Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c7_7340 Physcomitrium patens HOM05D006300 ORTHO05D007623 0.0e+00 1296.6 751 100.0
Mapoly0001s0383 Marchantia polymorpha HOM05D006300 ORTHO05D007623 4.7e-122 443.0 916 38.9
AagrBONN_evm.TU.Sc2ySwM_228.500 Anthoceros agrestis HOM05D006300 ORTHO05D007623 6.4e-87 326.2 374 55.3
Nn6g35476 Nelumbo nucifera HOM05D006300 ORTHO05D007623 1.9e-51 208.4 172 62.2
MBI01_g01269_MAGBIO Magnolia biondii HOM05D006300 ORTHO05D007623 2.5e-51 208.0 174 63.8
MBI04_g34125_MAGBIO Magnolia biondii HOM05D006300 ORTHO05D007623 2.1e-50 204.9 167 64.7
TAR636G0696 Trochodendron aralioides HOM05D006300 ORTHO05D007623 2.1e-50 204.9 187 59.9
TAR624G0799 Trochodendron aralioides HOM05D006300 ORTHO05D007623 6.3e-50 203.4 168 61.9
Nn8g38867 Nelumbo nucifera HOM05D006300 ORTHO05D007623 1.4e-49 202.2 174 61.5
TAR383G0464 Trochodendron aralioides HOM05D006300 ORTHO05D007623 3.1e-49 201.1 171 62.0
CDE06G2767 Ceratophyllum demersum HOM05D006300 ORTHO05D007623 5.3e-49 200.3 169 66.3
CDE04G2687 Ceratophyllum demersum HOM05D006300 ORTHO05D007623 1.2e-48 199.1 169 66.3
PGR102G2043 Punica granatum HOM05D006300 ORTHO05D007623 1.2e-48 199.1 168 63.7
QL05p012743 Quercus lobata HOM05D006300 ORTHO05D007623 2.0e-48 198.4 168 61.9
CANSAT56G1450 Cannabis sativa HOM05D006300 ORTHO05D007623 2.6e-48 198.0 168 62.5
Dinv30382 Davidia involucrata HOM05D006300 ORTHO05D007623 2.6e-48 198.0 168 62.5
Actinidia21757 Actinidia chinensis HOM05D006300 ORTHO05D007623 1.3e-47 195.7 168 61.9
Duzib160G0060 Durio zibethinus HOM05D006300 ORTHO05D007623 1.7e-47 195.3 169 61.5
Duzib192G0510 Durio zibethinus HOM05D006300 ORTHO05D007623 2.9e-47 194.5 169 60.9
GSVIVG01016850001 Vitis vinifera HOM05D006300 ORTHO05D007623 2.9e-47 194.5 171 62.6
Rhsim08G0233100 Rhododendron simsii HOM05D006300 ORTHO05D007623 5.0e-47 193.7 169 62.7
Thecc.06G111200 Theobroma cacao HOM05D006300 ORTHO05D007623 8.5e-47 193.0 169 60.9
CAN.G1389.16 Capsicum annuum HOM05D006300 ORTHO05D007623 1.1e-46 192.6 168 61.9
Gohir.D03G056300 Gossypium hirsutum HOM05D006300 ORTHO05D007623 1.1e-46 192.6 167 61.7
Gorai.003G059300 Gossypium raimondii HOM05D006300 ORTHO05D007623 1.1e-46 192.6 167 61.7
Manes.11G026800 Manihot esculenta HOM05D006300 ORTHO05D007623 1.1e-46 192.6 167 61.7
CiPaw.01G225300 Carya illinoinensis HOM05D006300 ORTHO05D007623 2.5e-46 191.4 164 61.6
COL.COLO4_30656 Corchorus olitorius HOM05D006300 ORTHO05D007623 2.5e-46 191.4 169 59.8
Solyc03g121560.3 Solanum lycopersicum HOM05D006300 ORTHO05D007623 3.2e-46 191.0 163 63.2
