Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c8_21700 Physcomitrium patens HOM05D005861 ORTHO05D007151 5.1e-298 1026.9 508 100.0
AagrBONN_evm.TU.Sc2ySwM_344.4889 Anthoceros agrestis HOM05D005861 ORTHO05D007151 9.4e-167 590.9 450 62.2
Mapoly0003s0096 Marchantia polymorpha HOM05D005861 ORTHO05D007151 2.2e-163 579.7 456 59.6
Aqoxy3G04101 Aquilegia oxysepala HOM05D005861 ORTHO05D007151 1.9e-151 540.0 422 59.0
GSVIVG01012161001 Vitis vinifera HOM05D005861 ORTHO05D007151 5.5e-151 538.5 423 59.6
Manes.03G071200 Manihot esculenta HOM05D005861 ORTHO05D007151 7.2e-151 538.1 420 58.8
PSO063G0366 Papaver somniferum HOM05D005861 ORTHO05D007151 1.0e-149 534.3 420 58.8
PSO782G3554 Papaver somniferum HOM05D005861 ORTHO05D007151 1.2e-148 530.8 421 58.9
Prupe.4G119100 Prunus persica HOM05D005861 ORTHO05D007151 2.6e-148 529.6 416 60.1
MELO3C002396.2 Cucumis melo HOM05D005861 ORTHO05D007151 4.4e-148 528.9 425 59.8
SGA_v2.0_scaffold298G47711 Striga asiatica HOM05D005861 ORTHO05D007151 5.7e-148 528.5 416 58.2
CsaV3_1G010060 Cucumis sativus L. HOM05D005861 ORTHO05D007151 1.3e-147 527.3 422 59.2
Lalb_Chr18g0052021 Lupinus albus HOM05D005861 ORTHO05D007151 1.3e-147 527.3 417 59.2
Sed0025210 Sechium edule HOM05D005861 ORTHO05D007151 1.7e-147 526.9 441 56.5
Glyma.15G156500 Glycine max HOM05D005861 ORTHO05D007151 2.8e-147 526.2 416 58.9
TAR636G0982 Trochodendron aralioides HOM05D005861 ORTHO05D007151 2.8e-147 526.2 421 59.6
MD10G1226200 Malus domestica HOM05D005861 ORTHO05D007151 3.7e-147 525.8 420 59.3
TWI38G1305 Tripterygium wilfordii HOM05D005861 ORTHO05D007151 4.9e-147 525.4 416 58.4
ClCG03G004130 Citrullus lanatus HOM05D005861 ORTHO05D007151 6.3e-147 525.0 420 58.6
Dinv05874 Davidia involucrata HOM05D005861 ORTHO05D007151 6.3e-147 525.0 416 58.4
Sopen02g026550 Solanum pennellii HOM05D005861 ORTHO05D007151 8.3e-147 524.6 416 58.7
Cfa001144 Carpinus fangiana HOM05D005861 ORTHO05D007151 1.1e-146 524.2 416 58.4
arahy.Tifrunner.gnm1.ann1.MH4CM1 Arachis hypogaea HOM05D005861 ORTHO05D007151 1.4e-146 523.9 421 58.4
Potri.003G155100 Populus trichocarpa HOM05D005861 ORTHO05D007151 1.4e-146 523.9 423 57.4
Solyc02g081920.3 Solanum lycopersicum HOM05D005861 ORTHO05D007151 1.4e-146 523.9 416 58.4
Cc09_g01980 Coffea canephora HOM05D005861 ORTHO05D007151 1.8e-146 523.5 416 59.1
TPR.G26579 Trifolium pratense HOM05D005861 ORTHO05D007151 1.8e-146 523.5 420 58.8
Ciclev10015087m.g Citrus clementina HOM05D005861 ORTHO05D007151 2.4e-146 523.1 417 56.6
QL11p011864 Quercus lobata HOM05D005861 ORTHO05D007151 2.4e-146 523.1 422 57.8
