004536 1.9e-161 574.3 993 40.0
Zm00001eb113470 Zea mays HOM05D003977 ORTHO05D004536 7.6e-158 562.4 792 44.4
MBI11_g02479_MAGBIO Magnolia biondii HOM05D003977 ORTHO05D004536 5.4e-156 556.2 727 45.7
Lj3A1077G55 Lonicera japonica HOM05D003977 ORTHO05D004536 1.4e-143 515.0 647 48.2
unitig_22.g6370 Utricularia gibba HOM05D003977 ORTHO05D004536 9.0e-143 512.3 653 46.2
Cpa.g.sc169.40 Carica papaya HOM05D003977 ORTHO05D004536 1.6e-139 501.5 955 35.8
GSVIVG01032958001 Vitis vinifera HOM05D003977 ORTHO05D004536 6.3e-120 436.4 554 46.6
HPP92_009801 Vanilla planifolia HOM05D002468 ORTHO05D005371 7.9e-115 419.5 799 37.5
Ciclev10003102m.g Citrus clementina HOM05D003977 ORTHO05D004536 1.8e-103 381.7 676 40.2
Manes.11G074000 Manihot esculenta HOM05D003977 ORTHO05D004536 1.5e-100 372.1 619 39.4
Ciclev10014630m.g Citrus clementina HOM05D003977 ORTHO05D004536 5.3e-95 353.6 619 38.9
Atru.chr6.2718 Acer truncatum HOM05D003977 ORTHO05D004536 8.3e-80 303.1 601 35.8
BraA05t22505Z Brassica rapa HOM05D003977 ORTHO05D004536 2.5e-76 291.6 381 43.3
SEGI_04896 Sequoiadendron giganteum HOM05D003977 ORTHO05D004536 9.8e-73 279.6 298 52.3
PRCOL_00001859 Prasinoderma coloniale HOM05D003977 ORTHO05D004536 7.8e-70 270.0 1051 27.3
Pp3c19_9596 Physcomitrium patens HOM05D003977 ORTHO05D004536 6.2e-67 260.4 283 51.9
QL04p021333 Quercus lobata HOM05D003977 ORTHO05D004536 1.5e-65 255.8 565 33.3
Cre06.g255450 Chlamydomonas reinhardtii HOM05D003977 ORTHO05D004536 1.9e-55 222.2 913 24.9
MCO08G295 Micromonas commoda HOM05D003977 ORTHO05D004536 7.1e-55 220.3 565 31.2
Pp3c19_9550 Physcomitrium patens HOM05D003977 ORTHO05D004536 6.6e-53 213.8 180 57.8
Hma1.2p1_0073F.1_g038600 Hydrangea macrophylla HOM05D003977 ORTHO05D004536 1.4e-50 206.1 228 49.6
unitig_22.g6371 Utricularia gibba HOM05D003977 ORTHO05D004536 1.6e-46 192.6 217 49.3
Hma1.2p1_0164F.1_g073080 Hydrangea macrophylla HOM05D003977 ORTHO05D004536 1.1e-44 186.4 189 52.9
HanXRQChr04g0106401 Helianthus annuus HOM05D003977 ORTHO05D004536 1.1e-42 179.9 263 40.3
CDE02G2628 Ceratophyllum demersum HOM05D003977 ORTHO05D004536 1.7e-37 162.5 202 41.6
Oeu034276.1 Olea europaea HOM05D003977 ORTHO05D004536 5.8e-25 120.9 226 36.7
SalBow1G6973 Salvia bowleyana HOM05D003977 ORTHO05D004536 6.7e-21 107.5 128 46.9
Hma1.2p1_0468F.1_g158780 Hydrangea macrophylla HOM05D003977 ORTHO05D004536 2.5e-20 105.5 128 40.6
SalBow2G2207 Salvia bowleyana HOM05D003977 ORTHO05D004536 2.9e-16 92.0 115 45.2
C02p49640 Brassica napus HOM05D003977 ORTHO05D004536 2.7e-14 85.5 156 35.3
BolC2t11042H Brassica oleracea HOM05D003977 ORTHO05D004536 3.0e-13 82.0 175 33.1
Rhsim02G0185900 Rhododendron simsii HOM05D016728 ORTHO05D340288 2.1e-11 75.9 62 59.7
Hma1.2p1_0112F.1_g054450 Hydrangea macrophylla HOM05D000462 ORTHO05D004536 8.2e-11 73.9 88 40.9
Hma1.2p1_1036F.1_g250510 Hydrangea macrophylla HOM05D000462 ORTHO05D004536 1.1e-10 73.6 88 40.9


User provided reference genes

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