Sopen03g040370 Solanum pennellii HOM05D006300 ORTHO05D007623 3.2e-46 191.0 163 63.2
vmacro18787 Vaccinium macrocarpon HOM05D006300 ORTHO05D007623 5.5e-46 190.3 161 64.6
Aqoxy7G01215 Aquilegia oxysepala HOM05D006300 ORTHO05D007623 7.2e-46 189.9 172 58.1
Gohir.A02G115200 Gossypium hirsutum HOM05D006300 ORTHO05D007623 9.3e-46 189.5 169 60.4
PSO210G0359 Papaver somniferum HOM05D006300 ORTHO05D007623 9.3e-46 189.5 169 60.9
arahy.Tifrunner.gnm1.ann1.X9C73S Arachis hypogaea HOM05D006300 ORTHO05D007623 2.1e-45 188.3 191 57.1
Lsat_1_v5_gn_4_95241 Lactuca sativa HOM05D006300 ORTHO05D007623 2.1e-45 188.3 170 58.8
Manes.04G139300 Manihot esculenta HOM05D006300 ORTHO05D007623 2.1e-45 188.3 160 62.5
PSO210G2046 Papaver somniferum HOM05D006300 ORTHO05D007623 2.1e-45 188.3 169 60.4
Prupe.3G050100 Prunus persica HOM05D006300 ORTHO05D007623 2.1e-45 188.3 168 60.7
FvH4_6g33270 Fragaria vesca HOM05D006300 ORTHO05D007623 2.7e-45 188.0 168 61.9
FAN14G0371 Fragaria x ananassa HOM05D006300 ORTHO05D007623 2.7e-45 188.0 168 61.9
RcHm_v2.0_Chr2g0142971 Rosa chinensis HOM05D006300 ORTHO05D007623 2.7e-45 188.0 168 61.9
Dinv37916 Davidia involucrata HOM05D006300 ORTHO05D007623 3.6e-45 187.6 160 62.5
ATR0026G017 Amborella trichopoda HOM05D006300 ORTHO05D007623 4.6e-45 187.2 189 55.0
Ah.15g094170 Amaranthus hybridus HOM05D006300 ORTHO05D007623 6.1e-45 186.8 168 60.1
Glyma.15G023900 Glycine max HOM05D006300 ORTHO05D007623 6.1e-45 186.8 171 62.0
Potri.003G038600 Populus trichocarpa HOM05D006300 ORTHO05D007623 7.9e-45 186.4 168 59.5
arahy.Tifrunner.gnm1.ann1.F4I7X2 Arachis hypogaea HOM05D006300 ORTHO05D007623 1.0e-44 186.0 184 58.2
FAN02G1261 Fragaria x ananassa HOM05D006300 ORTHO05D007623 1.0e-44 186.0 165 62.4
MELO3C024394.2 Cucumis melo HOM05D006300 ORTHO05D007623 1.3e-44 185.7 166 60.2
CsaV3_7G034830 Cucumis sativus L. HOM05D006300 ORTHO05D007623 1.3e-44 185.7 166 60.2
Medtr2g100100 Medicago truncatula HOM05D006300 ORTHO05D007623 3.9e-44 184.1 190 57.4
Cc04_g01980 Coffea canephora HOM05D006300 ORTHO05D007623 6.7e-44 183.3 168 57.1
BcaB07g34023 Brassica carinata HOM05D006300 ORTHO05D007623 8.7e-44 183.0 168 57.7
BcaC05g25688 Brassica carinata HOM05D006300 ORTHO05D007623 8.7e-44 183.0 168 57.7
C05p16080 Brassica napus HOM05D006300 ORTHO05D007623 8.7e-44 183.0 168 57.7
BolC5t30308H Brassica oleracea HOM05D006300 ORTHO05D007623 8.7e-44 183.0 168 57.7
PGR102G2710 Punica granatum HOM05D006300 ORTHO05D007623 8.7e-44 183.0 168 60.1
AT1G17665 Arabidopsis thaliana HOM05D006300 ORTHO05D007623 1.1e-43 182.6 170 59.4
