Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c8_11960 Physcomitrium patens HOM05D006647 ORTHO05D008232 1.7e-159 565.8 271 100.0
Pp3c23_8130 Physcomitrium patens HOM05D006647 ORTHO05D008232 1.4e-97 360.1 272 64.3
Mapoly0078s0003 Marchantia polymorpha HOM05D006647 ORTHO05D008232 4.2e-65 252.3 168 67.3
ATR0605G070 Amborella trichopoda HOM05D006647 ORTHO05D008232 2.7e-64 249.6 195 57.9
THA.LOC104801981 Tarenaya hassleriana HOM05D006647 ORTHO05D008232 3.6e-64 249.2 211 57.8
Nitab4.5_0011905g0020 Nicotiana tabacum HOM05D006647 ORTHO05D008232 4.7e-64 248.8 199 61.3
Nitab4.5_0001542g0050 Nicotiana tabacum HOM05D006647 ORTHO05D008232 6.1e-64 248.4 199 61.8
TAR633G0758 Trochodendron aralioides HOM05D006647 ORTHO05D008232 1.0e-63 247.7 210 56.7
AagrBONN_evm.TU.Sc2ySwM_362.154 Anthoceros agrestis HOM05D006647 ORTHO05D008232 1.4e-63 247.3 159 69.8
Dinv09377 Davidia involucrata HOM05D006647 ORTHO05D008232 3.0e-63 246.1 195 59.0
FAN06G3601 Fragaria x ananassa HOM05D006647 ORTHO05D008232 3.0e-63 246.1 217 54.8
FAN10G4164 Fragaria x ananassa HOM05D006647 ORTHO05D008232 3.0e-63 246.1 217 54.8
Peaxi162Scf00428g00819 Petunia axillaris HOM05D006647 ORTHO05D008232 4.0e-63 245.7 199 58.8
FvH4_7g00690 Fragaria vesca HOM05D006647 ORTHO05D008232 5.2e-63 245.4 210 56.7
GSVIVG01032057001 Vitis vinifera HOM05D006647 ORTHO05D008232 5.2e-63 245.4 213 57.3
FAN03G0714 Fragaria x ananassa HOM05D006647 ORTHO05D008232 8.8e-63 244.6 206 56.8
Sc11g0009300 Simmondsia chinensis HOM05D006647 ORTHO05D008232 8.8e-63 244.6 203 60.6
CARHR291410 Cardamine hirsuta HOM05D006647 ORTHO05D008232 1.5e-62 243.8 207 56.0
TWI73G0313 Tripterygium wilfordii HOM05D006647 ORTHO05D008232 1.5e-62 243.8 196 59.2
Cfa010738 Carpinus fangiana HOM05D006647 ORTHO05D008232 3.4e-62 242.7 220 54.5
DCAR_006301 Daucus carota HOM05D006647 ORTHO05D008232 3.4e-62 242.7 169 63.9
Lj9A629T102 Lonicera japonica HOM05D006647 ORTHO05D008232 5.7e-62 241.9 199 57.8
PSO339G5555 Papaver somniferum HOM05D006647 ORTHO05D008232 9.8e-62 241.1 204 57.4
RcHm_v2.0_Chr1g0314911 Rosa chinensis HOM05D006647 ORTHO05D008232 9.8e-62 241.1 227 53.3
Thecc.01G413900 Theobroma cacao HOM05D006647 ORTHO05D008232 9.8e-62 241.1 186 61.3
Carub.0005s3017 Capsella rubella HOM05D006647 ORTHO05D008232 1.3e-61 240.7 199 57.3
Haze_03236 Corylus avellana HOM05D006647 ORTHO05D008232 1.3e-61 240.7 205 57.1
Glyma.08G152700 Glycine max HOM05D006647 ORTHO05D008232 1.3e-61 240.7 193 59.1
Gorai.004G174000 Gossypium raimondii HOM05D006647 ORTHO05D008232 2.2e-61 240.0 173 65.3
