Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c8_10366 Physcomitrium patens HOM05D003469 ORTHO05D004084 0.0e+00 1654.8 980 100.0
Pp3c8_10360 Physcomitrium patens HOM05D003469 ORTHO05D004084 0.0e+00 1634.8 1021 96.0
SMO164G0159 Selaginella moellendorffii HOM05D003469 ORTHO05D004084 2.1e-255 886.3 996 51.7
AagrBONN_evm.TU.Sc2ySwM_362.2764 Anthoceros agrestis HOM05D003469 ORTHO05D004084 3.3e-232 809.3 994 50.6
Mapoly0024s0108 Marchantia polymorpha HOM05D003469 ORTHO05D004084 4.0e-222 775.8 840 51.7
TAR628G0771 Trochodendron aralioides HOM05D003469 ORTHO05D004084 6.2e-207 725.3 896 45.2
Nn5g27173 Nelumbo nucifera HOM05D003469 ORTHO05D004084 8.7e-193 678.3 991 46.4
Cc00_g11470 Coffea canephora HOM05D003469 ORTHO05D004084 2.5e-184 650.2 893 41.2
MBI03_g18641_MAGBIO Magnolia biondii HOM05D003469 ORTHO05D004084 8.1e-183 645.2 895 42.7
CiPaw.03G010300 Carya illinoinensis HOM05D003469 ORTHO05D004084 1.4e-182 644.4 898 41.2
Thecc.08G168800 Theobroma cacao HOM05D003469 ORTHO05D004084 9.0e-182 641.7 892 42.2
MSTRG.1003 Avicennia marina HOM05D003469 ORTHO05D004084 2.6e-181 640.2 889 42.1
PSO170G4646 Papaver somniferum HOM05D003469 ORTHO05D004084 2.6e-181 640.2 902 41.7
GSVIVG01036699001 Vitis vinifera HOM05D003469 ORTHO05D004084 7.1e-179 632.1 936 41.3
Phvul.011G031000 Phaseolus vulgaris HOM05D003469 ORTHO05D004084 5.1e-177 625.9 892 40.9
Solyc06g063420.4 Solanum lycopersicum HOM05D003469 ORTHO05D004084 5.1e-177 625.9 899 39.7
Glyma.11G102000 Glycine max HOM05D003469 ORTHO05D004084 3.3e-176 623.2 892 40.8
Aqoxy6G00028 Aquilegia oxysepala HOM05D003469 ORTHO05D004084 3.7e-175 619.8 899 40.7
Sopen06g022880 Solanum pennellii HOM05D003469 ORTHO05D004084 1.4e-174 617.8 890 39.9
Dinv28114 Davidia involucrata HOM05D003469 ORTHO05D004084 4.0e-174 616.3 900 40.7
Eucgr.G01221 Eucalyptus grandis HOM05D003469 ORTHO05D004084 5.3e-174 615.9 890 41.2
arahy.Tifrunner.gnm1.ann1.046I3L Arachis hypogaea HOM05D003469 ORTHO05D004084 9.0e-174 615.1 901 41.2
Actinidia21939 Actinidia chinensis HOM05D003469 ORTHO05D004084 2.6e-173 613.6 899 41.0
arahy.Tifrunner.gnm1.ann1.M9HC5A Arachis hypogaea HOM05D003469 ORTHO05D004084 2.6e-173 613.6 908 40.9
Glyma.12G027700 Glycine max HOM05D003469 ORTHO05D004084 4.5e-173 612.8 891 40.7
Migut.C00329 Erythranthe guttata HOM05D003469 ORTHO05D004084 1.6e-170 604.4 894 39.7
ECA232G2309 Erigeron canadensis HOM05D003469 ORTHO05D004084 7.9e-170 602.1 898 38.5
Sc09g0010840 Simmondsia chinensis HOM05D003469 ORTHO05D004084 1.8e-169 600.9 902 39.8
