Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c8_17060 Physcomitrium patens HOM05D004082 ORTHO05D004729 0.0e+00 1898.6 894 100.0
Pp3c15_10050 Physcomitrium patens HOM05D004082 ORTHO05D004729 0.0e+00 1241.5 891 65.9
Mapoly0034s0073 Marchantia polymorpha HOM05D004082 ORTHO05D004729 3.1e-306 1055.0 930 55.5
SMO367G0677 Selaginella moellendorffii HOM05D004082 ORTHO05D004729 2.2e-304 1048.9 920 56.2
A06p05830 Brassica napus HOM05D004082 ORTHO05D004729 1.6e-294 1016.1 936 54.3
AL1G19440 Arabidopsis lyrata HOM05D004082 ORTHO05D004729 3.0e-293 1011.9 941 53.9
AT1G09010 Arabidopsis thaliana HOM05D004082 ORTHO05D004729 3.9e-293 1011.5 936 53.6
Aa31sc136G30 Aethionema arabicum HOM05D004082 ORTHO05D004729 5.1e-293 1011.1 933 55.0
Sp1g07620 Schrenkiella parvula HOM05D004082 ORTHO05D004729 6.7e-293 1010.7 936 54.1
C05p07040 Brassica napus HOM05D004082 ORTHO05D004729 8.8e-293 1010.4 937 54.2
BolC5t29459H Brassica oleracea HOM05D004082 ORTHO05D004729 8.8e-293 1010.4 937 54.2
Carub.0001s0833 Capsella rubella HOM05D004082 ORTHO05D004729 1.5e-292 1009.6 936 54.2
A08p34860 Brassica napus HOM05D004082 ORTHO05D004729 9.7e-292 1006.9 933 53.8
CARHR008900 Cardamine hirsuta HOM05D004082 ORTHO05D004729 2.8e-291 1005.4 933 53.9
EL10Ac4g09354 Beta vulgaris HOM05D004082 ORTHO05D004729 1.8e-290 1002.7 958 53.2
BraA08t35397Z Brassica rapa HOM05D004082 ORTHO05D004729 4.1e-290 1001.5 933 53.5
Duzib177G1172 Durio zibethinus HOM05D004082 ORTHO05D004729 4.1e-290 1001.5 963 53.1
Lj1g0013013 Lotus japonicus HOM05D004082 ORTHO05D004729 6.9e-290 1000.7 978 52.1
BolC8t48880H Brassica oleracea HOM05D004082 ORTHO05D004729 1.2e-289 1000.0 925 53.9
CiPaw.07G018100 Carya illinoinensis HOM05D004082 ORTHO05D004729 2.0e-289 999.2 971 52.7
SGA_v2.0_scaffold81G26069 Striga asiatica HOM05D004082 ORTHO05D004729 3.4e-289 998.4 959 53.0
Medtr7g113570 Medicago truncatula HOM05D004082 ORTHO05D004729 5.9e-289 997.7 953 52.4
THA.LOC104805875 Tarenaya hassleriana HOM05D004082 ORTHO05D004729 1.7e-288 996.1 955 53.0
BcaB07g34118 Brassica carinata HOM05D004082 ORTHO05D004729 2.9e-288 995.3 937 54.1
C08p12400 Brassica napus HOM05D004082 ORTHO05D004729 2.9e-288 995.3 925 53.8
GSVIVG01000073001 Vitis vinifera HOM05D004082 ORTHO05D004729 2.9e-288 995.3 941 54.3
PGSC0003DMG401024737 Solanum tuberosum HOM05D004082 ORTHO05D004729 3.8e-288 995.0 970 52.8
MD12G1218800 Malus domestica HOM05D004082 ORTHO05D004729 1.1e-287 993.4 963 53.2
Haze_04194 Corylus avellana HOM05D004082 ORTHO05D004729 2.5e-287 992.3 963 52.6
Manes.08G120500 Manihot esculenta HOM05D004082 ORTHO05D004729 2.5e-287 992.3 964 52.9
Duzib106G1815 Durio zibethinus HOM05D004082 ORTHO05D004729 5.5e-287 991.1 964 52.6
Migut.N02007 Erythranthe guttata HOM05D004082 ORTHO05D004729 5.5e-287 991.1 948 53.3
Peaxi162Scf00037g00423 Petunia axillaris HOM05D004082 ORTHO05D004729 5.5e-287 991.1 961 53.0