HanXRQChr01g0017301 Helianthus annuus HOM05D006647 ORTHO05D008232 2.2e-61 240.0 185 60.0
Gohir.A08G145600 Gossypium hirsutum HOM05D006647 ORTHO05D008232 2.8e-61 239.6 173 64.7
Gohir.D08G166600 Gossypium hirsutum HOM05D006647 ORTHO05D008232 2.8e-61 239.6 173 64.7
MD07G1006600 Malus domestica HOM05D006647 ORTHO05D008232 2.8e-61 239.6 180 62.2
Nn2g15502 Nelumbo nucifera HOM05D006647 ORTHO05D008232 2.8e-61 239.6 196 58.7
Solyc01g086900.4 Solanum lycopersicum HOM05D006647 ORTHO05D008232 2.8e-61 239.6 187 60.4
Sopen01g033910 Solanum pennellii HOM05D006647 ORTHO05D008232 2.8e-61 239.6 187 60.4
CsaV3_7G031240 Cucumis sativus L. HOM05D006647 ORTHO05D008232 3.7e-61 239.2 179 63.1
SMO351G0607 Selaginella moellendorffii HOM05D006647 ORTHO05D008232 3.7e-61 239.2 157 68.2
EL10Ac2g04310 Beta vulgaris HOM05D006647 ORTHO05D008232 4.8e-61 238.8 263 47.9
Lj5g0023478 Lotus japonicus HOM05D006647 ORTHO05D008232 4.8e-61 238.8 198 58.6
Duzib138G0958 Durio zibethinus HOM05D006647 ORTHO05D008232 6.3e-61 238.4 161 67.7
Sabra09G0047700 Salix brachista HOM05D006647 ORTHO05D008232 6.3e-61 238.4 204 57.8
CANSAT01G0516 Cannabis sativa HOM05D006647 ORTHO05D008232 8.3e-61 238.0 196 57.7
Lalb_Chr25g0283211 Lupinus albus HOM05D006647 ORTHO05D008232 1.1e-60 237.7 187 61.0
PSO384G2587 Papaver somniferum HOM05D006647 ORTHO05D008232 1.4e-60 237.3 210 55.7
AUR62009372 Chenopodium quinoa HOM05D006647 ORTHO05D008232 1.8e-60 236.9 213 54.5
Potri.009G064500 Populus trichocarpa HOM05D006647 ORTHO05D008232 1.8e-60 236.9 210 55.2
Sed0007518 Sechium edule HOM05D006647 ORTHO05D008232 1.8e-60 236.9 231 52.4
MSTRG.5006 Avicennia marina HOM05D006647 ORTHO05D008232 2.4e-60 236.5 201 55.7
BcaC01g03971 Brassica carinata HOM05D006647 ORTHO05D008232 2.4e-60 236.5 181 59.1
BraA03t12997Z Brassica rapa HOM05D006647 ORTHO05D008232 2.4e-60 236.5 181 59.1
COL.COLO4_23898 Corchorus olitorius HOM05D006647 ORTHO05D008232 2.4e-60 236.5 160 66.2
AL5G46420 Arabidopsis lyrata HOM05D006647 ORTHO05D008232 3.1e-60 236.1 199 56.8
C03p46630 Brassica napus HOM05D006647 ORTHO05D008232 3.1e-60 236.1 181 59.1
BolC3t16926H Brassica oleracea HOM05D006647 ORTHO05D008232 3.1e-60 236.1 181 59.1
Ciclev10032303m.g Citrus clementina HOM05D006647 ORTHO05D008232 3.1e-60 236.1 195 56.4
Thhalv10006150m.g Eutrema salsugineum HOM05D006647 ORTHO05D008232 3.1e-60 236.1 194 54.6
Phvul.005G036700 Phaseolus vulgaris HOM05D006647 ORTHO05D008232 3.1e-60 236.1 193 60.1
Actinidia20680 Actinidia chinensis HOM05D006647 ORTHO05D008232 4.1e-60 235.7 186 59.7
A03p38460 Brassica napus HOM05D006647 ORTHO05D008232 4.1e-60 235.7 181 58.6
