Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c8_15910 Physcomitrium patens HOM05D004581 ORTHO05D006211 3.1e-162 575.1 292 100.0
Pp3c20_16750 Physcomitrium patens HOM05D004581 ORTHO05D006211 3.5e-105 385.6 272 77.2
Pp3c24_16220 Physcomitrium patens HOM05D004581 ORTHO05D006211 4.5e-105 385.2 264 78.4
Mapoly0001s0406 Marchantia polymorpha HOM05D004581 ORTHO05D006211 1.1e-87 327.4 256 68.0
AagrBONN_evm.TU.Sc2ySwM_344.2102 Anthoceros agrestis HOM05D004581 ORTHO05D006211 9.5e-87 324.3 254 68.5
SMO356G0383 Selaginella moellendorffii HOM05D004581 ORTHO05D006211 8.9e-77 291.2 256 63.3
TAR369G0383 Trochodendron aralioides HOM05D004581 ORTHO05D006211 1.7e-64 250.4 248 55.6
TAR623G0668 Trochodendron aralioides HOM05D004581 ORTHO05D006211 1.7e-64 250.4 247 55.1
ATR0598G264 Amborella trichopoda HOM05D004581 ORTHO05D006211 2.3e-64 250.0 243 56.4
Atru.chr8.1150 Acer truncatum HOM05D004581 ORTHO05D006211 1.1e-63 247.7 250 55.6
PSO384G2020 Papaver somniferum HOM05D004581 ORTHO05D006211 1.6e-62 243.8 248 54.8
Nn7g35977 Nelumbo nucifera HOM05D004581 ORTHO05D006211 2.1e-62 243.4 245 56.3
PSO339G4020 Papaver somniferum HOM05D004581 ORTHO05D006211 2.1e-62 243.4 248 54.8
QL07p024331 Quercus lobata HOM05D004581 ORTHO05D006211 4.7e-62 242.3 254 53.9
Gohir.D04G089200 Gossypium hirsutum HOM05D004581 ORTHO05D006211 6.2e-62 241.9 252 54.4
Gorai.012G099300 Gossypium raimondii HOM05D004581 ORTHO05D006211 6.2e-62 241.9 252 54.4
QL07p024348 Quercus lobata HOM05D004581 ORTHO05D006211 8.1e-62 241.5 250 54.4
QL07p024412 Quercus lobata HOM05D004581 ORTHO05D006211 8.1e-62 241.5 250 54.4
PGR142G1146 Punica granatum HOM05D004581 ORTHO05D006211 1.4e-61 240.7 247 53.8
Sed0021834 Sechium edule HOM05D004581 ORTHO05D006211 1.8e-61 240.4 248 55.2
Potri.016G059900 Populus trichocarpa HOM05D004581 ORTHO05D006211 3.1e-61 239.6 250 53.2
Gohir.A04G057400 Gossypium hirsutum HOM05D004581 ORTHO05D006211 4.0e-61 239.2 252 54.0
Duzib093G1426 Durio zibethinus HOM05D004581 ORTHO05D006211 5.2e-61 238.8 248 53.2
Ciclev10011052m.g Citrus clementina HOM05D004581 ORTHO05D006211 6.8e-61 238.4 249 55.4
COL.COLO4_29354 Corchorus olitorius HOM05D004581 ORTHO05D006211 1.2e-60 237.7 247 55.1
CBR_g7989 Chara braunii HOM05D004581 ORTHO05D006211 1.5e-60 237.3 281 52.0
ClCG04G001070 Citrullus lanatus HOM05D004581 ORTHO05D006211 2.0e-60 236.9 249 54.2
CsaV3_4G031280 Cucumis sativus L. HOM05D004581 ORTHO05D006211 2.6e-60 236.5 249 54.6
Thecc.05G174500 Theobroma cacao HOM05D004581 ORTHO05D006211 2.6e-60 236.5 248 52.4
