Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c8_19660 Physcomitrium patens HOM05D003633 ORTHO05D004245 8.7e-51 203.4 104 100.0
Pp3c24_13420 Physcomitrium patens HOM05D003633 ORTHO05D004245 4.5e-15 84.7 50 82.0
Mapoly0048s0100 Marchantia polymorpha HOM05D003633 ORTHO05D004245 2.5e-13 79.0 52 73.1
MBI05_g07506_MAGBIO Magnolia biondii HOM05D003633 ORTHO05D004245 7.2e-13 77.4 64 60.9
AagrBONN_evm.TU.Sc2ySwM_228.640 Anthoceros agrestis HOM05D003633 ORTHO05D004245 1.6e-12 76.3 50 72.0
Cc01_g08350 Coffea canephora HOM05D003633 ORTHO05D004245 3.6e-12 75.1 50 68.0
ATR0618G336 Amborella trichopoda HOM05D003633 ORTHO05D004245 7.9e-12 73.9 50 70.0
PSO017G3356 Papaver somniferum HOM05D003633 ORTHO05D004245 1.4e-11 73.2 50 66.0
PSO170G6842 Papaver somniferum HOM05D003633 ORTHO05D004245 1.4e-11 73.2 50 66.0
vmacro21588 Vaccinium macrocarpon HOM05D003633 ORTHO05D004245 1.4e-11 73.2 50 70.0
CSS0028100 Camellia sinensis var. sinensis HOM05D003633 ORTHO05D004245 1.8e-11 72.8 50 68.0
HanXRQChr06g0181531 Helianthus annuus HOM05D003633 ORTHO05D004245 3.0e-11 72.0 50 66.0
Phvul.009G196800 Phaseolus vulgaris HOM05D003633 ORTHO05D004245 3.0e-11 72.0 50 66.0
Atru.chr3.3038 Acer truncatum HOM05D003633 ORTHO05D004245 3.9e-11 71.6 50 68.0
MELO3C014687.2 Cucumis melo HOM05D003633 ORTHO05D004245 3.9e-11 71.6 50 66.0
CsaV3_4G023280 Cucumis sativus L. HOM05D003633 ORTHO05D004245 3.9e-11 71.6 50 66.0
THA.LOC104800499 Tarenaya hassleriana HOM05D003633 ORTHO05D004245 3.9e-11 71.6 50 66.0
TAR636G3505 Trochodendron aralioides HOM05D003633 ORTHO05D004245 3.9e-11 71.6 50 66.0
Dinv32833 Davidia involucrata HOM05D003633 ORTHO05D004245 5.1e-11 71.2 50 66.0
Lalb_Chr04g0249821 Lupinus albus HOM05D003633 ORTHO05D004245 5.1e-11 71.2 50 66.0
CDE06G2316 Ceratophyllum demersum HOM05D003633 ORTHO05D004245 6.7e-11 70.9 50 66.0
CBR_g39806 Chara braunii HOM05D003633 ORTHO05D004245 6.7e-11 70.9 50 68.0
Eucgr.J00601 Eucalyptus grandis HOM05D003633 ORTHO05D004245 6.7e-11 70.9 50 64.0
HPP92_021530 Vanilla planifolia HOM05D003633 ORTHO05D004245 6.7e-11 70.9 50 66.0
ClCG02G024050 Citrullus lanatus HOM05D003633 ORTHO05D004245 8.8e-11 70.5 50 66.0
FAN04G2246 Fragaria x ananassa HOM05D003633 ORTHO05D004245 8.8e-11 70.5 50 66.0
FAN18G2517 Fragaria x ananassa HOM05D003633 ORTHO05D004245 8.8e-11 70.5 50 66.0
FAN18G4241 Fragaria x ananassa HOM05D003633 ORTHO05D004245 8.8e-11 70.5 50 66.0
Manes.06G005500 Manihot esculenta HOM05D003633 ORTHO05D004245 8.8e-11 70.5 50 64.0