Hma1.2p1_0929F.1_g237940 Hydrangea macrophylla HOM05D006647 ORTHO05D008232 5.4e-60 235.3 183 60.1
Psat5g204920 Pisum sativum HOM05D006647 ORTHO05D008232 5.4e-60 235.3 197 57.9
CBR_g41537 Chara braunii HOM05D006647 ORTHO05D008232 7.0e-60 235.0 170 62.9
Eucgr.G03394 Eucalyptus grandis HOM05D006647 ORTHO05D008232 7.0e-60 235.0 195 55.9
VMungo1080G0119 Vigna mungo HOM05D006647 ORTHO05D008232 9.1e-60 234.6 193 59.6
CiPaw.13G002900 Carya illinoinensis HOM05D006647 ORTHO05D008232 1.2e-59 234.2 189 60.3
Medtr3g027870 Medicago truncatula HOM05D006647 ORTHO05D008232 1.2e-59 234.2 193 58.5
HPP92_015763 Vanilla planifolia HOM05D006647 ORTHO05D008232 1.2e-59 234.2 169 62.7
AT5G26880 Arabidopsis thaliana HOM05D006647 ORTHO05D008232 1.6e-59 233.8 209 55.0
CSS0029691 Camellia sinensis var. sinensis HOM05D006647 ORTHO05D008232 1.6e-59 233.8 172 63.4
TPR.G12287 Trifolium pratense HOM05D006647 ORTHO05D008232 1.6e-59 233.8 203 55.7
CDE06G2349 Ceratophyllum demersum HOM05D006647 ORTHO05D008232 3.5e-59 232.6 164 64.0
Sp1g00030 Schrenkiella parvula HOM05D006647 ORTHO05D008232 3.5e-59 232.6 199 53.8
Sp5g00020 Schrenkiella parvula HOM05D006647 ORTHO05D008232 3.5e-59 232.6 199 53.8
Atru.chr11.2639 Acer truncatum HOM05D006647 ORTHO05D008232 4.5e-59 232.3 212 53.8
Prupe.2G009700 Prunus persica HOM05D006647 ORTHO05D008232 1.0e-58 231.1 197 56.9
arahy.Tifrunner.gnm1.ann1.BH4E67 Arachis hypogaea HOM05D006647 ORTHO05D008232 2.9e-58 229.6 213 52.6
arahy.Tifrunner.gnm1.ann1.K7GJAS Arachis hypogaea HOM05D006647 ORTHO05D008232 2.9e-58 229.6 213 52.6
Manes.07G004100 Manihot esculenta HOM05D006647 ORTHO05D008232 5.0e-58 228.8 186 57.0
unitig_0.g1579 Utricularia gibba HOM05D006647 ORTHO05D008232 1.1e-57 227.6 278 47.5
Hund20080 Selenicereus undatus HOM05D006647 ORTHO05D008232 2.5e-57 226.5 173 62.4
QL04p005221 Quercus lobata HOM05D006647 ORTHO05D008232 1.6e-56 223.8 203 55.2
Cc02_g28430 Coffea canephora HOM05D006647 ORTHO05D008232 4.0e-55 219.2 164 60.4
SalBow4G2297 Salvia bowleyana HOM05D006647 ORTHO05D008232 2.0e-54 216.9 163 59.5
Migut.N01481 Erythranthe guttata HOM05D006647 ORTHO05D008232 5.7e-54 215.3 206 53.4
MSTRG.5008 Avicennia marina HOM05D006647 ORTHO05D008232 1.3e-53 214.2 254 44.5
Migut.O00562 Erythranthe guttata HOM05D006647 ORTHO05D008232 8.3e-53 211.5 180 56.7
MBI01_g36432_MAGBIO Magnolia biondii HOM05D006647 ORTHO05D008232 8.3e-53 211.5 159 60.4
SGA_v2.0_scaffold4G02252 Striga asiatica HOM05D006647 ORTHO05D008232 1.7e-50 203.8 189 55.0
ClCG09G004320 Citrullus lanatus HOM05D006647 ORTHO05D008232 3.8e-50 202.6 195 50.8