Lj9C162G1 Lonicera japonica HOM05D003469 ORTHO05D004084 2.3e-169 600.5 919 43.2
VMungo1127G1455 Vigna mungo HOM05D003469 ORTHO05D004084 1.1e-168 598.2 898 38.9
CSS0010807 Camellia sinensis var. sinensis HOM05D003469 ORTHO05D004084 1.5e-168 597.8 898 43.3
MELO3C013095.2 Cucumis melo HOM05D003469 ORTHO05D004084 4.3e-168 596.3 900 40.0
Nitab4.5_0003757g0100 Nicotiana tabacum HOM05D003469 ORTHO05D004084 7.4e-168 595.5 910 42.6
CsaV3_3G043790 Cucumis sativus L. HOM05D003469 ORTHO05D004084 9.6e-168 595.1 900 39.9
ClCG07G013810 Citrullus lanatus HOM05D003469 ORTHO05D004084 2.0e-165 587.4 900 39.4
Lalb_Chr07g0195581 Lupinus albus HOM05D003469 ORTHO05D004084 5.8e-165 585.9 909 39.5
FvH4_6g37900 Fragaria vesca HOM05D003469 ORTHO05D004084 1.7e-164 584.3 894 38.4
FAN14G5376 Fragaria x ananassa HOM05D003469 ORTHO05D004084 2.9e-164 583.6 894 38.4
Peaxi162Scf00818g00323 Petunia axillaris HOM05D003469 ORTHO05D004084 2.9e-164 583.6 839 44.0
CAN.G14.42 Capsicum annuum HOM05D003469 ORTHO05D004084 3.8e-164 583.2 900 42.0
Lj9C173G0 Lonicera japonica HOM05D003469 ORTHO05D004084 1.9e-163 580.9 881 40.0
Lsat_1_v5_gn_4_131841 Lactuca sativa HOM05D003469 ORTHO05D004084 2.7e-162 577.0 901 43.0
Lj1g0005967 Lotus japonicus HOM05D003469 ORTHO05D004084 4.6e-162 576.2 865 39.2
Duzib235G0325 Durio zibethinus HOM05D003469 ORTHO05D004084 6.0e-162 575.9 863 40.4
Gorai.008G247300 Gossypium raimondii HOM05D003469 ORTHO05D004084 1.0e-161 575.1 874 39.2
CANSAT78G0348 Cannabis sativa HOM05D003469 ORTHO05D004084 6.7e-161 572.4 909 42.1
TWI38G1177 Tripterygium wilfordii HOM05D003469 ORTHO05D004084 8.7e-161 572.0 890 42.0
Rhsim12G0000800 Rhododendron simsii HOM05D003469 ORTHO05D004084 4.3e-160 569.7 774 42.4
Sed0013857 Sechium edule HOM05D003469 ORTHO05D004084 4.3e-160 569.7 898 39.4
FAN02G0848 Fragaria x ananassa HOM05D003469 ORTHO05D004084 1.3e-159 568.2 894 37.8
FAN09G4617 Fragaria x ananassa HOM05D003469 ORTHO05D004084 1.6e-159 567.8 895 37.8
Atru.chr9.1130 Acer truncatum HOM05D003469 ORTHO05D004084 6.3e-159 565.8 897 42.3
HanXRQChr09g0266911 Helianthus annuus HOM05D003469 ORTHO05D004084 2.4e-158 563.9 897 37.2
Gohir.A12G230000 Gossypium hirsutum HOM05D003469 ORTHO05D004084 4.5e-157 559.7 874 39.4
RcHm_v2.0_Chr2g0151101 Rosa chinensis HOM05D003469 ORTHO05D004084 1.0e-156 558.5 884 37.9
Gohir.D12G231100 Gossypium hirsutum HOM05D003469 ORTHO05D004084 3.2e-155 553.5 874 38.6
AUR62008300 Chenopodium quinoa HOM05D003469 ORTHO05D004084 1.6e-154 551.2 895 37.3
SalBow7G2370 Salvia bowleyana HOM05D003469 ORTHO05D004084 4.6e-154 549.7 932 37.3