PGR119G0283 Punica granatum HOM05D003633 ORTHO05D004245 8.8e-11 70.5 50 64.0
Rhsim01G0197900 Rhododendron simsii HOM05D003633 ORTHO05D004245 8.8e-11 70.5 50 66.0
RcHm_v2.0_Chr7g0186721 Rosa chinensis HOM05D003633 ORTHO05D004245 8.8e-11 70.5 50 66.0
Sed0007253 Sechium edule HOM05D003633 ORTHO05D004245 8.8e-11 70.5 50 64.0
TWI75G0107 Tripterygium wilfordii HOM05D003633 ORTHO05D004245 8.8e-11 70.5 50 66.0
Ciclev10027700m.g Citrus clementina HOM05D003633 ORTHO05D004245 1.1e-10 70.1 50 64.0
Glyma.02G271900 Glycine max HOM05D003633 ORTHO05D004245 1.1e-10 70.1 50 64.0
Glyma.14G044900 Glycine max HOM05D003633 ORTHO05D004245 1.1e-10 70.1 50 64.0
Lj2C854G3 Lonicera japonica HOM05D003633 ORTHO05D004245 1.1e-10 70.1 55 60.0
Potri.009G155200 Populus trichocarpa HOM05D003633 ORTHO05D004245 1.1e-10 70.1 50 64.0
Sabra09G0121700 Salix brachista HOM05D003633 ORTHO05D004245 1.1e-10 70.1 50 64.0
GSVIVG01033181001 Vitis vinifera HOM05D003633 ORTHO05D004245 1.1e-10 70.1 50 64.0
EL10Ac7g16251 Beta vulgaris HOM05D003633 ORTHO05D004245 1.5e-10 69.7 50 66.0
Duzib170G1043 Durio zibethinus HOM05D003633 ORTHO05D004245 1.5e-10 69.7 50 64.0
SalBow3G2138 Salvia bowleyana HOM05D003633 ORTHO05D004245 1.5e-10 69.7 50 62.0
Thecc.09G266900 Theobroma cacao HOM05D003633 ORTHO05D004245 1.5e-10 69.7 50 64.0
CiPaw.13G125200 Carya illinoinensis HOM05D003633 ORTHO05D004245 2.0e-10 69.3 50 62.0
Gohir.A05G076900 Gossypium hirsutum HOM05D003633 ORTHO05D004245 2.0e-10 69.3 50 64.0
Gohir.D05G079700 Gossypium hirsutum HOM05D003633 ORTHO05D004245 2.0e-10 69.3 50 64.0
Gorai.009G081300 Gossypium raimondii HOM05D003633 ORTHO05D004245 2.0e-10 69.3 50 64.0
Lj2A874G36 Lonicera japonica HOM05D003633 ORTHO05D004245 2.0e-10 69.3 50 62.0
LjContig00564g0017285 Lotus japonicus HOM05D003633 ORTHO05D004245 2.0e-10 69.3 48 66.7
Nn2g11908 Nelumbo nucifera HOM05D003633 ORTHO05D004245 2.0e-10 69.3 50 64.0
ECA238G1454 Erigeron canadensis HOM05D003633 ORTHO05D004245 2.5e-10 68.9 50 62.0
Aqoxy7G01992 Aquilegia oxysepala HOM05D003633 ORTHO05D004245 3.3e-10 68.6 50 66.0
Medtr1g051825 Medicago truncatula HOM05D003633 ORTHO05D004245 3.3e-10 68.6 50 64.0
Oeu058179.1 Olea europaea HOM05D003633 ORTHO05D004245 3.3e-10 68.6 50 64.0
RcHm_v2.0_Chr1g0362081 Rosa chinensis HOM05D003633 ORTHO05D004245 3.3e-10 68.6 49 65.3
AUR62001588 Chenopodium quinoa HOM05D003633 ORTHO05D004245 4.3e-10 68.2 50 64.0
AUR62020192 Chenopodium quinoa HOM05D003633 ORTHO05D004245 4.3e-10 68.2 50 64.0
COL.COLO4_25352 Corchorus olitorius HOM05D003633 ORTHO05D004245 4.3e-10 68.2 48 66.7