Aqoxy2G03354 Aquilegia oxysepala HOM05D004082 ORTHO05D004729 7.2e-287 990.7 964 52.8
arahy.Tifrunner.gnm1.ann1.0R76NZ Arachis hypogaea HOM05D004082 ORTHO05D004729 7.2e-287 990.7 989 51.5
Sopen01g042650 Solanum pennellii HOM05D004082 ORTHO05D004729 7.2e-287 990.7 971 52.4
Prupe.6G325300 Prunus persica HOM05D004082 ORTHO05D004729 2.7e-286 988.8 964 53.0
Sed0016495 Sechium edule HOM05D004082 ORTHO05D004729 3.6e-286 988.4 966 52.4
MELO3C015324.2 Cucumis melo HOM05D004082 ORTHO05D004729 4.7e-286 988.0 978 52.1
Gorai.007G297200 Gossypium raimondii HOM05D004082 ORTHO05D004729 1.0e-285 986.9 960 52.6
MSTRG.27997 Avicennia marina HOM05D004082 ORTHO05D004729 1.4e-285 986.5 978 52.2
Solyc01g099090.3 Solanum lycopersicum HOM05D004082 ORTHO05D004729 1.4e-285 986.5 971 52.2
Aqoxy5G00500 Aquilegia oxysepala HOM05D004082 ORTHO05D004729 1.8e-285 986.1 960 52.7
Thhalv10006730m.g Eutrema salsugineum HOM05D004082 ORTHO05D004729 2.3e-285 985.7 936 53.4
Phvul.006G092100 Phaseolus vulgaris HOM05D004082 ORTHO05D004729 3.9e-285 984.9 975 51.4
TAR636G3250 Trochodendron aralioides HOM05D004082 ORTHO05D004729 6.7e-285 984.2 961 51.9
Gohir.D13G110800 Gossypium hirsutum HOM05D004082 ORTHO05D004729 1.1e-284 983.4 972 52.1
Glyma.19G235500 Glycine max HOM05D004082 ORTHO05D004729 4.4e-284 981.5 967 51.7
arahy.Tifrunner.gnm1.ann1.MMBS5J Arachis hypogaea HOM05D004082 ORTHO05D004729 7.4e-284 980.7 983 51.4
SalBow3G1583 Salvia bowleyana HOM05D004082 ORTHO05D004729 7.4e-284 980.7 946 52.1
Sc16g0008480 Simmondsia chinensis HOM05D004082 ORTHO05D004729 7.4e-284 980.7 968 52.3
QL03p007071 Quercus lobata HOM05D004082 ORTHO05D004729 9.7e-284 980.3 963 52.2
Lj5g0001168 Lotus japonicus HOM05D004082 ORTHO05D004729 1.7e-283 979.5 963 52.8
TPR.G33180 Trifolium pratense HOM05D004082 ORTHO05D004729 1.7e-283 979.5 962 51.5
Glyma.10G154400 Glycine max HOM05D004082 ORTHO05D004729 2.8e-283 978.8 965 51.7
Phvul.007G180100 Phaseolus vulgaris HOM05D004082 ORTHO05D004729 3.7e-283 978.4 962 52.1
CsaV3_1G038970 Cucumis sativus L. HOM05D004082 ORTHO05D004729 6.3e-283 977.6 977 51.9
Hund07072 Selenicereus undatus HOM05D004082 ORTHO05D004729 8.2e-283 977.2 960 51.4
VMungo0540G1737 Vigna mungo HOM05D004082 ORTHO05D004729 8.2e-283 977.2 975 50.9
CANSAT54G2367 Cannabis sativa HOM05D004082 ORTHO05D004729 1.4e-282 976.5 967 51.9
Potri.013G021200 Populus trichocarpa HOM05D004082 ORTHO05D004729 1.8e-282 976.1 963 52.3
arahy.Tifrunner.gnm1.ann1.7P2G6T Arachis hypogaea HOM05D004082 ORTHO05D004729 2.4e-282 975.7 956 53.0
TWI56G0720 Tripterygium wilfordii HOM05D004082 ORTHO05D004729 2.4e-282 975.7 967 52.2
Ah.06g189390 Amaranthus hybridus HOM05D004082 ORTHO05D004729 3.1e-282 975.3 970 51.1
Glyma.20G233900 Glycine max HOM05D004082 ORTHO05D004729 3.1e-282 975.3 965 51.3
Glyma.03G238100 Glycine max HOM05D004082 ORTHO05D004729 4.1e-282 974.9 987 51.2