QL93p0142_0007 Quercus lobata HOM05D005861 ORTHO05D007151 2.4e-146 523.1 422 57.8
Migut.M02023 Erythranthe guttata HOM05D005861 ORTHO05D007151 4.1e-146 522.3 416 58.2
CSS0003156 Camellia sinensis var. sinensis HOM05D005861 ORTHO05D007151 7.0e-146 521.5 416 57.9
Thecc.09G140900 Theobroma cacao HOM05D005861 ORTHO05D007151 9.2e-146 521.2 416 59.1
Gorai.009G012700 Gossypium raimondii HOM05D005861 ORTHO05D007151 1.2e-145 520.8 420 57.4
MSTRG.18594 Avicennia marina HOM05D005861 ORTHO05D007151 2.7e-145 519.6 416 58.2
CAN.G809.40 Capsicum annuum HOM05D005861 ORTHO05D007151 2.7e-145 519.6 417 58.8
Eucgr.D00007 Eucalyptus grandis HOM05D005861 ORTHO05D007151 2.7e-145 519.6 418 58.9
Migut.O00467 Erythranthe guttata HOM05D005861 ORTHO05D007151 3.5e-145 519.2 416 58.2
Glyma.09G049800 Glycine max HOM05D005861 ORTHO05D007151 3.5e-145 519.2 420 57.6
VMungo1309G1344 Vigna mungo HOM05D005861 ORTHO05D007151 4.5e-145 518.8 423 56.7
FvH4_3g13130 Fragaria vesca HOM05D005861 ORTHO05D007151 7.8e-145 518.1 444 56.8
Lj6g0026320 Lotus japonicus HOM05D005861 ORTHO05D007151 1.3e-144 517.3 417 58.0
Nn7g38377 Nelumbo nucifera HOM05D005861 ORTHO05D007151 1.3e-144 517.3 417 59.0
Peaxi162Scf00036g00158 Petunia axillaris HOM05D005861 ORTHO05D007151 1.7e-144 516.9 415 58.3
RcHm_v2.0_Chr5g0021381 Rosa chinensis HOM05D005861 ORTHO05D007151 2.9e-144 516.2 420 58.3
THA.LOC104811881 Tarenaya hassleriana HOM05D005861 ORTHO05D007151 2.9e-144 516.2 420 56.4
Phvul.009G243500 Phaseolus vulgaris HOM05D005861 ORTHO05D007151 5.0e-144 515.4 416 57.0
PGSC0003DMG401007333 Solanum tuberosum HOM05D005861 ORTHO05D007151 8.6e-144 514.6 463 54.2
Gohir.A05G011700 Gossypium hirsutum HOM05D005861 ORTHO05D007151 1.1e-143 514.2 420 57.4
Atru.chr10.266 Acer truncatum HOM05D005861 ORTHO05D007151 3.3e-143 512.7 417 57.6
AT4G20130 Arabidopsis thaliana HOM05D005861 ORTHO05D007151 7.3e-143 511.5 435 55.9
Sc24g0002940 Simmondsia chinensis HOM05D005861 ORTHO05D007151 2.8e-142 509.6 416 56.5
Aa31LG6G2540 Aethionema arabicum HOM05D005861 ORTHO05D007151 1.0e-141 507.7 419 57.5
Carub.0007s2100 Capsella rubella HOM05D005861 ORTHO05D007151 1.0e-141 507.7 416 57.7
Medtr2g035660 Medicago truncatula HOM05D005861 ORTHO05D007151 1.0e-141 507.7 416 56.7
FAN16G2684 Fragaria x ananassa HOM05D005861 ORTHO05D007151 1.8e-141 506.9 471 53.5
FAN21G1611 Fragaria x ananassa HOM05D005861 ORTHO05D007151 3.1e-141 506.1 471 53.5
A08p14640 Brassica napus HOM05D005861 ORTHO05D007151 8.9e-141 504.6 416 57.0
BraA08t33451Z Brassica rapa HOM05D005861 ORTHO05D007151 8.9e-141 504.6 416 57.0