DCAR_022907 Daucus carota HOM05D003633 ORTHO05D004245 4.3e-10 68.2 50 60.0
Nitab4.5_0003359g0030 Nicotiana tabacum HOM05D003633 ORTHO05D004245 4.3e-10 68.2 50 62.0
Actinidia06352 Actinidia chinensis HOM05D003633 ORTHO05D004245 7.4e-10 67.4 50 60.0
Actinidia22465 Actinidia chinensis HOM05D003633 ORTHO05D004245 7.4e-10 67.4 50 60.0
Peaxi162Scf00355g00113 Petunia axillaris HOM05D003633 ORTHO05D004245 7.4e-10 67.4 51 60.8
unitig_27.g25129 Utricularia gibba HOM05D003633 ORTHO05D004245 7.4e-10 67.4 50 60.0
AL4G20920 Arabidopsis lyrata HOM05D003633 ORTHO05D004245 9.7e-10 67.0 50 66.0
Aa31LG5G8590 Aethionema arabicum HOM05D003633 ORTHO05D004245 1.3e-09 66.6 50 64.0
Hund18817 Selenicereus undatus HOM05D003633 ORTHO05D004245 1.3e-09 66.6 64 51.6
TPR.G1293 Trifolium pratense HOM05D003633 ORTHO05D004245 1.3e-09 66.6 59 55.9
HPP92_021489 Vanilla planifolia HOM05D003633 ORTHO05D004245 1.3e-09 66.6 47 66.0
Migut.N02426 Erythranthe guttata HOM05D003633 ORTHO05D004245 1.7e-09 66.2 50 60.0
Potri.009G154550 Populus trichocarpa HOM05D003633 ORTHO05D004245 1.7e-09 66.2 49 63.3
Sc12g0000470 Simmondsia chinensis HOM05D003633 ORTHO05D004245 1.7e-09 66.2 50 64.0
SGA_v2.0_scaffold79G25491 Striga asiatica HOM05D003633 ORTHO05D004245 1.7e-09 66.2 50 58.0
Carub.0004s0770 Capsella rubella HOM05D003633 ORTHO05D004245 2.2e-09 65.9 50 64.0
Cpa.g.sc103.58 Carica papaya HOM05D003633 ORTHO05D004245 2.2e-09 65.9 48 66.7
MD11G1177700 Malus domestica HOM05D003633 ORTHO05D004245 2.2e-09 65.9 50 60.0
Prupe.6G149900 Prunus persica HOM05D003633 ORTHO05D004245 2.2e-09 65.9 50 60.0
AT2G27170 Arabidopsis thaliana HOM05D003633 ORTHO05D004245 2.8e-09 65.5 50 64.0
Migut.N02425 Erythranthe guttata HOM05D003633 ORTHO05D004245 2.8e-09 65.5 49 61.2
CARHR119550 Cardamine hirsuta HOM05D003633 ORTHO05D004245 3.7e-09 65.1 50 64.0
Os02g0133300 Oryza sativa ssp. japonica HOM05D003633 ORTHO05D004245 4.8e-09 64.7 50 56.0
MD03G1161700 Malus domestica HOM05D003633 ORTHO05D004245 6.3e-09 64.3 50 60.0
Zm00001eb297550 Zea mays HOM05D003633 ORTHO05D004245 6.3e-09 64.3 50 56.0
LjContig00564g0013149 Lotus japonicus HOM05D003633 ORTHO05D004245 8.2e-09 63.9 50 60.0
Nitab4.5_0000200g0070 Nicotiana tabacum HOM05D003633 ORTHO05D004245 1.1e-08 63.5 47 63.8
Lsat_1_v5_gn_6_106240 Lactuca sativa HOM05D003633 ORTHO05D004245 1.4e-08 63.2 50 58.0
arahy.Tifrunner.gnm1.ann1.10ENSP Arachis hypogaea HOM05D003633 ORTHO05D004245 1.8e-08 62.8 50 60.0
arahy.Tifrunner.gnm1.ann1.HKS14U Arachis hypogaea HOM05D003633 ORTHO05D004245 1.8e-08 62.8 50 60.0