Lsat_1_v5_gn_1_109441 Lactuca sativa HOM05D006647 ORTHO05D008232 2.5e-49 199.9 184 53.8
ECA248G3327 Erigeron canadensis HOM05D006647 ORTHO05D008232 1.2e-48 197.6 193 50.3
Rhsim01G0130800 Rhododendron simsii HOM05D006647 ORTHO05D008232 1.8e-47 193.7 257 42.4
A03p38500 Brassica napus HOM05D006647 ORTHO05D008232 3.4e-46 189.5 131 62.6
MCO06G107 Micromonas commoda HOM05D006647 ORTHO05D008232 2.4e-44 183.3 172 53.5
MBI04_g14259_MAGBIO Magnolia biondii HOM05D006647 ORTHO05D008232 2.7e-43 179.9 184 52.2
Cre10.g417650 Chlamydomonas reinhardtii HOM05D006647 ORTHO05D008232 2.5e-41 173.3 160 51.9
AUR62023053 Chenopodium quinoa HOM05D006647 ORTHO05D008232 5.6e-41 172.2 186 48.4
Oeu010354.1 Olea europaea HOM05D006647 ORTHO05D008232 1.3e-37 161.0 100 72.0
FAN01G0876 Fragaria x ananassa HOM05D006647 ORTHO05D008232 1.9e-36 157.1 113 65.5
Os08g0506500 Oryza sativa ssp. japonica HOM05D006647 ORTHO05D008232 2.4e-36 156.8 217 44.2
FAN01G1843 Fragaria x ananassa HOM05D006647 ORTHO05D008232 5.4e-36 155.6 113 63.7
PGR031G3323 Punica granatum HOM05D006647 ORTHO05D008232 1.2e-35 154.5 92 75.0
Zm00001eb034920 Zea mays HOM05D006647 ORTHO05D008232 2.1e-35 153.7 105 66.7
vmacro21178 Vaccinium macrocarpon HOM05D006647 ORTHO05D008232 4.6e-35 152.5 251 38.6
MELO3C023534.2 Cucumis melo HOM05D006647 ORTHO05D008232 4.7e-32 142.5 118 55.9
QL04p005246 Quercus lobata HOM05D000030 ORTHO05D008232 6.2e-32 142.1 161 45.3
Cc00_g30670 Coffea canephora HOM05D006647 ORTHO05D008232 1.2e-30 137.9 82 72.0
Ca_26823_v3 Cicer arietinum L. HOM05D006647 ORTHO05D008232 4.4e-30 136.0 81 71.6
PGSC0003DMG400006881 Solanum tuberosum HOM05D006647 ORTHO05D008232 9.5e-25 118.2 113 51.3
Cpa.g.sc234.12 Carica papaya HOM05D006647 ORTHO05D008232 6.2e-24 115.5 95 57.9
Aa31LG10G17440 Aethionema arabicum HOM05D006647 ORTHO05D008232 8.4e-21 105.1 106 47.2
Cpa.g.sc234.13 Carica papaya HOM05D006647 ORTHO05D008232 4.2e-20 102.8 77 62.3
MBI04_g09488_MAGBIO Magnolia biondii HOM05D006647 ORTHO05D008232 4.2e-20 102.8 62 69.4
BcaB01g01017 Brassica carinata HOM05D006647 ORTHO05D008232 5.4e-20 102.4 113 45.1
BcaB04g18808 Brassica carinata HOM05D006647 ORTHO05D008232 5.4e-20 102.4 113 45.1
PRCOL_00005260 Prasinoderma coloniale HOM05D006647 ORTHO05D008232 1.0e-18 98.2 162 37.7
Ah.10g029810 Amaranthus hybridus HOM05D006647 ORTHO05D008232 2.5e-17 93.6 94 51.1
Aa31LG10G17450 Aethionema arabicum HOM05D006647 ORTHO05D008232 2.8e-16 90.1 103 47.6
FAN01G1906 Fragaria x ananassa HOM05D006647 ORTHO05D008232 3.1e-15 86.7 77 51.9


User provided reference genes

Program Settings