Oeu038297.1 Olea europaea HOM05D004082 ORTHO05D004729 5.3e-282 974.5 975 51.7
Eucgr.H04490 Eucalyptus grandis HOM05D004082 ORTHO05D004729 9.1e-282 973.8 973 51.5
Sabra13G0023600 Salix brachista HOM05D004082 ORTHO05D004729 2.0e-281 972.6 964 52.7
TPR.G6044 Trifolium pratense HOM05D004082 ORTHO05D004729 3.5e-281 971.8 970 51.9
Ciclev10000150m.g Citrus clementina HOM05D004082 ORTHO05D004729 4.5e-281 971.5 977 51.2
DCAR_022172 Daucus carota HOM05D004082 ORTHO05D004729 4.5e-281 971.5 973 51.2
VMungo0720G1572 Vigna mungo HOM05D004082 ORTHO05D004729 5.9e-281 971.1 963 51.7
Dinv40289 Davidia involucrata HOM05D004082 ORTHO05D004729 7.7e-281 970.7 947 52.3
Psat3g011080 Pisum sativum HOM05D004082 ORTHO05D004729 1.0e-280 970.3 961 51.7
Thecc.05G302900 Theobroma cacao HOM05D004082 ORTHO05D004729 1.3e-280 969.9 964 52.6
Lj5C472G3 Lonicera japonica HOM05D004082 ORTHO05D004729 2.2e-280 969.1 975 50.9
Zm00001eb287240 Zea mays HOM05D004082 ORTHO05D004729 2.2e-280 969.1 967 51.2
CSS0005144 Camellia sinensis var. sinensis HOM05D004082 ORTHO05D004729 2.9e-280 968.8 963 51.9
Cc02_g33390 Coffea canephora HOM05D004082 ORTHO05D004729 2.9e-280 968.8 972 51.0
Lj5C530G2 Lonicera japonica HOM05D004082 ORTHO05D004729 6.5e-280 967.6 969 51.3
Psat6g151160 Pisum sativum HOM05D004082 ORTHO05D004729 1.5e-279 966.5 968 52.0
PGR031G3794 Punica granatum HOM05D004082 ORTHO05D004729 1.9e-279 966.1 968 52.0
HPP92_001021 Vanilla planifolia HOM05D004082 ORTHO05D004729 2.5e-279 965.7 938 52.6
Lalb_Chr18g0045631 Lupinus albus HOM05D004082 ORTHO05D004729 1.2e-278 963.4 954 52.0
AUR62000827 Chenopodium quinoa HOM05D004082 ORTHO05D004729 1.6e-278 963.0 965 51.4
CAN.G1034.45 Capsicum annuum HOM05D004082 ORTHO05D004729 4.7e-278 961.4 969 51.7
Cpa.g.sc48.57 Carica papaya HOM05D004082 ORTHO05D004729 6.1e-278 961.1 967 50.6
Os05g0391500 Oryza sativa ssp. japonica HOM05D004082 ORTHO05D004729 6.1e-278 961.1 962 51.0
PSO832G1048 Papaver somniferum HOM05D004082 ORTHO05D004729 8.0e-278 960.7 956 52.2
FAN05G3196 Fragaria x ananassa HOM05D004082 ORTHO05D004729 1.4e-277 959.9 975 51.0
FvH4_6g05900 Fragaria vesca HOM05D004082 ORTHO05D004729 1.8e-277 959.5 969 50.7
ECA236G4884 Erigeron canadensis HOM05D004082 ORTHO05D004729 3.0e-277 958.7 970 51.8
Ca_10110_v3 Cicer arietinum L. HOM05D004082 ORTHO05D004729 6.7e-277 957.6 963 51.3
Medtr1g082890 Medicago truncatula HOM05D004082 ORTHO05D004729 6.7e-277 957.6 961 51.2
RcHm_v2.0_Chr3g0454891 Rosa chinensis HOM05D004082 ORTHO05D004729 1.1e-276 956.8 964 51.0
arahy.Tifrunner.gnm1.ann1.DUKX6J Arachis hypogaea HOM05D004082 ORTHO05D004729 2.6e-276 955.7 956 52.3
FAN05G5148 Fragaria x ananassa HOM05D004082 ORTHO05D004729 2.6e-276 955.7 975 51.1
Lalb_Chr02g0148261 Lupinus albus HOM05D004082 ORTHO05D004729 3.3e-276 955.3 972 51.4
ClCG03G016970 Citrullus lanatus HOM05D004082 ORTHO05D004729 9.7e-276 953.7 977 50.5