RcHm_v2.0_Chr2g0151071 Rosa chinensis HOM05D003469 ORTHO05D004084 1.4e-153 548.1 894 37.7
Prupe.8G070000 Prunus persica HOM05D003469 ORTHO05D004084 3.0e-153 547.0 889 41.1
AUR62031062 Chenopodium quinoa HOM05D003469 ORTHO05D004084 2.0e-152 544.3 891 37.5
HPP92_015320 Vanilla planifolia HOM05D003469 ORTHO05D004084 2.0e-152 544.3 881 38.4
EL10Ac5g10861 Beta vulgaris HOM05D003469 ORTHO05D004084 7.4e-152 542.3 927 37.3
Hund09398 Selenicereus undatus HOM05D003469 ORTHO05D004084 1.4e-150 538.1 865 38.5
MD09G1155000 Malus domestica HOM05D003469 ORTHO05D004084 2.0e-149 534.3 899 40.3
Os11g0266800 Oryza sativa ssp. japonica HOM05D003469 ORTHO05D004084 1.0e-148 531.9 866 35.8
unitig_26.g9845 Utricularia gibba HOM05D003469 ORTHO05D004084 2.5e-147 527.3 995 35.5
SGA_v2.0_scaffold8G04312 Striga asiatica HOM05D003469 ORTHO05D004084 3.6e-146 523.5 965 35.9
TPR.G38733 Trifolium pratense HOM05D003469 ORTHO05D004084 1.4e-145 521.5 906 35.7
Medtr4g079390 Medicago truncatula HOM05D003469 ORTHO05D004084 2.2e-143 514.2 901 35.4
DCAR_001477 Daucus carota HOM05D003469 ORTHO05D004084 4.5e-141 506.5 922 36.7
Medtr4g074860 Medicago truncatula HOM05D003469 ORTHO05D004084 5.9e-141 506.1 921 35.5
Manes.06G016500 Manihot esculenta HOM05D003469 ORTHO05D004084 1.3e-140 505.0 843 40.8
Aqoxy4G02849 Aquilegia oxysepala HOM05D003469 ORTHO05D004084 1.8e-137 494.6 891 35.2
Nitab4.5_0005224g0040 Nicotiana tabacum HOM05D003469 ORTHO05D004084 2.4e-134 484.2 889 35.0
Peaxi162Scf00015g00107 Petunia axillaris HOM05D003469 ORTHO05D004084 1.7e-132 478.0 863 39.4
Nitab4.5_0002906g0070 Nicotiana tabacum HOM05D003469 ORTHO05D004084 4.2e-131 473.4 884 34.7
QL09p054764 Quercus lobata HOM05D003469 ORTHO05D004084 2.8e-127 460.7 626 42.5
Lj9A422T76 Lonicera japonica HOM05D003469 ORTHO05D004084 3.7e-127 460.3 736 42.8
RcHm_v2.0_Chr6g0293861 Rosa chinensis HOM05D003469 ORTHO05D004084 9.1e-126 455.7 895 35.2
vmacro00914 Vaccinium macrocarpon HOM05D003469 ORTHO05D004084 2.0e-125 454.5 1355 28.5
Potri.013G128900 Populus trichocarpa HOM05D003469 ORTHO05D004084 5.0e-124 449.9 868 36.8
Nitab4.5_0002354g0130 Nicotiana tabacum HOM05D003469 ORTHO05D004084 6.5e-124 449.5 882 38.2
FAN15G0576 Fragaria x ananassa HOM05D003469 ORTHO05D004084 8.8e-121 439.1 896 34.8
FAN24G3399 Fragaria x ananassa HOM05D003469 ORTHO05D004084 3.4e-120 437.2 896 34.4
CBR_g36749 Chara braunii HOM05D003469 ORTHO05D004084 4.5e-117 426.8 1237 28.8
Dinv15687 Davidia involucrata HOM05D003469 ORTHO05D004084 9.5e-115 419.1 900 33.4
