Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c8_10360 Physcomitrium patens HOM05D003469 ORTHO05D004084 0.0e+00 1731.5 1021 100.0
Pp3c8_10366 Physcomitrium patens HOM05D003469 ORTHO05D004084 0.0e+00 1635.5 1021 96.0
SMO164G0159 Selaginella moellendorffii HOM05D003469 ORTHO05D004084 7.5e-272 941.0 1000 53.6
AagrBONN_evm.TU.Sc2ySwM_362.2764 Anthoceros agrestis HOM05D003469 ORTHO05D004084 9.8e-248 860.9 995 52.5
Mapoly0024s0108 Marchantia polymorpha HOM05D003469 ORTHO05D004084 1.0e-236 824.3 844 53.6
TAR628G0771 Trochodendron aralioides HOM05D003469 ORTHO05D004084 4.6e-221 772.3 900 46.8
Nn5g27173 Nelumbo nucifera HOM05D003469 ORTHO05D004084 4.9e-207 725.7 995 47.8
CiPaw.03G010300 Carya illinoinensis HOM05D003469 ORTHO05D004084 2.4e-198 696.8 902 43.2
Cc00_g11470 Coffea canephora HOM05D003469 ORTHO05D004084 2.1e-197 693.7 897 42.5
Thecc.08G168800 Theobroma cacao HOM05D003469 ORTHO05D004084 2.1e-197 693.7 896 44.2
MBI03_g18641_MAGBIO Magnolia biondii HOM05D003469 ORTHO05D004084 3.0e-196 689.9 899 44.2
PSO170G4646 Papaver somniferum HOM05D003469 ORTHO05D004084 1.5e-195 687.6 906 43.5
GSVIVG01036699001 Vitis vinifera HOM05D003469 ORTHO05D004084 9.6e-195 684.9 938 43.3
MSTRG.1003 Avicennia marina HOM05D003469 ORTHO05D004084 3.7e-194 682.9 893 43.3
Phvul.011G031000 Phaseolus vulgaris HOM05D003469 ORTHO05D004084 7.6e-192 675.2 901 42.0
Glyma.11G102000 Glycine max HOM05D003469 ORTHO05D004084 4.9e-191 672.5 902 42.2
Dinv28114 Davidia involucrata HOM05D003469 ORTHO05D004084 3.2e-190 669.8 904 42.6
Eucgr.G01221 Eucalyptus grandis HOM05D003469 ORTHO05D004084 5.5e-190 669.1 894 43.2
Solyc06g063420.4 Solanum lycopersicum HOM05D003469 ORTHO05D004084 1.6e-189 667.5 903 41.1
Aqoxy6G00028 Aquilegia oxysepala HOM05D003469 ORTHO05D004084 4.6e-189 666.0 903 42.5
arahy.Tifrunner.gnm1.ann1.046I3L Arachis hypogaea HOM05D003469 ORTHO05D004084 1.3e-188 664.5 905 42.9
arahy.Tifrunner.gnm1.ann1.M9HC5A Arachis hypogaea HOM05D003469 ORTHO05D004084 3.9e-188 662.9 912 42.5
Glyma.12G027700 Glycine max HOM05D003469 ORTHO05D004084 5.1e-188 662.5 901 42.2
Sopen06g022880 Solanum pennellii HOM05D003469 ORTHO05D004084 7.4e-187 658.7 899 40.9
Actinidia21939 Actinidia chinensis HOM05D003469 ORTHO05D004084 4.8e-186 656.0 903 42.4
Sc09g0010840 Simmondsia chinensis HOM05D003469 ORTHO05D004084 2.0e-184 650.6 906 41.7
CSS0010807 Camellia sinensis var. sinensis HOM05D003469 ORTHO05D004084 1.0e-183 648.3 902 45.0
Migut.C00329 Erythranthe guttata HOM05D003469 ORTHO05D004084 1.0e-183 648.3 898 41.1