HanXRQChr09g0276431 Helianthus annuus HOM05D006300 ORTHO05D007623 1.5e-43 182.2 164 59.8
THA.LOC104812213 Tarenaya hassleriana HOM05D006300 ORTHO05D007623 2.5e-43 181.4 257 45.9
MD17G1174400 Malus domestica HOM05D006300 ORTHO05D007623 3.3e-43 181.0 262 45.8
Carub.0001s1740 Capsella rubella HOM05D006300 ORTHO05D007623 4.3e-43 180.6 170 59.4
Duzib235G0903 Durio zibethinus HOM05D006300 ORTHO05D007623 4.3e-43 180.6 169 58.0
Thhalv10008108m.g Eutrema salsugineum HOM05D006300 ORTHO05D007623 4.3e-43 180.6 168 57.7
Sp1g15770 Schrenkiella parvula HOM05D006300 ORTHO05D007623 4.3e-43 180.6 168 57.1
AL1G29990 Arabidopsis lyrata HOM05D006300 ORTHO05D007623 7.4e-43 179.9 168 57.7
Gohir.D10G061000 Gossypium hirsutum HOM05D006300 ORTHO05D007623 7.4e-43 179.9 169 57.4
Migut.I01022 Erythranthe guttata HOM05D006300 ORTHO05D007623 9.7e-43 179.5 163 60.1
FAN05G1138 Fragaria x ananassa HOM05D006300 ORTHO05D007623 1.3e-42 179.1 160 61.9
Glyma.13G350600 Glycine max HOM05D006300 ORTHO05D007623 1.6e-42 178.7 172 57.6
Lj3g0013508 Lotus japonicus HOM05D006300 ORTHO05D007623 2.2e-42 178.3 173 60.7
CARHR018270 Cardamine hirsuta HOM05D006300 ORTHO05D007623 2.8e-42 177.9 170 58.8
TPR.G6530 Trifolium pratense HOM05D006300 ORTHO05D007623 2.8e-42 177.9 181 57.5
CiPaw.02G140400 Carya illinoinensis HOM05D006300 ORTHO05D007623 3.7e-42 177.6 164 57.9
Phvul.005G159900 Phaseolus vulgaris HOM05D006300 ORTHO05D007623 3.7e-42 177.6 165 61.2
SalBow6G0902 Salvia bowleyana HOM05D006300 ORTHO05D007623 3.7e-42 177.6 160 60.6
A06p13560 Brassica napus HOM05D006300 ORTHO05D007623 4.8e-42 177.2 160 58.8
BraA06t24508Z Brassica rapa HOM05D006300 ORTHO05D007623 4.8e-42 177.2 160 58.8
Gohir.A10G059500 Gossypium hirsutum HOM05D006300 ORTHO05D007623 4.8e-42 177.2 169 56.8
Aa31LG7G2500 Aethionema arabicum HOM05D006300 ORTHO05D007623 8.2e-42 176.4 160 60.0
ECA232G1041 Erigeron canadensis HOM05D000140 ORTHO05D000087 1.4e-41 175.6 167 57.5
AUR62038132 Chenopodium quinoa HOM05D000073 ORTHO05D000033 1.2e-40 172.6 151 59.6
Gorai.011G065200 Gossypium raimondii HOM05D006300 ORTHO05D007623 1.2e-40 172.6 160 58.1
Haze_15947 Corylus avellana HOM05D006300 ORTHO05D007623 2.0e-40 171.8 201 49.3
DCAR_007620 Daucus carota HOM05D006300 ORTHO05D007623 2.0e-40 171.8 160 58.1
VMungo1080G1020 Vigna mungo HOM05D006300 ORTHO05D007623 4.5e-40 170.6 158 62.0
Hund20857 Selenicereus undatus HOM05D006300 ORTHO05D007623 7.7e-40 169.9 204 49.0
Ciclev10025783m.g Citrus clementina HOM05D006300 ORTHO05D007623 1.7e-39 168.7 185 53.0