CDE05G0531 Ceratophyllum demersum HOM05D003469 ORTHO05D004084 4.7e-114 416.8 479 48.4
FvH4_2g25610 Fragaria vesca HOM05D003469 ORTHO05D004084 8.0e-114 416.0 861 33.9
A06p13570 Brassica napus HOM05D003469 ORTHO05D004084 1.8e-113 414.8 846 33.6
BraA06t24509Z Brassica rapa HOM05D003469 ORTHO05D004084 1.8e-113 414.8 846 33.6
TAR633G1289 Trochodendron aralioides HOM05D003469 ORTHO05D004084 2.3e-113 414.5 386 54.1
C05p16090 Brassica napus HOM05D003469 ORTHO05D004084 3.0e-113 414.1 846 33.6
BolC5t30309H Brassica oleracea HOM05D003469 ORTHO05D004084 4.0e-113 413.7 846 33.5
BcaC05g25689 Brassica carinata HOM05D003469 ORTHO05D004084 5.2e-113 413.3 846 33.6
Zm00001eb171180 Zea mays HOM05D003469 ORTHO05D004084 8.9e-113 412.5 739 34.5
BolC4t22588H Brassica oleracea HOM05D003469 ORTHO05D004084 1.5e-112 411.8 844 33.8
FAN27G0386 Fragaria x ananassa HOM05D003469 ORTHO05D004084 4.4e-112 410.2 874 34.1
ATR1089G047 Amborella trichopoda HOM05D003469 ORTHO05D004084 5.7e-112 409.8 894 37.2
BcaB07g34024 Brassica carinata HOM05D003469 ORTHO05D004084 3.1e-110 404.1 847 33.8
Carub.0001s1741 Capsella rubella HOM05D003469 ORTHO05D004084 3.5e-109 400.6 854 33.3
BcaC02g11929 Brassica carinata HOM05D003469 ORTHO05D004084 7.8e-109 399.4 844 32.9
AT1G17680 Arabidopsis thaliana HOM05D003469 ORTHO05D004084 1.2e-106 392.1 856 32.9
THA.LOC104807542 Tarenaya hassleriana HOM05D003469 ORTHO05D004084 1.2e-106 392.1 946 30.9
TPR.G32330 Trifolium pratense HOM05D003469 ORTHO05D004084 1.2e-106 392.1 857 32.0
C04p09790 Brassica napus HOM05D003469 ORTHO05D004084 3.6e-106 390.6 860 35.8
Thhalv10006758m.g Eutrema salsugineum HOM05D003469 ORTHO05D004084 1.0e-105 389.0 847 32.5
AL1G30030 Arabidopsis lyrata HOM05D003469 ORTHO05D004084 1.5e-104 385.2 847 32.7
AUR62039415 Chenopodium quinoa HOM05D003469 ORTHO05D004084 2.0e-104 384.8 633 37.9
Ciclev10026956m.g Citrus clementina HOM05D003469 ORTHO05D004084 9.8e-104 382.5 843 32.1
Haze_14033 Corylus avellana HOM05D003469 ORTHO05D004084 1.3e-103 382.1 570 40.5
Ciclev10019721m.g Citrus clementina HOM05D003469 ORTHO05D004084 1.1e-97 362.5 487 43.1
Aa31LG7G2510 Aethionema arabicum HOM05D003469 ORTHO05D004084 2.6e-96 357.8 853 31.5
Ca_19034_v3 Cicer arietinum L. HOM05D003469 ORTHO05D004084 1.0e-92 345.9 345 51.0
PGSC0003DMG400033134 Solanum tuberosum HOM05D003469 ORTHO05D004084 2.0e-88 331.6 328 52.1
THA.LOC104800339 Tarenaya hassleriana HOM05D003469 ORTHO05D004084 1.3e-87 328.9 893 30.1
Ah.15g095790 Amaranthus hybridus HOM05D003469 ORTHO05D004084 1.2e-80 305.8 1394 23.4