MELO3C013095.2 Cucumis melo HOM05D003469 ORTHO05D004084 2.2e-183 647.1 903 41.6
CsaV3_3G043790 Cucumis sativus L. HOM05D003469 ORTHO05D004084 5.0e-183 646.0 903 41.5
Nitab4.5_0003757g0100 Nicotiana tabacum HOM05D003469 ORTHO05D004084 2.7e-181 640.2 914 44.1
ClCG07G013810 Citrullus lanatus HOM05D003469 ORTHO05D004084 2.3e-180 637.1 903 40.9
VMungo1127G1455 Vigna mungo HOM05D003469 ORTHO05D004084 5.1e-180 636.0 903 40.4
ECA232G2309 Erigeron canadensis HOM05D003469 ORTHO05D004084 8.8e-180 635.2 902 39.6
Lalb_Chr07g0195581 Lupinus albus HOM05D003469 ORTHO05D004084 1.9e-179 634.0 909 41.3
Lj9C162G1 Lonicera japonica HOM05D003469 ORTHO05D004084 9.7e-179 631.7 926 44.1
Duzib235G0325 Durio zibethinus HOM05D003469 ORTHO05D004084 3.7e-178 629.8 867 42.4
FvH4_6g37900 Fragaria vesca HOM05D003469 ORTHO05D004084 1.4e-177 627.9 898 40.1
Gorai.008G247300 Gossypium raimondii HOM05D003469 ORTHO05D004084 1.4e-177 627.9 878 41.1
FAN14G5376 Fragaria x ananassa HOM05D003469 ORTHO05D004084 1.8e-177 627.5 898 40.1
Lj1g0005967 Lotus japonicus HOM05D003469 ORTHO05D004084 2.4e-177 627.1 869 41.1
Peaxi162Scf00818g00323 Petunia axillaris HOM05D003469 ORTHO05D004084 3.1e-177 626.7 843 45.4
CAN.G14.42 Capsicum annuum HOM05D003469 ORTHO05D004084 2.6e-176 623.6 904 43.3
TWI38G1177 Tripterygium wilfordii HOM05D003469 ORTHO05D004084 7.7e-176 622.1 894 43.6
Lsat_1_v5_gn_4_131841 Lactuca sativa HOM05D003469 ORTHO05D004084 8.5e-175 618.6 905 44.1
CANSAT78G0348 Cannabis sativa HOM05D003469 ORTHO05D004084 1.2e-173 614.8 913 43.8
Atru.chr9.1130 Acer truncatum HOM05D003469 ORTHO05D004084 1.6e-173 614.4 901 43.8
Sed0013857 Sechium edule HOM05D003469 ORTHO05D004084 1.6e-173 614.4 901 40.7
Gohir.A12G230000 Gossypium hirsutum HOM05D003469 ORTHO05D004084 6.1e-173 612.5 878 41.2
Lj9C173G0 Lonicera japonica HOM05D003469 ORTHO05D004084 7.9e-173 612.1 888 40.9
Rhsim12G0000800 Rhododendron simsii HOM05D003469 ORTHO05D004084 7.9e-173 612.1 778 43.8
FAN09G4617 Fragaria x ananassa HOM05D003469 ORTHO05D004084 1.0e-172 611.7 899 39.5
FAN02G0848 Fragaria x ananassa HOM05D003469 ORTHO05D004084 3.0e-172 610.1 898 39.5
RcHm_v2.0_Chr2g0151101 Rosa chinensis HOM05D003469 ORTHO05D004084 1.5e-171 607.8 888 39.9
Gohir.D12G231100 Gossypium hirsutum HOM05D003469 ORTHO05D004084 4.4e-171 606.3 878 40.4
HanXRQChr09g0266911 Helianthus annuus HOM05D003469 ORTHO05D004084 4.4e-171 606.3 901 38.6
Prupe.8G070000 Prunus persica HOM05D003469 ORTHO05D004084 3.1e-169 600.1 893 43.2
AUR62008300 Chenopodium quinoa HOM05D003469 ORTHO05D004084 1.2e-168 598.2 899 38.8
RcHm_v2.0_Chr2g0151071 Rosa chinensis HOM05D003469 ORTHO05D004084 2.0e-168 597.4 898 39.6