Lalb_Chr24g0396361 Lupinus albus HOM05D006300 ORTHO05D007623 2.2e-39 168.3 169 56.2
MSTRG.10986 Avicennia marina HOM05D006300 ORTHO05D007623 8.5e-39 166.4 167 56.9
Nitab4.5_0001295g0030 Nicotiana tabacum HOM05D006300 ORTHO05D007623 8.5e-39 166.4 147 61.9
Sabra03G0025100 Salix brachista HOM05D006300 ORTHO05D007623 2.5e-38 164.9 205 48.3
Psat4g199680 Pisum sativum HOM05D006300 ORTHO05D007623 4.2e-38 164.1 164 56.7
Medtr8g016260 Medicago truncatula HOM05D006300 ORTHO05D007623 5.7e-35 153.7 163 52.1
Atru.chr1.3720 Acer truncatum HOM05D001008 ORTHO05D003146 7.4e-35 153.3 117 66.7
Nitab4.5_0007429g0010 Nicotiana tabacum HOM05D006300 ORTHO05D007623 1.4e-33 149.1 116 68.1
Oeu039964.1 Olea europaea HOM05D006300 ORTHO05D007623 1.8e-33 148.7 125 60.8
Peaxi162Scf00038g01529 Petunia axillaris HOM05D006300 ORTHO05D007623 2.4e-33 148.3 141 60.3
ClCG09G000650 Citrullus lanatus HOM05D006300 ORTHO05D007623 3.4e-32 144.4 116 65.5
FAN09G0301 Fragaria x ananassa HOM05D006300 ORTHO05D007623 1.0e-31 142.9 134 59.7
Ca_28052_v3 Cicer arietinum L. HOM05D006300 ORTHO05D007623 6.5e-31 140.2 123 61.0
Ca_30533_v3 Cicer arietinum L. HOM05D006300 ORTHO05D007623 6.5e-31 140.2 123 61.0
SGA_v2.0_scaffold127G34049 Striga asiatica HOM05D006300 ORTHO05D007623 3.6e-29 134.4 132 56.8
HPP92_003967 Vanilla planifolia HOM05D006300 ORTHO05D007623 2.6e-27 128.3 125 58.4
TPR.G7922 Trifolium pratense HOM05D006300 ORTHO05D007623 8.5e-23 113.2 116 58.6
Cpa.g.sc25.55 Carica papaya HOM05D006300 ORTHO05D007623 4.2e-22 110.9 129 48.8
Zm00001eb337890 Zea mays HOM05D006300 ORTHO05D007623 1.4e-20 105.9 169 36.7
PGSC0003DMG400002589 Solanum tuberosum HOM05D006300 ORTHO05D007623 6.7e-20 103.6 84 63.1
Os01g0197400 Oryza sativa ssp. japonica HOM05D006300 ORTHO05D007623 8.8e-20 103.2 172 37.8
arahy.Tifrunner.gnm1.ann1.046NH9 Arachis hypogaea HOM05D006300 ORTHO05D007623 1.3e-18 99.4 125 50.4
CSS0024626 Camellia sinensis var. sinensis HOM05D006300 ORTHO05D007623 1.5e-14 85.9 64 70.3
COL.COLO4_30657 Corchorus olitorius HOM05D001008 ORTHO05D007623 4.2e-14 84.3 71 63.4
arahy.Tifrunner.gnm1.ann1.Z85M5C Arachis hypogaea HOM05D006300 ORTHO05D007623 8.0e-13 80.1 109 48.6
arahy.Tifrunner.gnm1.ann1.RJ4DBV Arachis hypogaea HOM05D006300 ORTHO05D007623 9.1e-09 66.6 76 57.9
Mapoly4117s0001 Marchantia polymorpha HOM05D067653 ORTHO05D007623 2.3e-07 62.0 330 28.5
Sed0006903 Sechium edule HOM05D006300 ORTHO05D007623 1.1e-06 59.7 58 50.0
Mapoly0066s0001 Marchantia polymorpha HOM05D067653 ORTHO05D007623 3.2e-06 58.2 95 42.1


User provided reference genes

Program Settings