GSVIVG01033474001 Vitis vinifera HOM05D004581 ORTHO05D006211 3.4e-60 236.1 254 54.3
Haze_20018 Corylus avellana HOM05D004581 ORTHO05D006211 4.4e-60 235.7 246 53.3
Cc06_g15670 Coffea canephora HOM05D004581 ORTHO05D006211 5.8e-60 235.3 257 52.9
MSTRG.19916 Avicennia marina HOM05D004581 ORTHO05D006211 7.5e-60 235.0 251 53.0
MBI19_g17421_MAGBIO Magnolia biondii HOM05D004581 ORTHO05D006211 9.8e-60 234.6 248 52.4
MELO3C009016.2 Cucumis melo HOM05D004581 ORTHO05D006211 1.3e-59 234.2 249 53.8
FAN05G2417 Fragaria x ananassa HOM05D004581 ORTHO05D006211 1.3e-59 234.2 253 53.0
PGSC0003DMG400002716 Solanum tuberosum HOM05D004581 ORTHO05D006211 1.7e-59 233.8 247 53.0
Cfa020147 Carpinus fangiana HOM05D004581 ORTHO05D006211 2.2e-59 233.4 246 52.8
Solyc09g009140.3 Solanum lycopersicum HOM05D004581 ORTHO05D006211 2.2e-59 233.4 247 51.8
FAN14G2436 Fragaria x ananassa HOM05D004581 ORTHO05D006211 2.9e-59 233.0 250 52.4
Sabra16G0062700 Salix brachista HOM05D004581 ORTHO05D006211 2.9e-59 233.0 250 50.8
Eucgr.K01849 Eucalyptus grandis HOM05D004581 ORTHO05D006211 6.4e-59 231.9 245 52.7
DCAR_013660 Daucus carota HOM05D004581 ORTHO05D006211 8.3e-59 231.5 244 52.9
FvH4_6g21970 Fragaria vesca HOM05D004581 ORTHO05D006211 8.3e-59 231.5 250 52.0
Sopen09g003860 Solanum pennellii HOM05D004581 ORTHO05D006211 8.3e-59 231.5 247 51.8
MD14G1054400 Malus domestica HOM05D004581 ORTHO05D006211 1.1e-58 231.1 247 52.2
Manes.09G037300 Manihot esculenta HOM05D004581 ORTHO05D006211 1.4e-58 230.7 253 51.8
Rhsim03G0004600 Rhododendron simsii HOM05D004581 ORTHO05D006211 1.4e-58 230.7 261 51.7
TWI53G1098 Tripterygium wilfordii HOM05D004581 ORTHO05D006211 1.9e-58 230.3 243 52.3
Aa31sc40G20 Aethionema arabicum HOM05D004581 ORTHO05D006211 2.4e-58 229.9 240 52.1
Dinv16368 Davidia involucrata HOM05D004581 ORTHO05D006211 2.4e-58 229.9 248 52.4
Glyma.03G146200 Glycine max HOM05D004581 ORTHO05D006211 2.4e-58 229.9 253 51.0
CSS0001135 Camellia sinensis var. sinensis HOM05D004581 ORTHO05D006211 4.1e-58 229.2 245 54.3
Lju124A23G70 Lonicera japonica HOM05D004581 ORTHO05D006211 4.1e-58 229.2 246 53.7
MD12G1055200 Malus domestica HOM05D004581 ORTHO05D006211 4.1e-58 229.2 250 52.4
Prupe.7G080400 Prunus persica HOM05D004581 ORTHO05D006211 4.1e-58 229.2 246 52.0
FAN02G3358 Fragaria x ananassa HOM05D004581 ORTHO05D006211 5.4e-58 228.8 250 52.8
THA.LOC104809935 Tarenaya hassleriana HOM05D004581 ORTHO05D006211 5.4e-58 228.8 240 53.3
Migut.J01852 Erythranthe guttata HOM05D004581 ORTHO05D006211 9.2e-58 228.0 244 51.2