HPP92_015320 Vanilla planifolia HOM05D003469 ORTHO05D004084 4.5e-168 596.3 883 40.1
SalBow7G2370 Salvia bowleyana HOM05D003469 ORTHO05D004084 5.0e-167 592.8 936 39.1
AUR62031062 Chenopodium quinoa HOM05D003469 ORTHO05D004084 1.1e-166 591.7 895 39.0
EL10Ac5g10861 Beta vulgaris HOM05D003469 ORTHO05D004084 5.5e-166 589.3 931 38.9
MD09G1155000 Malus domestica HOM05D003469 ORTHO05D004084 5.2e-164 582.8 903 42.2
unitig_26.g9845 Utricularia gibba HOM05D003469 ORTHO05D004084 4.1e-161 573.2 999 36.6
Os11g0266800 Oryza sativa ssp. japonica HOM05D003469 ORTHO05D004084 1.6e-160 571.2 870 37.4
SGA_v2.0_scaffold8G04312 Striga asiatica HOM05D003469 ORTHO05D004084 1.3e-159 568.2 969 37.2
Hund09398 Selenicereus undatus HOM05D003469 ORTHO05D004084 1.1e-158 565.1 902 38.4
TPR.G38733 Trifolium pratense HOM05D003469 ORTHO05D004084 3.6e-157 560.1 906 37.1
Medtr4g079390 Medicago truncatula HOM05D003469 ORTHO05D004084 4.0e-156 556.6 905 36.9
Manes.06G016500 Manihot esculenta HOM05D003469 ORTHO05D004084 4.4e-155 553.1 849 42.6
Medtr4g074860 Medicago truncatula HOM05D003469 ORTHO05D004084 8.2e-154 548.9 921 37.1
DCAR_001477 Daucus carota HOM05D003469 ORTHO05D004084 5.9e-152 542.7 927 37.9
Aqoxy4G02849 Aquilegia oxysepala HOM05D003469 ORTHO05D004084 8.5e-151 538.9 895 36.9
Nitab4.5_0005224g0040 Nicotiana tabacum HOM05D003469 ORTHO05D004084 2.6e-147 527.3 893 36.5
Peaxi162Scf00015g00107 Petunia axillaris HOM05D003469 ORTHO05D004084 7.7e-144 515.8 867 41.2
Nitab4.5_0002906g0070 Nicotiana tabacum HOM05D003469 ORTHO05D004084 1.3e-143 515.0 887 36.4
QL09p054764 Quercus lobata HOM05D003469 ORTHO05D004084 5.5e-142 509.6 630 44.9
vmacro00914 Vaccinium macrocarpon HOM05D003469 ORTHO05D004084 1.2e-139 501.9 1355 29.5
RcHm_v2.0_Chr6g0293861 Rosa chinensis HOM05D003469 ORTHO05D004084 1.6e-136 491.5 901 36.2
Potri.013G128900 Populus trichocarpa HOM05D003469 ORTHO05D004084 1.7e-135 488.0 874 37.9
Nitab4.5_0002354g0130 Nicotiana tabacum HOM05D003469 ORTHO05D004084 3.8e-135 486.9 914 38.5
FAN15G0576 Fragaria x ananassa HOM05D003469 ORTHO05D004084 3.1e-132 477.2 902 36.0
FAN24G3399 Fragaria x ananassa HOM05D003469 ORTHO05D004084 2.0e-131 474.6 902 35.6
Dinv15687 Davidia involucrata HOM05D003469 ORTHO05D004084 7.5e-131 472.6 904 35.4
Lj9A422T76 Lonicera japonica HOM05D003469 ORTHO05D004084 1.1e-129 468.8 775 41.4
CDE05G0531 Ceratophyllum demersum HOM05D003469 ORTHO05D004084 4.1e-129 466.8 483 51.3
CBR_g36749 Chara braunii HOM05D003469 ORTHO05D004084 3.3e-126 457.2 1240 29.3