CARHR226960 Cardamine hirsuta HOM05D005861 ORTHO05D007151 1.5e-140 503.8 416 57.0
C03p82790 Brassica napus HOM05D005861 ORTHO05D007151 7.5e-140 501.5 416 57.0
BolC3t20561H Brassica oleracea HOM05D005861 ORTHO05D007151 7.5e-140 501.5 416 57.0
AL7G33690 Arabidopsis lyrata HOM05D005861 ORTHO05D007151 1.3e-139 500.7 416 56.5
BcaB03g11658 Brassica carinata HOM05D005861 ORTHO05D007151 1.3e-139 500.7 416 56.5
BcaC01g00656 Brassica carinata HOM05D005861 ORTHO05D007151 1.3e-139 500.7 416 56.7
PGR004G1814 Punica granatum HOM05D005861 ORTHO05D007151 3.7e-139 499.2 401 60.3
arahy.Tifrunner.gnm1.ann1.RN3XR3 Arachis hypogaea HOM05D005861 ORTHO05D007151 4.9e-139 498.8 421 56.5
Nitab4.5_0000844g0330 Nicotiana tabacum HOM05D005861 ORTHO05D007151 4.9e-139 498.8 449 53.7
Psat1g150560 Pisum sativum HOM05D005861 ORTHO05D007151 2.4e-138 496.5 380 60.0
Sp7g18560 Schrenkiella parvula HOM05D005861 ORTHO05D007151 5.4e-138 495.4 416 56.0
SMO331G0022 Selaginella moellendorffii HOM05D005861 ORTHO05D007151 9.2e-138 494.6 420 54.3
Haze_05240 Corylus avellana HOM05D005861 ORTHO05D007151 2.0e-137 493.4 498 50.0
ECA236G3447 Erigeron canadensis HOM05D005861 ORTHO05D007151 4.6e-137 492.3 416 54.3
HanXRQChr04g0116561 Helianthus annuus HOM05D005861 ORTHO05D007151 4.6e-137 492.3 450 51.8
Oeu008732.1 Olea europaea HOM05D005861 ORTHO05D007151 1.0e-136 491.1 390 58.7
Nitab4.5_0000632g0140 Nicotiana tabacum HOM05D005861 ORTHO05D007151 1.3e-136 490.7 416 56.5
DCAR_003751 Daucus carota HOM05D005861 ORTHO05D007151 1.7e-136 490.3 431 53.8
TWI63G1685 Tripterygium wilfordii HOM05D005861 ORTHO05D007151 7.3e-135 485.0 441 53.7
EL10Ac3g07109 Beta vulgaris HOM05D005861 ORTHO05D007151 5.2e-133 478.8 374 58.0
Thhalv10027180m.g Eutrema salsugineum HOM05D005861 ORTHO05D007151 1.2e-132 477.6 416 54.8
vmacro03562 Vaccinium macrocarpon HOM05D005861 ORTHO05D007151 5.8e-132 475.3 535 45.4
unitig_37.g12046 Utricularia gibba HOM05D005861 ORTHO05D007151 7.3e-127 458.4 415 53.0
FAN25G2772 Fragaria x ananassa HOM05D005861 ORTHO05D007151 4.0e-125 452.6 477 49.1
CiPaw.09G138900 Carya illinoinensis HOM05D005861 ORTHO05D007151 2.0e-124 450.3 420 52.6
Gohir.D05G012400 Gossypium hirsutum HOM05D005861 ORTHO05D007151 3.4e-124 449.5 367 56.7
CDE02G4422 Ceratophyllum demersum HOM05D005861 ORTHO05D007151 8.6e-120 434.9 420 52.6
Zm00001eb345040 Zea mays HOM05D005861 ORTHO05D007151 7.3e-119 431.8 372 55.1
Duzib168G0529 Durio zibethinus HOM05D005861 ORTHO05D007151 3.1e-117 426.4 420 51.4
AUR62039890 Chenopodium quinoa HOM05D005861 ORTHO05D007151 1.1e-114 417.9 374 52.1