HanXRQChr01g0010041 Helianthus annuus HOM05D004581 ORTHO05D006211 9.2e-58 228.0 240 54.2
Glyma.19G149500 Glycine max HOM05D004581 ORTHO05D006211 1.2e-57 227.6 253 50.2
RcHm_v2.0_Chr3g0479271 Rosa chinensis HOM05D004581 ORTHO05D006211 1.2e-57 227.6 247 52.2
TWI77G0968 Tripterygium wilfordii HOM05D004581 ORTHO05D006211 1.2e-57 227.6 243 51.0
Sabra06G0149000 Salix brachista HOM05D004581 ORTHO05D006211 1.6e-57 227.3 255 51.0
Lsat_1_v5_gn_5_165321 Lactuca sativa HOM05D004581 ORTHO05D006211 2.1e-57 226.9 240 53.3
CANSAT64G2519 Cannabis sativa HOM05D004581 ORTHO05D006211 2.7e-57 226.5 254 51.2
Potri.006G194200 Populus trichocarpa HOM05D004581 ORTHO05D006211 6.0e-57 225.3 250 50.4
vmacro07891 Vaccinium macrocarpon HOM05D004581 ORTHO05D006211 6.0e-57 225.3 262 50.8
CAN.G824.31 Capsicum annuum HOM05D004581 ORTHO05D006211 1.0e-56 224.6 240 51.7
CiPaw.10G025500 Carya illinoinensis HOM05D004581 ORTHO05D006211 1.0e-56 224.6 252 51.6
AT5G06680 Arabidopsis thaliana HOM05D004581 ORTHO05D006211 1.3e-56 224.2 240 51.2
Thhalv10012676m.g Eutrema salsugineum HOM05D004581 ORTHO05D006211 1.3e-56 224.2 240 51.2
Aqoxy1G00145 Aquilegia oxysepala HOM05D004581 ORTHO05D006211 2.3e-56 223.4 246 51.2
BraA02t04889Z Brassica rapa HOM05D004581 ORTHO05D006211 3.0e-56 223.0 240 52.1
Carub.0006s0556 Capsella rubella HOM05D004581 ORTHO05D006211 3.0e-56 223.0 240 51.2
Phvul.001G144000 Phaseolus vulgaris HOM05D004581 ORTHO05D006211 3.0e-56 223.0 253 49.8
C02p02810 Brassica napus HOM05D004581 ORTHO05D006211 5.1e-56 222.2 240 52.1
BolC2t06246H Brassica oleracea HOM05D004581 ORTHO05D006211 5.1e-56 222.2 240 52.1
AL6G16770 Arabidopsis lyrata HOM05D004581 ORTHO05D006211 6.6e-56 221.9 240 51.2
CARHR206520 Cardamine hirsuta HOM05D004581 ORTHO05D006211 8.6e-56 221.5 240 50.8
Ah.13g075710 Amaranthus hybridus HOM05D004581 ORTHO05D006211 1.1e-55 221.1 247 51.8
SalBow6G0811 Salvia bowleyana HOM05D004581 ORTHO05D006211 1.1e-55 221.1 245 51.0
Sp6g36190 Schrenkiella parvula HOM05D004581 ORTHO05D006211 1.1e-55 221.1 240 50.8
Sc25g0005070 Simmondsia chinensis HOM05D004581 ORTHO05D006211 1.5e-55 220.7 247 50.6
Hund19211 Selenicereus undatus HOM05D004581 ORTHO05D006211 1.9e-55 220.3 241 52.7
TPR.G35787 Trifolium pratense HOM05D004581 ORTHO05D006211 2.5e-55 219.9 247 49.8
EL10Ac2g03990 Beta vulgaris HOM05D004581 ORTHO05D006211 4.3e-55 219.2 249 50.6
Lalb_Chr18g0048011 Lupinus albus HOM05D004581 ORTHO05D006211 9.5e-55 218.0 249 49.4
arahy.Tifrunner.gnm1.ann1.6E61XV Arachis hypogaea HOM05D004581 ORTHO05D006211 1.6e-54 217.2 238 51.3