Zm00001eb171180 Zea mays HOM05D003469 ORTHO05D004084 1.1e-124 452.2 743 36.3
FvH4_2g25610 Fragaria vesca HOM05D003469 ORTHO05D004084 1.5e-123 448.4 902 34.7
ATR1089G047 Amborella trichopoda HOM05D003469 ORTHO05D004084 2.6e-123 447.6 897 38.6
FAN27G0386 Fragaria x ananassa HOM05D003469 ORTHO05D004084 2.6e-123 447.6 880 35.3
TAR633G1289 Trochodendron aralioides HOM05D003469 ORTHO05D004084 1.9e-121 441.4 424 52.8
AUR62039415 Chenopodium quinoa HOM05D003469 ORTHO05D004084 9.5e-118 429.1 637 39.9
A06p13570 Brassica napus HOM05D003469 ORTHO05D004084 2.8e-117 427.6 874 32.8
BraA06t24509Z Brassica rapa HOM05D003469 ORTHO05D004084 2.8e-117 427.6 874 32.8
BolC4t22588H Brassica oleracea HOM05D003469 ORTHO05D004084 6.2e-117 426.4 872 33.1
C05p16090 Brassica napus HOM05D003469 ORTHO05D004084 1.1e-116 425.6 874 33.1
BolC5t30309H Brassica oleracea HOM05D003469 ORTHO05D004084 1.4e-116 425.2 874 33.0
BcaC05g25689 Brassica carinata HOM05D003469 ORTHO05D004084 1.8e-116 424.9 874 33.1
BcaB07g34024 Brassica carinata HOM05D003469 ORTHO05D004084 2.0e-115 421.4 875 33.9
THA.LOC104807542 Tarenaya hassleriana HOM05D003469 ORTHO05D004084 8.3e-114 416.0 975 31.3
Carub.0001s1741 Capsella rubella HOM05D003469 ORTHO05D004084 1.4e-113 415.2 880 33.3
BcaC02g11929 Brassica carinata HOM05D003469 ORTHO05D004084 2.1e-112 411.4 872 32.3
Ciclev10019721m.g Citrus clementina HOM05D003469 ORTHO05D004084 7.8e-112 409.5 491 46.2
TPR.G32330 Trifolium pratense HOM05D003469 ORTHO05D004084 7.8e-112 409.5 898 31.4
Haze_14033 Corylus avellana HOM05D003469 ORTHO05D004084 3.0e-111 407.5 587 41.1
AT1G17680 Arabidopsis thaliana HOM05D003469 ORTHO05D004084 6.6e-111 406.4 882 33.0
Thhalv10006758m.g Eutrema salsugineum HOM05D003469 ORTHO05D004084 1.1e-110 405.6 873 32.1
C04p09790 Brassica napus HOM05D003469 ORTHO05D004084 5.6e-110 403.3 890 35.7
AL1G30030 Arabidopsis lyrata HOM05D003469 ORTHO05D004084 1.1e-108 399.1 873 32.6
Ciclev10026956m.g Citrus clementina HOM05D003469 ORTHO05D004084 4.9e-106 390.2 884 31.0
Aa31LG7G2510 Aethionema arabicum HOM05D003469 ORTHO05D004084 3.3e-102 377.5 877 31.4
THA.LOC104800339 Tarenaya hassleriana HOM05D003469 ORTHO05D004084 1.3e-95 355.5 908 30.8
Ah.15g095790 Amaranthus hybridus HOM05D003469 ORTHO05D004084 9.6e-94 349.4 1398 24.5
Ca_19034_v3 Cicer arietinum L. HOM05D003469 ORTHO05D004084 1.1e-92 345.9 345 51.0
PGSC0003DMG400033134 Solanum tuberosum HOM05D003469 ORTHO05D004084 2.1e-88 331.6 328 52.1
Sp1g15780 Schrenkiella parvula HOM05D003469 ORTHO05D004084 7.6e-83 313.2 444 42.1
MD17G1141100 Malus domestica HOM05D003469 ORTHO05D004084 3.5e-80 304.3 321 48.3