AUR62040329 Chenopodium quinoa HOM05D005861 ORTHO05D007151 2.1e-113 413.7 374 51.6
Gohir.D05G012700 Gossypium hirsutum HOM05D005861 ORTHO05D007151 2.3e-112 410.2 312 59.3
Cpa.g.sc30.93 Carica papaya HOM05D005861 ORTHO05D007151 3.0e-112 409.8 403 50.1
ATR0763G186 Amborella trichopoda HOM05D005479 ORTHO05D007756 1.1e-111 407.9 303 61.4
CBR_g61479 Chara braunii HOM05D005861 ORTHO05D007151 7.3e-111 405.2 409 48.2
Lsat_1_v5_gn_7_27441 Lactuca sativa HOM05D005861 ORTHO05D007151 3.2e-106 389.8 345 51.3
Sabra03G0112200 Salix brachista HOM05D005861 ORTHO05D007151 3.2e-106 389.8 456 45.0
Ah.08g212320 Amaranthus hybridus HOM05D005861 ORTHO05D007151 2.2e-99 367.1 398 46.5
Gorai.N022300 Gossypium raimondii HOM05D005861 ORTHO05D007151 3.0e-80 303.5 420 41.7
COL.COLO4_24113 Corchorus olitorius HOM05D005861 ORTHO05D003578 5.7e-79 299.3 373 44.2
HPP92_009503 Vanilla planifolia HOM05D005861 ORTHO05D007151 2.8e-70 270.4 236 54.7
Ca_01979_v3 Cicer arietinum L. HOM05D005861 ORTHO05D007151 1.0e-64 251.9 223 53.8
A04p29830 Brassica napus HOM05D005861 ORTHO05D007151 5.1e-64 249.6 292 45.2
Hund25553 Selenicereus undatus HOM05D005861 ORTHO05D007151 8.8e-64 248.8 256 50.0
Lj1g0026190 Lotus japonicus HOM05D005861 ORTHO05D007151 7.2e-58 229.2 229 49.8
BraA04t18443Z Brassica rapa HOM05D005861 ORTHO05D007151 2.0e-55 221.1 272 43.8
Ca_28373_v3 Cicer arietinum L. HOM05D005861 ORTHO05D007151 2.6e-52 210.7 136 64.7
Cfa001273 Carpinus fangiana HOM05D005861 ORTHO05D007151 6.1e-49 199.5 214 48.6
QL93p2001_0005 Quercus lobata HOM05D005861 ORTHO05D007151 4.5e-44 183.3 166 52.4
RcHm_v2.0_Chr5g0063511 Rosa chinensis HOM05D005861 ORTHO05D007151 8.5e-43 179.1 115 68.7
MD05G1244800 Malus domestica HOM05D005861 ORTHO05D007151 1.1e-34 152.1 207 39.1
VMungo0344G0001 Vigna mungo HOM05D005861 ORTHO05D007151 9.5e-34 149.1 130 50.8
VMungo1383G1601 Vigna mungo HOM05D005861 ORTHO05D007151 9.5e-34 149.1 130 50.8
HPP92_009502 Vanilla planifolia HOM05D005861 ORTHO05D007151 6.8e-32 142.9 120 51.7
Lj3g0008154 Lotus japonicus HOM05D005861 ORTHO05D007151 9.8e-31 139.0 142 48.6
RcHm_v2.0_Chr3g0456081 Rosa chinensis HOM05D005861 ORTHO05D007151 1.7e-30 138.3 93 64.5
Duzib187G1938 Durio zibethinus HOM05D005861 ORTHO05D007151 1.4e-29 135.2 95 61.1
Lj6g0014924 Lotus japonicus HOM05D005861 ORTHO05D007151 1.8e-29 134.8 90 63.3
Os05g0587200 Oryza sativa ssp. japonica HOM05D005861 ORTHO05D007151 5.4e-29 133.3 89 61.8
Lj4g0007893 Lotus japonicus HOM05D005861 ORTHO05D007151 2.3e-27 127.9 95 57.9