Medtr7g093560 Medicago truncatula HOM05D004581 ORTHO05D006211 2.8e-54 216.5 247 49.8
arahy.Tifrunner.gnm1.ann1.U2Q4B5 Arachis hypogaea HOM05D004581 ORTHO05D006211 3.6e-54 216.1 238 50.8
BcaB05g21654 Brassica carinata HOM05D004581 ORTHO05D006211 3.6e-54 216.1 240 49.6
Ca_08535_v3 Cicer arietinum L. HOM05D004581 ORTHO05D006211 3.6e-54 216.1 247 49.4
SGA_v2.0_scaffold105G30506 Striga asiatica HOM05D004581 ORTHO05D006211 6.2e-54 215.3 245 50.2
Zm00001eb314430 Zea mays HOM05D004581 ORTHO05D006211 1.8e-53 213.8 241 49.4
unitig_0.g528 Utricularia gibba HOM05D004581 ORTHO05D006211 2.3e-53 213.4 243 49.0
Lj1g0024119 Lotus japonicus HOM05D004581 ORTHO05D006211 3.1e-53 213.0 251 49.8
MCO03G564 Micromonas commoda HOM05D004581 ORTHO05D006211 5.2e-53 212.2 242 51.2
Peaxi162Scf00169g01812 Petunia axillaris HOM05D004581 ORTHO05D006211 2.6e-52 209.9 231 51.1
Os09g0446200 Oryza sativa ssp. japonica HOM05D004581 ORTHO05D006211 5.8e-52 208.8 238 47.5
Psat3g067160 Pisum sativum HOM05D004581 ORTHO05D006211 9.9e-52 208.0 249 47.4
HanXRQChr15g0491321 Helianthus annuus HOM05D004581 ORTHO05D006211 6.0e-49 198.7 236 47.0
SHI31781 Sapria himalayana HOM05D004581 ORTHO05D006211 1.7e-48 197.2 261 44.4
AUR62015335 Chenopodium quinoa HOM05D004581 ORTHO05D006211 6.6e-48 195.3 227 48.9
ECA247G1565 Erigeron canadensis HOM05D004581 ORTHO05D006211 9.6e-47 191.4 242 45.5
ECA248G3562 Erigeron canadensis HOM05D004581 ORTHO05D006211 6.2e-46 188.7 239 47.3
Duzib106G1052 Durio zibethinus HOM05D004581 ORTHO05D006211 3.1e-45 186.4 219 48.9
BraA10t45012Z Brassica rapa HOM05D004581 ORTHO05D006211 1.4e-42 177.6 187 52.4
A10p29710 Brassica napus HOM05D004581 ORTHO05D006211 2.4e-42 176.8 187 52.4
CDE04G2925 Ceratophyllum demersum HOM05D004581 ORTHO05D006211 1.0e-40 171.4 209 48.8
BcaC06g32554 Brassica carinata HOM05D004581 ORTHO05D006211 1.7e-40 170.6 186 50.0
CiPaw.09G028800 Carya illinoinensis HOM05D004581 ORTHO05D006211 1.3e-38 164.5 152 57.9
Nitab4.5_0000663g0140 Nicotiana tabacum HOM05D004581 ORTHO05D006211 3.6e-38 162.9 174 54.6
Lsat_1_v5_gn_9_26020 Lactuca sativa HOM05D004581 ORTHO05D006211 2.4e-37 160.2 265 39.6
Actinidia14375 Actinidia chinensis HOM05D004581 ORTHO05D006211 4.0e-37 159.5 176 52.3
HPP92_028666 Vanilla planifolia HOM05D004581 ORTHO05D006211 5.3e-37 159.1 204 45.1
Actinidia22051 Actinidia chinensis HOM05D004581 ORTHO05D006211 8.4e-35 151.8 223 43.9
Nitab4.5_0006360g0040 Nicotiana tabacum HOM05D004581 ORTHO05D006211 7.1e-34 148.7 167 52.1
VMungo1383G1342 Vigna mungo HOM05D004581 ORTHO05D006211 3.1e-29 133.3 161 49.1