TAR633G1719 Trochodendron aralioides HOM05D003469 ORTHO05D004084 4.5e-75 287.3 358 45.0
SEGI_08666 Sequoiadendron giganteum HOM05D003469 ORTHO05D004084 1.0e-71 276.2 181 72.4
SHI03012 Sapria himalayana HOM05D003469 ORTHO05D004084 3.0e-71 274.6 289 51.2
Oeu019664.1 Olea europaea HOM05D003469 ORTHO05D004084 3.3e-70 271.2 368 40.5
CDE05G3544 Ceratophyllum demersum HOM05D003469 ORTHO05D004084 3.6e-64 251.1 364 40.7
EL10Ac5g10434 Beta vulgaris HOM05D003469 ORTHO05D004084 5.1e-63 247.3 645 32.1
MD17G1141000 Malus domestica HOM05D003469 ORTHO05D004084 1.8e-60 238.8 417 43.2
C04p00480 Brassica napus HOM05D003469 ORTHO05D004084 2.1e-56 225.3 200 54.0
HanXRQChr13g0406831 Helianthus annuus HOM05D003469 ORTHO05D004084 1.1e-52 213.0 202 50.5
FvH4_6g38050 Fragaria vesca HOM05D003469 ORTHO05D004084 1.9e-49 202.2 815 24.2
Ca_16139_v3 Cicer arietinum L. HOM05D003469 ORTHO05D004084 4.2e-49 201.1 361 34.6
FvH4_6g38030 Fragaria vesca HOM05D003469 ORTHO05D004084 3.6e-48 198.0 322 35.7
COL.COLO4_25121 Corchorus olitorius HOM05D003469 ORTHO05D004084 1.0e-47 196.4 366 35.2
Potri.013G129500 Populus trichocarpa HOM05D003469 ORTHO05D000003 3.9e-47 194.5 334 36.8
Cre10.g464950 Chlamydomonas reinhardtii HOM05D003469 ORTHO05D004084 6.7e-47 193.7 302 38.7
FAN20G2279 Fragaria x ananassa HOM05D003469 ORTHO05D004084 3.7e-45 188.0 180 53.3
Ciclev10020572m.g Citrus clementina HOM05D003469 ORTHO05D004084 1.3e-42 179.5 334 46.7
Oeu035042.1 Olea europaea HOM05D003469 ORTHO05D004084 5.0e-42 177.6 249 43.8
SEGI_05114 Sequoiadendron giganteum HOM05D003469 ORTHO05D004084 8.5e-42 176.8 151 61.6
AUR62000094 Chenopodium quinoa HOM05D003469 ORTHO05D004084 9.4e-41 173.3 462 27.7
QL09p054785 Quercus lobata HOM05D003469 ORTHO05D004084 1.8e-39 169.1 186 50.0
Medtr4g074690 Medicago truncatula HOM05D003469 ORTHO05D004084 2.0e-38 165.6 227 40.1
SEGI_26656 Sequoiadendron giganteum HOM05D003469 ORTHO05D000001 9.7e-38 163.3 129 60.5
vmacro23125 Vaccinium macrocarpon HOM05D003469 ORTHO05D004084 9.7e-38 163.3 423 28.1
Cpa.g.sc21.245 Carica papaya HOM05D003469 ORTHO05D004084 1.4e-36 159.5 366 30.1
COL.COLO4_25120 Corchorus olitorius HOM05D003469 ORTHO05D004084 1.4e-36 159.5 347 35.7
Thhalv10002713m.g Eutrema salsugineum HOM05D003469 ORTHO05D004084 2.0e-35 155.6 143 56.6
SHI03015 Sapria himalayana HOM05D003469 ORTHO05D004084 3.2e-33 148.3 250 34.0
Sp4g05240 Schrenkiella parvula HOM05D000751 ORTHO05D005618 3.2e-33 148.3 605 24.0
Sabra13G0107500 Salix brachista HOM05D000001 ORTHO05D000003 4.9e-29 134.4 218 40.4