Lj1g0019510 Lotus japonicus HOM05D005861 ORTHO05D007151 8.3e-22 109.4 67 65.7
PGSC0003DMG400012780 Solanum tuberosum HOM05D005861 ORTHO05D007151 3.6e-17 94.0 103 47.6
Lj1g0009858 Lotus japonicus HOM05D005861 ORTHO05D007151 6.2e-17 93.2 111 45.9
FAN12G1233 Fragaria x ananassa HOM05D005456 ORTHO05D006805 5.2e-16 90.1 422 25.6
FAN17G1535 Fragaria x ananassa HOM05D005456 ORTHO05D006805 1.2e-15 89.0 422 25.4
Ah.11g040820 Amaranthus hybridus HOM05D005861 ORTHO05D007151 2.0e-15 88.2 78 50.0
FAN07G2817 Fragaria x ananassa HOM05D005456 ORTHO05D006805 9.8e-15 85.9 413 25.2
MD16G1067900 Malus domestica HOM05D005456 ORTHO05D006805 1.7e-14 85.1 422 24.2
RcHm_v2.0_Chr4g0439211 Rosa chinensis HOM05D005456 ORTHO05D006805 2.9e-14 84.3 413 25.2
Aa31LG1G1000 Aethionema arabicum HOM05D005456 ORTHO05D006805 1.4e-13 82.0 429 23.5
CDE07G0572 Ceratophyllum demersum HOM05D005456 ORTHO05D006805 1.6e-12 78.6 427 23.4
AUR62032826 Chenopodium quinoa HOM05D005456 ORTHO05D006805 1.6e-12 78.6 411 25.8
Cpa.g.sc991.1 Carica papaya HOM05D005456 ORTHO05D006805 2.1e-12 78.2 422 24.4
EL10Ac6g13252 Beta vulgaris HOM05D005456 ORTHO05D006805 4.6e-12 77.0 418 23.9
Atru.chr11.1728 Acer truncatum HOM05D005456 ORTHO05D006805 7.8e-12 76.3 419 22.9
Glyma.20G031600 Glycine max HOM05D005456 ORTHO05D006805 7.8e-12 76.3 422 23.5
ClCG09G021880 Citrullus lanatus HOM05D005456 ORTHO05D006805 1.3e-11 75.5 426 23.2
Glyma.07G228300 Glycine max HOM05D005456 ORTHO05D006805 1.3e-11 75.5 422 23.5
A03p17620 Brassica napus HOM05D005861 ORTHO05D007151 1.7e-11 75.1 48 64.6
CSS0028557 Camellia sinensis var. sinensis HOM05D005456 ORTHO05D006805 1.7e-11 75.1 422 23.7
THA.LOC104801808 Tarenaya hassleriana HOM05D005456 ORTHO05D006805 2.3e-11 74.7 412 24.3
A03p17610 Brassica napus HOM05D005861 ORTHO05D007151 3.0e-11 74.3 50 64.0
Potri.008G090500 Populus trichocarpa HOM05D005456 ORTHO05D006805 3.0e-11 74.3 421 23.0
Ah.03g134770 Amaranthus hybridus HOM05D005456 ORTHO05D006805 3.9e-11 73.9 410 24.6
COL.COLO4_27983 Corchorus olitorius HOM05D005456 ORTHO05D006805 3.9e-11 73.9 422 24.6
Ah.02g129440 Amaranthus hybridus HOM05D005456 ORTHO05D006805 5.1e-11 73.6 403 24.6
PGR119G2207 Punica granatum HOM05D005456 ORTHO05D006805 5.1e-11 73.6 421 24.0
SGA_v2.0_scaffold455G51903 Striga asiatica HOM05D005456 ORTHO05D006805 6.6e-11 73.2 421 24.0
AagrBONN_evm.TU.Sc2ySwM_228.2416 Anthoceros agrestis HOM05D005456 ORTHO05D006805 1.1e-10 72.4 425 22.4
FAN22G2029 Fragaria x ananassa HOM05D005456 ORTHO05D006805 1.1e-10 72.4 399 24.3
CSS0014292 Camellia sinensis var. sinensis HOM05D005456 ORTHO05D006805 1.5e-10 72.0 414 23.7