BcaC06g32384 Brassica carinata HOM05D004581 ORTHO05D024356 5.8e-20 102.4 150 43.3
PRCOL_00005400 Prasinoderma coloniale HOM05D004581 ORTHO05D006211 4.2e-18 96.3 236 33.5
Actinidia14374 Actinidia chinensis HOM05D004581 ORTHO05D006211 3.5e-17 93.2 89 59.6
Cfa021858 Carpinus fangiana HOM05D004581 ORTHO05D006211 4.1e-13 79.7 168 36.9
Cre11.g467745 Chlamydomonas reinhardtii HOM05D004581 ORTHO05D006211 5.3e-13 79.3 253 32.0
Cpa.g.sc85.62 Carica papaya HOM05D004581 ORTHO05D006211 5.0e-11 72.8 89 51.7
C09p70080 Brassica napus HOM05D004581 ORTHO05D006211 1.4e-10 71.2 100 44.0
BolC9t59751H Brassica oleracea HOM05D004581 ORTHO05D006211 1.4e-10 71.2 100 44.0
Gorai.010G073500 Gossypium raimondii HOM05D004581 ORTHO05D047643 1.0e-08 65.1 53 58.5
HPP92_028616 Vanilla planifolia HOM05D004581 ORTHO05D024356 1.5e-07 61.2 57 56.1
Zm00001eb065490 Zea mays HOM05D004581 ORTHO05D024356 2.5e-07 60.5 69 46.4
Zm00001eb115360 Zea mays HOM05D004581 ORTHO05D024356 2.5e-07 60.5 69 46.4
Zm00001eb199010 Zea mays HOM05D004581 ORTHO05D024356 2.5e-07 60.5 69 46.4
CDE06G1527 Ceratophyllum demersum HOM05D004581 ORTHO05D006211 7.4e-07 58.9 64 50.0
CBR_g22067 Chara braunii HOM05D004952 ORTHO05D006131 9.7e-07 58.5 151 29.1
Sp5g17550 Schrenkiella parvula HOM05D004148 ORTHO05D004709 1.6e-06 57.8 161 26.7
BcaC01g01775 Brassica carinata HOM05D004148 ORTHO05D004709 2.2e-06 57.4 140 27.1
C03p72000 Brassica napus HOM05D004148 ORTHO05D004709 2.2e-06 57.4 140 27.1
BolC3t19498H Brassica oleracea HOM05D004148 ORTHO05D004709 2.2e-06 57.4 140 27.1
FvH4_2g25810 Fragaria vesca HOM05D000880 ORTHO05D007053 3.7e-06 56.6 150 26.7
FAN20G0148 Fragaria x ananassa HOM05D000880 ORTHO05D007053 3.7e-06 56.6 150 26.7
FAN24G3174 Fragaria x ananassa HOM05D000880 ORTHO05D007053 3.7e-06 56.6 150 26.7
Mapoly0009s0235 Marchantia polymorpha HOM05D000880 ORTHO05D007053 3.7e-06 56.6 145 29.0
Pp3c14_20420 Physcomitrium patens HOM05D000880 ORTHO05D007053 3.7e-06 56.6 135 28.9
AagrBONN_evm.TU.Sc2ySwM_117.410 Anthoceros agrestis HOM05D000880 ORTHO05D007053 4.8e-06 56.2 145 28.3
BcaB01g00875 Brassica carinata HOM05D004148 ORTHO05D004709 4.8e-06 56.2 161 25.5
BcaB02g10777 Brassica carinata HOM05D004148 ORTHO05D004709 4.8e-06 56.2 144 27.8
RcHm_v2.0_Chr6g0294121 Rosa chinensis HOM05D000880 ORTHO05D007053 4.8e-06 56.2 150 26.7
BcaC01g02217 Brassica carinata HOM05D004148 ORTHO05D004709 6.3e-06 55.8 140 27.9
Mapoly0036s0123 Marchantia polymorpha HOM05D005083 ORTHO05D006310 6.3e-06 55.8 134 29.1


User provided reference genes

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