Psat0s3379g0080 Pisum sativum HOM05D003469 ORTHO05D004084 6.6e-26 124.0 206 36.9
CARHR018280 Cardamine hirsuta HOM05D003469 ORTHO05D004084 1.2e-24 119.8 475 24.4
Ca_16137_v3 Cicer arietinum L. HOM05D003469 ORTHO05D004084 6.1e-24 117.5 181 37.6
ATR0002G001 Amborella trichopoda HOM05D003469 ORTHO05D004084 1.4e-23 116.3 84 60.7
BcaC02g12574 Brassica carinata HOM05D003469 ORTHO05D004084 1.8e-23 115.9 106 56.6
Actinidia02459 Actinidia chinensis HOM05D003469 ORTHO05D004084 6.8e-23 114.0 125 44.8
Cpa.g.sc21.244 Carica papaya HOM05D003469 ORTHO05D004084 4.4e-22 111.3 94 60.6
ECA232G2749 Erigeron canadensis HOM05D001807 ORTHO05D002044 7.5e-22 110.5 93 55.9
Aa31LG2G17580 Aethionema arabicum HOM05D003469 ORTHO05D004084 6.3e-21 107.5 83 59.0
Haze_14035 Corylus avellana HOM05D003469 ORTHO05D004084 5.9e-19 100.9 232 32.8
Rhsim02G0229800 Rhododendron simsii HOM05D000151 ORTHO05D000074 3.9e-18 98.2 88 58.0
FAN20G1461 Fragaria x ananassa HOM05D003469 ORTHO05D004084 1.6e-16 92.8 122 41.0
PRCOL_00004204 Prasinoderma coloniale HOM05D003469 ORTHO05D004084 5.2e-15 87.8 894 25.6
Cpa.g.sc21.247 Carica papaya HOM05D003469 ORTHO05D004084 1.7e-13 82.8 135 37.8
SEGI_39938 Sequoiadendron giganteum HOM05D003469 ORTHO05D004084 4.9e-13 81.3 102 43.1
SHI03013 Sapria himalayana HOM05D003469 ORTHO05D004084 2.4e-12 79.0 97 40.2
AagrBONN_evm.TU.Sc2ySwM_362.2853 Anthoceros agrestis HOM05D003469 ORTHO05D004084 1.2e-11 76.6 56 62.5
Ca_19033_v3 Cicer arietinum L. HOM05D003469 ORTHO05D004084 7.8e-11 73.9 61 54.1
C04p00500 Brassica napus HOM05D003469 ORTHO05D004084 3.0e-10 72.0 270 28.9
Haze_14034 Corylus avellana HOM05D003469 ORTHO05D004084 3.9e-10 71.6 86 41.9
Psat0s3379g0040 Pisum sativum HOM05D003469 ORTHO05D004084 1.1e-09 70.1 106 39.6
MCO03G148 Micromonas commoda HOM05D003469 ORTHO05D004084 4.3e-09 68.2 1028 23.6
Sp4g05220 Schrenkiella parvula HOM05D003469 ORTHO05D004084 5.6e-09 67.8 35 80.0
Lj9A422T78 Lonicera japonica HOM05D003469 ORTHO05D029064 9.5e-09 67.0 90 47.8
Glyma.07G124800 Glycine max HOM05D003469 ORTHO05D004084 2.3e-07 62.4 151 29.8
SEGI_31377 Sequoiadendron giganteum HOM05D003469 ORTHO05D029064 4.0e-07 61.6 42 71.4
Lsat_1_v5_gn_0_35341 Lactuca sativa HOM05D003469 ORTHO05D004084 5.2e-07 61.2 81 39.5
Oeu026515.1 Olea europaea HOM05D003469 ORTHO05D004084 1.5e-06 59.7 62 45.2
Ca_16140_v3 Cicer arietinum L. HOM05D003469 ORTHO05D004084 3.4e-06 58.5 161 27.3
AagrBONN_evm.TU.Sc2ySwM_362.2852 Anthoceros agrestis HOM05D003469 ORTHO05D004084 9.8e-06 57.0 117 35.0


User provided reference genes

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