MCO10G370 Micromonas commoda HOM05D001664 ORTHO05D001622 1.5e-10 72.0 363 28.7
ECA233G0392 Erigeron canadensis HOM05D005416 ORTHO05D007956 3.3e-10 70.9 436 22.5
Actinidia33219 Actinidia chinensis HOM05D005456 ORTHO05D006805 5.6e-10 70.1 412 23.5
Lsat_1_v5_gn_8_46201 Lactuca sativa HOM05D005416 ORTHO05D007956 9.5e-10 69.3 437 22.0
Lalb_Chr16g0385691 Lupinus albus HOM05D005456 ORTHO05D006805 9.5e-10 69.3 418 22.2
AL1G25870 Arabidopsis lyrata HOM05D005456 ORTHO05D006805 1.2e-09 68.9 428 22.7
CiPaw.05G130300 Carya illinoinensis HOM05D005456 ORTHO05D006805 1.2e-09 68.9 422 22.5
Lalb_Chr05g0220241 Lupinus albus HOM05D005456 ORTHO05D006805 1.2e-09 68.9 413 22.5
EL10Ac6g14151 Beta vulgaris HOM05D005416 ORTHO05D007956 1.6e-09 68.6 265 26.0
Nitab4.5_0000922g0060 Nicotiana tabacum HOM05D005416 ORTHO05D007956 1.6e-09 68.6 379 22.2
Sp1g12390 Schrenkiella parvula HOM05D005456 ORTHO05D006805 1.6e-09 68.6 421 22.8
TAR371G0369 Trochodendron aralioides HOM05D005416 ORTHO05D007956 1.6e-09 68.6 371 23.2
MD05G1244900 Malus domestica HOM05D005861 ORTHO05D007151 2.8e-09 67.8 72 48.6
TAR371G0290 Trochodendron aralioides HOM05D005416 ORTHO05D007956 2.8e-09 67.8 373 23.1
SMO244G0074 Selaginella moellendorffii HOM05D005252 ORTHO05D006788 3.6e-09 67.4 415 26.0
Carub.0001s1372 Capsella rubella HOM05D005456 ORTHO05D006805 6.2e-09 66.6 420 23.1
Sabra08G0067900 Salix brachista HOM05D005456 ORTHO05D006805 1.1e-08 65.9 367 23.4
Nitab4.5_0000198g0220 Nicotiana tabacum HOM05D005416 ORTHO05D007956 1.4e-08 65.5 379 21.9
Rhsim12G0132700 Rhododendron simsii HOM05D005456 ORTHO05D006805 1.4e-08 65.5 413 22.0
SalBow2G1542 Salvia bowleyana HOM05D005416 ORTHO05D007956 1.8e-08 65.1 361 24.4
Solyc01g005380.3 Solanum lycopersicum HOM05D005416 ORTHO05D007956 1.8e-08 65.1 370 21.9
Sopen01g001400 Solanum pennellii HOM05D005416 ORTHO05D007956 1.8e-08 65.1 374 22.2
AT1G14030 Arabidopsis thaliana HOM05D005456 ORTHO05D006805 2.3e-08 64.7 435 23.4
MCO15G480 Micromonas commoda HOM05D027521 ORTHO05D007151 2.3e-08 64.7 210 28.1
PGSC0003DMG400009729 Solanum tuberosum HOM05D005416 ORTHO05D007956 5.2e-08 63.5 373 21.7
Manes.01G033300 Manihot esculenta HOM05D005456 ORTHO05D006805 8.9e-08 62.8 373 22.5
Eucgr.G02480 Eucalyptus grandis HOM05D005456 ORTHO05D006805 1.5e-07 62.0 341 22.9
MD05G1244700 Malus domestica HOM05D005861 ORTHO05D007151 3.4e-07 60.8 34 73.5
TPR.G27727 Trifolium pratense HOM05D005416 ORTHO05D007956 1.3e-06 58.9 265 25.7


User provided reference genes

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