HanXRQChr02g0046191 Helianthus annuus HOM05D004082 ORTHO05D004729 1.3e-275 953.4 963 51.1
FAN14G3006 Fragaria x ananassa HOM05D004082 ORTHO05D004729 8.2e-275 950.7 954 51.2
Prupe.6G325400 Prunus persica HOM05D004082 ORTHO05D004729 8.2e-275 950.7 962 50.7
AUR62005147 Chenopodium quinoa HOM05D004082 ORTHO05D004729 7.0e-274 947.6 963 50.8
DCAR_003333 Daucus carota HOM05D004082 ORTHO05D004729 4.5e-273 944.9 968 50.6
BcaC07g38468 Brassica carinata HOM05D004082 ORTHO05D004729 2.2e-272 942.6 924 51.9
MD12G1218900 Malus domestica HOM05D004082 ORTHO05D004729 2.5e-271 939.1 963 50.6
TWI56G1006 Tripterygium wilfordii HOM05D004082 ORTHO05D004729 9.4e-271 937.2 976 50.1
AagrBONN_evm.TU.Sc2ySwM_368.1060 Anthoceros agrestis HOM05D004082 ORTHO05D004729 2.7e-270 935.6 937 51.0
Lsat_1_v5_gn_9_86081 Lactuca sativa HOM05D004082 ORTHO05D004729 4.7e-270 934.9 971 50.1
Migut.B01033 Erythranthe guttata HOM05D004082 ORTHO05D004729 1.0e-269 933.7 947 50.5
arahy.Tifrunner.gnm1.ann1.HF1TD9 Arachis hypogaea HOM05D004082 ORTHO05D004729 3.0e-269 932.2 769 58.6
unitig_52.g17387 Utricularia gibba HOM05D004082 ORTHO05D004729 5.7e-268 927.9 968 49.2
FAN09G0543 Fragaria x ananassa HOM05D004082 ORTHO05D004729 7.5e-268 927.5 920 51.5
Nn1g02247 Nelumbo nucifera HOM05D004082 ORTHO05D004729 2.4e-266 922.5 962 50.3
RhsimUnG0226200 Rhododendron simsii HOM05D004082 ORTHO05D004729 4.1e-266 921.8 942 51.3
BcaC07g38465 Brassica carinata HOM05D004082 ORTHO05D004729 7.0e-266 921.0 937 51.2
BcaC05g24752 Brassica carinata HOM05D004082 ORTHO05D004729 1.0e-261 907.1 937 50.6
Nitab4.5_0000137g0200 Nicotiana tabacum HOM05D004082 ORTHO05D004729 3.0e-261 905.6 947 50.5
Hund21813 Selenicereus undatus HOM05D004082 ORTHO05D004729 8.8e-261 904.0 984 48.8
vmacro05017 Vaccinium macrocarpon HOM05D004082 ORTHO05D004729 4.9e-259 898.3 959 49.4
SHI18140 Sapria himalayana HOM05D004082 ORTHO05D004729 2.3e-256 889.4 997 47.4
Gohir.A11G265200 Gossypium hirsutum HOM05D004082 ORTHO05D004729 3.8e-256 888.6 864 52.4
BraA06t23793Z Brassica rapa HOM05D004082 ORTHO05D004729 2.1e-254 882.9 815 53.9
CBR_g23107 Chara braunii HOM05D004082 ORTHO05D004729 2.2e-251 872.8 837 52.4
vmacro22529 Vaccinium macrocarpon HOM05D004082 ORTHO05D004729 3.7e-251 872.1 872 51.7
Gohir.D11G275400 Gossypium hirsutum HOM05D004082 ORTHO05D004729 5.0e-248 861.7 846 52.2
Gohir.A13G107600 Gossypium hirsutum HOM05D004082 ORTHO05D004729 3.4e-244 849.0 844 51.7
COL.COLO4_13463 Corchorus olitorius HOM05D004082 ORTHO05D004729 4.4e-244 848.6 995 47.5
ATR0626G266 Amborella trichopoda HOM05D004082 ORTHO05D004729 3.6e-238 828.9 764 54.8
Ca_09358_v3 Cicer arietinum L. HOM05D004082 ORTHO05D004729 2.4e-218 763.1 780 50.8
Migut.O00505 Erythranthe guttata HOM05D004082 ORTHO05D004729 1.3e-214 750.7 755 51.4
Gorai.013G124100 Gossypium raimondii HOM05D004082 ORTHO05D004729 1.6e-206 723.8 763 49.7
CDE05G1313 Ceratophyllum demersum HOM05D004082 ORTHO05D004729 9.0e-197 691.4 666 52.6