Sp1g15780 Schrenkiella parvula HOM05D003469 ORTHO05D004084 2.6e-80 304.7 288 52.8
MD17G1141100 Malus domestica HOM05D003469 ORTHO05D004084 3.4e-80 304.3 321 48.3
TAR633G1719 Trochodendron aralioides HOM05D003469 ORTHO05D004084 4.3e-75 287.3 358 45.0
SEGI_08666 Sequoiadendron giganteum HOM05D003469 ORTHO05D004084 9.9e-72 276.2 181 72.4
SHI03012 Sapria himalayana HOM05D003469 ORTHO05D004084 2.9e-71 274.6 289 51.2
Oeu019664.1 Olea europaea HOM05D003469 ORTHO05D004084 3.2e-70 271.2 368 40.5
CDE05G3544 Ceratophyllum demersum HOM05D003469 ORTHO05D004084 3.4e-64 251.1 364 40.7
C04p00480 Brassica napus HOM05D003469 ORTHO05D004084 2.0e-56 225.3 200 54.0
HanXRQChr13g0406831 Helianthus annuus HOM05D003469 ORTHO05D004084 1.0e-52 213.0 202 50.5
FvH4_6g38050 Fragaria vesca HOM05D003469 ORTHO05D004084 5.1e-52 210.7 774 24.9
EL10Ac5g10434 Beta vulgaris HOM05D003469 ORTHO05D004084 4.3e-51 207.6 641 30.1
FvH4_6g38030 Fragaria vesca HOM05D003469 ORTHO05D004084 3.4e-48 198.0 322 35.7
COL.COLO4_25121 Corchorus olitorius HOM05D003469 ORTHO05D004084 1.0e-47 196.4 366 35.2
Potri.013G129500 Populus trichocarpa HOM05D003469 ORTHO05D000003 3.8e-47 194.5 334 36.8
Cre10.g464950 Chlamydomonas reinhardtii HOM05D003469 ORTHO05D004084 6.5e-47 193.7 302 38.7
MD17G1141000 Malus domestica HOM05D003469 ORTHO05D004084 3.2e-46 191.4 416 38.7
FAN20G2279 Fragaria x ananassa HOM05D003469 ORTHO05D004084 3.5e-45 188.0 180 53.3
Ciclev10020572m.g Citrus clementina HOM05D003469 ORTHO05D004084 1.3e-42 179.5 334 46.7
Oeu035042.1 Olea europaea HOM05D003469 ORTHO05D004084 4.8e-42 177.6 249 43.8
SEGI_05114 Sequoiadendron giganteum HOM05D003469 ORTHO05D004084 8.2e-42 176.8 151 61.6
QL09p054785 Quercus lobata HOM05D003469 ORTHO05D004084 1.7e-39 169.1 186 50.0
Ca_16139_v3 Cicer arietinum L. HOM05D003469 ORTHO05D004084 2.2e-39 168.7 320 34.1
Medtr4g074690 Medicago truncatula HOM05D003469 ORTHO05D004084 1.9e-38 165.6 227 40.1
SEGI_26656 Sequoiadendron giganteum HOM05D003469 ORTHO05D000001 9.4e-38 163.3 129 60.5
vmacro23125 Vaccinium macrocarpon HOM05D003469 ORTHO05D004084 9.4e-38 163.3 423 28.1
COL.COLO4_25120 Corchorus olitorius HOM05D003469 ORTHO05D004084 1.4e-36 159.5 347 35.7
Thhalv10002713m.g Eutrema salsugineum HOM05D003469 ORTHO05D004084 2.0e-35 155.6 143 56.6
SHI03015 Sapria himalayana HOM05D003469 ORTHO05D004084 3.1e-33 148.3 250 34.0
AUR62000094 Chenopodium quinoa HOM05D003469 ORTHO05D004084 1.3e-31 142.9 410 26.6
Sabra13G0107500 Salix brachista HOM05D000001 ORTHO05D000003 4.7e-29 134.4 218 40.4