Thhalv10001887m.g Eutrema salsugineum HOM05D003633 ORTHO05D004245 1.8e-08 62.8 51 64.7
Solyc06g073780.4 Solanum lycopersicum HOM05D003633 ORTHO05D004245 1.8e-08 62.8 48 58.3
Sopen06g030170 Solanum pennellii HOM05D003633 ORTHO05D004245 1.8e-08 62.8 48 58.3
PGSC0003DMG400005912 Solanum tuberosum HOM05D003633 ORTHO05D004245 1.8e-08 62.8 48 58.3
BcaC02g08276 Brassica carinata HOM05D003633 ORTHO05D004245 3.1e-08 62.0 43 69.8
A04p20650 Brassica napus HOM05D003633 ORTHO05D004245 3.1e-08 62.0 43 69.8
C04p56430 Brassica napus HOM05D003633 ORTHO05D004245 3.1e-08 62.0 43 69.8
BolC4t27174H Brassica oleracea HOM05D003633 ORTHO05D004245 3.1e-08 62.0 43 69.8
BraA04t17638Z Brassica rapa HOM05D003633 ORTHO05D004245 3.1e-08 62.0 43 69.8
CANSAT54G1723 Cannabis sativa HOM05D003633 ORTHO05D004245 3.1e-08 62.0 50 60.0
Lsat_1_v5_gn_2_27520 Lactuca sativa HOM05D003633 ORTHO05D004245 3.1e-08 62.0 40 70.0
VMungo1309G0828 Vigna mungo HOM05D003633 ORTHO05D004245 3.1e-08 62.0 83 48.2
arahy.Tifrunner.gnm1.ann1.65YTHF Arachis hypogaea HOM05D003633 ORTHO05D004245 4.1e-08 61.6 40 72.5
Sp4g09970 Schrenkiella parvula HOM05D003633 ORTHO05D004245 5.3e-08 61.2 43 69.8
BcaB06g28118 Brassica carinata HOM05D003633 ORTHO05D004245 9.1e-08 60.5 43 67.4
arahy.Tifrunner.gnm1.ann1.Z8K404 Arachis hypogaea HOM05D003633 ORTHO05D004245 1.5e-07 59.7 44 65.9
arahy.Tifrunner.gnm1.ann1.KL7BWI Arachis hypogaea HOM05D003633 ORTHO05D004245 3.4e-07 58.5 40 70.0
Lj2C868T4 Lonicera japonica HOM05D003633 ORTHO05D004245 5.9e-07 57.8 50 54.0
Lj2C853G1 Lonicera japonica HOM05D003633 ORTHO05D004245 7.7e-07 57.4 50 54.0
Lj2C849G3 Lonicera japonica HOM05D003633 ORTHO05D004245 1.0e-06 57.0 50 52.0
BcaB01g03052 Brassica carinata HOM05D003633 ORTHO05D004245 1.3e-06 56.6 43 60.5
A03p26730 Brassica napus HOM05D003633 ORTHO05D004245 1.3e-06 56.6 43 62.8
Thhalv10023124m.g Eutrema salsugineum HOM05D003633 ORTHO05D004245 1.3e-06 56.6 42 64.3
Lj2C873T5 Lonicera japonica HOM05D003633 ORTHO05D004245 1.3e-06 56.6 50 54.0
PRCOL_00007015 Prasinoderma coloniale HOM05D003633 ORTHO05D004245 2.2e-06 55.8 39 64.1
C03p32030 Brassica napus HOM05D003633 ORTHO05D004245 2.9e-06 55.5 43 62.8
BcaC01g04925 Brassica carinata HOM05D003633 ORTHO05D004245 3.8e-06 55.1 43 60.5
BraA03t11884Z Brassica rapa HOM05D003633 ORTHO05D004245 3.8e-06 55.1 43 60.5
BolC3t15547H Brassica oleracea HOM05D003633 ORTHO05D004245 5.0e-06 54.7 43 60.5


User provided reference genes

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