Lj9A80G16 Lonicera japonica HOM05D004082 ORTHO05D004729 8.5e-179 631.7 635 51.3
Nitab4.5_0003227g0030 Nicotiana tabacum HOM05D004082 ORTHO05D004729 2.0e-140 504.2 404 59.2
Nitab4.5_0003227g0010 Nicotiana tabacum HOM05D004082 ORTHO05D004729 4.7e-137 493.0 556 48.7
MBI17_g12862_MAGBIO Magnolia biondii HOM05D004082 ORTHO05D004729 2.8e-81 307.8 279 53.4
Atru.chr2.402 Acer truncatum HOM05D004082 ORTHO05D004729 9.4e-69 266.2 209 60.3
QL03p006635 Quercus lobata HOM05D004082 ORTHO05D004729 5.1e-67 260.4 341 42.2
SEGI_31510 Sequoiadendron giganteum HOM05D004082 ORTHO05D004729 5.1e-67 260.4 203 59.1
PRCOL_00002375 Prasinoderma coloniale HOM05D004082 ORTHO05D004729 5.7e-66 256.9 655 31.0
Gorai.013G124200 Gossypium raimondii HOM05D004082 ORTHO05D004729 3.2e-61 241.1 192 60.4
SEGI_00836 Sequoiadendron giganteum HOM05D004082 ORTHO05D004729 3.3e-58 231.1 160 67.5
QL03p006592 Quercus lobata HOM05D004082 ORTHO05D004729 3.4e-55 221.1 215 52.6
Cfa025543 Carpinus fangiana HOM05D004082 ORTHO05D004729 1.6e-47 195.7 727 23.9
Lj9A80G18 Lonicera japonica HOM05D004082 ORTHO05D004729 1.1e-45 189.5 208 46.2
CAN.G623.33 Capsicum annuum HOM05D004082 ORTHO05D004729 5.5e-45 187.2 335 39.1
Atru.chr1.89 Acer truncatum HOM05D004082 ORTHO05D004729 7.2e-45 186.8 143 60.8
CDE05G2291 Ceratophyllum demersum HOM05D004082 ORTHO05D004729 2.4e-40 171.8 158 51.3
QL03p006553 Quercus lobata HOM05D004082 ORTHO05D004729 1.4e-32 146.0 380 31.1
arahy.Tifrunner.gnm1.ann1.3W7GTE Arachis hypogaea HOM05D004082 ORTHO05D004729 1.3e-30 139.4 88 70.5
Atru.chr1.88 Acer truncatum HOM05D004082 ORTHO05D004729 5.2e-27 127.5 400 28.8
CBR_g49561 Chara braunii HOM05D000019 ORTHO05D000353 1.0e-22 113.2 186 36.0
SGA_v2.0_scaffold54G19617 Striga asiatica HOM05D004082 ORTHO05D004729 2.9e-22 111.7 146 43.8
CDE05G1624 Ceratophyllum demersum HOM05D004082 ORTHO05D004729 4.3e-21 107.8 84 60.7
Cfa024522 Carpinus fangiana HOM05D004082 ORTHO05D004729 2.0e-18 99.0 309 28.5
CAN.G623.34 Capsicum annuum HOM05D004082 ORTHO05D004729 1.2e-12 79.7 59 59.3
Lj9A80T26 Lonicera japonica HOM05D004082 ORTHO05D004729 7.5e-10 70.5 93 36.6
CAN.G22.21 Capsicum annuum HOM05D004082 ORTHO05D004729 1.3e-09 69.7 144 33.3
CAN.G2092.2 Capsicum annuum HOM05D004082 ORTHO05D004729 5.4e-08 64.3 115 36.5
Cfa026367 Carpinus fangiana HOM05D005112 ORTHO05D123685 7.0e-08 63.9 388 24.2
Atru.chr2.403 Acer truncatum HOM05D004082 ORTHO05D004729 1.6e-07 62.8 86 45.3
VMungo1127G1159 Vigna mungo HOM05D004082 ORTHO05D004729 1.6e-07 62.8 95 37.9
SGA_v2.0_scaffold54G19618 Striga asiatica HOM05D004082 ORTHO05D004729 2.3e-06 58.9 122 33.6
Hund20275 Selenicereus undatus HOM05D004082 ORTHO05D004729 5.1e-06 57.8 42 57.1
ATR0626G076 Amborella trichopoda HOM05D004082 ORTHO05D004729 8.6e-06 57.0 86 38.4


User provided reference genes

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