Sp4g05240 Schrenkiella parvula HOM05D000751 ORTHO05D005618 1.8e-28 132.5 575 24.2
Psat0s3379g0080 Pisum sativum HOM05D003469 ORTHO05D004084 6.3e-26 124.0 206 36.9
Ca_16137_v3 Cicer arietinum L. HOM05D003469 ORTHO05D004084 5.9e-24 117.5 181 37.6
Cpa.g.sc21.245 Carica papaya HOM05D003469 ORTHO05D004084 1.0e-23 116.7 361 25.8
ATR0002G001 Amborella trichopoda HOM05D003469 ORTHO05D004084 1.3e-23 116.3 84 60.7
BcaC02g12574 Brassica carinata HOM05D003469 ORTHO05D004084 1.7e-23 115.9 106 56.6
Actinidia02459 Actinidia chinensis HOM05D003469 ORTHO05D004084 6.5e-23 114.0 125 44.8
Cpa.g.sc21.244 Carica papaya HOM05D003469 ORTHO05D004084 4.2e-22 111.3 94 60.6
ECA232G2749 Erigeron canadensis HOM05D001807 ORTHO05D002044 7.2e-22 110.5 93 55.9
Aa31LG2G17580 Aethionema arabicum HOM05D003469 ORTHO05D004084 6.1e-21 107.5 83 59.0
CARHR018280 Cardamine hirsuta HOM05D003469 ORTHO05D004084 1.1e-19 103.2 449 23.8
Haze_14035 Corylus avellana HOM05D003469 ORTHO05D004084 5.7e-19 100.9 232 32.8
Rhsim02G0229800 Rhododendron simsii HOM05D000151 ORTHO05D000074 3.7e-18 98.2 88 58.0
FAN20G1461 Fragaria x ananassa HOM05D003469 ORTHO05D004084 1.6e-16 92.8 122 41.0
Cpa.g.sc21.247 Carica papaya HOM05D003469 ORTHO05D004084 1.6e-13 82.8 135 37.8
PRCOL_00004204 Prasinoderma coloniale HOM05D003469 ORTHO05D004084 8.0e-13 80.5 342 37.7
AagrBONN_evm.TU.Sc2ySwM_362.2853 Anthoceros agrestis HOM05D003469 ORTHO05D004084 1.2e-11 76.6 56 62.5
Ca_19033_v3 Cicer arietinum L. HOM05D003469 ORTHO05D004084 7.5e-11 73.9 61 54.1
C04p00500 Brassica napus HOM05D003469 ORTHO05D004084 2.8e-10 72.0 270 28.9
Haze_14034 Corylus avellana HOM05D003469 ORTHO05D004084 3.7e-10 71.6 86 41.9
MCO03G148 Micromonas commoda HOM05D003469 ORTHO05D004084 6.3e-10 70.9 993 24.3
Sp4g05220 Schrenkiella parvula HOM05D003469 ORTHO05D004084 5.4e-09 67.8 35 80.0
Lj9A422T78 Lonicera japonica HOM05D003469 ORTHO05D029064 9.1e-09 67.0 90 47.8
Glyma.07G124800 Glycine max HOM05D003469 ORTHO05D004084 2.2e-07 62.4 151 29.8
SEGI_31377 Sequoiadendron giganteum HOM05D003469 ORTHO05D029064 3.8e-07 61.6 42 71.4
Lsat_1_v5_gn_0_35341 Lactuca sativa HOM05D003469 ORTHO05D004084 5.0e-07 61.2 81 39.5
Oeu026515.1 Olea europaea HOM05D003469 ORTHO05D004084 1.5e-06 59.7 62 45.2
Ca_16140_v3 Cicer arietinum L. HOM05D003469 ORTHO05D004084 3.2e-06 58.5 161 27.3
AagrBONN_evm.TU.Sc2ySwM_362.2852 Anthoceros agrestis HOM05D003469 ORTHO05D004084 9.4e-06 57.0 117 35.0


User provided reference genes

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