Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c7_3940 Physcomitrium patens HOM05D006277 ORTHO05D007673 5.0e-173 611.3 378 100.0
Pp3c11_21910 Physcomitrium patens HOM05D006277 ORTHO05D007673 1.3e-96 357.5 367 63.2
Mapoly0143s0029 Marchantia polymorpha HOM05D006277 ORTHO05D007673 2.5e-39 167.2 166 57.8
AagrBONN_evm.TU.Sc2ySwM_362.1883 Anthoceros agrestis HOM05D006277 ORTHO05D007673 6.2e-38 162.5 190 52.1
BcaNung02006 Brassica carinata HOM05D006277 ORTHO05D007673 6.4e-35 152.5 204 47.5
Aa31LG11G3890 Aethionema arabicum HOM05D006277 ORTHO05D007673 1.4e-34 151.4 190 46.3
CARHR188820 Cardamine hirsuta HOM05D006277 ORTHO05D007673 1.4e-34 151.4 188 47.3
Thhalv10004336m.g Eutrema salsugineum HOM05D006277 ORTHO05D007673 4.1e-34 149.8 215 46.5
Phvul.009G040200 Phaseolus vulgaris HOM05D006277 ORTHO05D007673 5.4e-34 149.4 249 39.8
Sc19g0000370 Simmondsia chinensis HOM05D006277 ORTHO05D007673 7.0e-34 149.1 223 42.2
arahy.Tifrunner.gnm1.ann1.NYS2P6 Arachis hypogaea HOM05D006277 ORTHO05D007673 1.2e-33 148.3 210 46.2
CANSAT21G1902 Cannabis sativa HOM05D006277 ORTHO05D007673 1.6e-33 147.9 214 43.5
HanXRQChr04g0117941 Helianthus annuus HOM05D006277 ORTHO05D007673 1.6e-33 147.9 217 41.9
arahy.Tifrunner.gnm1.ann1.VE49IY Arachis hypogaea HOM05D006277 ORTHO05D007673 2.0e-33 147.5 210 45.2
Ca_16838_v3 Cicer arietinum L. HOM05D006277 ORTHO05D007673 2.0e-33 147.5 206 46.1
arahy.Tifrunner.gnm1.ann1.YJ5L14 Arachis hypogaea HOM05D006277 ORTHO05D007673 2.7e-33 147.1 210 45.7
EL10Ac3g05132 Beta vulgaris HOM05D006277 ORTHO05D007673 2.7e-33 147.1 202 44.1
THA.LOC104803317 Tarenaya hassleriana HOM05D006277 ORTHO05D007673 3.5e-33 146.7 265 40.8
Dinv29192 Davidia involucrata HOM05D006277 ORTHO05D007673 4.6e-33 146.4 243 42.0
PSO384G3009 Papaver somniferum HOM05D006277 ORTHO05D007673 4.6e-33 146.4 253 41.5
Sp2g22750 Schrenkiella parvula HOM05D006277 ORTHO05D007673 4.6e-33 146.4 206 45.6
AT5G24630 Arabidopsis thaliana HOM05D006277 ORTHO05D007673 6.0e-33 146.0 188 48.4
Carub.0006s2249 Capsella rubella HOM05D006277 ORTHO05D007673 6.0e-33 146.0 183 47.5
Nitab4.5_0000021g0190 Nicotiana tabacum HOM05D006277 ORTHO05D007673 6.0e-33 146.0 252 40.9
A06p35430 Brassica napus HOM05D006277 ORTHO05D007673 7.8e-33 145.6 202 46.0
BraA06t26466Z Brassica rapa HOM05D006277 ORTHO05D007673 7.8e-33 145.6 202 46.0
AL6G36240 Arabidopsis lyrata HOM05D006277 ORTHO05D007673 1.0e-32 145.2 185 48.6
MD01G1231400 Malus domestica HOM05D006277 ORTHO05D007673 1.0e-32 145.2 293 38.9
Nitab4.5_0007121g0020 Nicotiana tabacum HOM05D006277 ORTHO05D007673 1.0e-32 145.2 217 44.2
TPR.G35912 Trifolium pratense HOM05D006277 ORTHO05D007673 1.0e-32 145.2 210 45.2
C07p43080 Brassica napus HOM05D006277 ORTHO05D007673 1.3e-32 144.8 216 44.9
SEGI_26440 Sequoiadendron giganteum HOM05D006277 ORTHO05D007673 1.7e-32 144.4 228 43.0
PGSC0003DMG400000548 Solanum tuberosum HOM05D006277 ORTHO05D007673 1.7e-32 144.4 218 44.0
BolC7t44835H Brassica oleracea HOM05D006277 ORTHO05D007673 2.3e-32 144.1 216 44.9
Glyma.04G225700 Glycine max HOM05D006277 ORTHO05D007673 2.3e-32 144.1 268 39.6
VMungo1309G1324 Vigna mungo HOM05D006277 ORTHO05D007673 2.3e-32 144.1 286 37.4
PSO063G0207 Papaver somniferum HOM05D006277 ORTHO05D007673 3.0e-32 143.7 207 46.4
Ah.13g071040 Amaranthus hybridus HOM05D006277 ORTHO05D008078 5.0e-32 142.9 171 45.6
Atru.chr12.2501 Acer truncatum HOM05D006277 ORTHO05D007673 8.6e-32 142.1 198 43.9
Glyma.06G139100 Glycine max HOM05D006277 ORTHO05D007673 8.6e-32 142.1 285 37.5
MD07G1303400 Malus domestica HOM05D006277 ORTHO05D007673 8.6e-32 142.1 270 39.6
Sed0010003 Sechium edule HOM05D006277 ORTHO05D007673 8.6e-32 142.1 181 45.9
Atru.chr12.2525 Acer truncatum HOM05D006277 ORTHO05D007673 1.5e-31 141.4 201 43.3
ATR0626G063 Amborella trichopoda HOM05D006277 ORTHO05D007673 1.9e-31 141.0 211 42.7
Hund09753 Selenicereus undatus HOM05D006277 ORTHO05D007673 1.9e-31 141.0 171 46.2
PSO170G0956 Papaver somniferum HOM05D006277 ORTHO05D007673 2.5e-31 140.6 182 48.4
Solyc03g079950.4 Solanum lycopersicum HOM05D006277 ORTHO05D007673 3.3e-31 140.2 185 46.5
CiPaw.06G038300 Carya illinoinensis HOM05D006277 ORTHO05D007673 4.3e-31 139.8 208 42.8
GSVIVG01038680001 Vitis vinifera HOM05D006277 ORTHO05D007673 4.3e-31 139.8 231 42.4
CAN.G303.58 Capsicum annuum HOM05D006277 ORTHO05D007673 5.6e-31 139.4 219 41.6
Gohir.A08G106400 Gossypium hirsutum HOM05D006277 ORTHO05D007673 7.3e-31 139.0 214 40.2
ECA238G0260 Erigeron canadensis HOM05D006277 ORTHO05D007673 9.5e-31 138.7 257 37.7
Os02g0147100 Oryza sativa ssp. japonica HOM05D006277 ORTHO05D007673 9.5e-31 138.7 145 51.7
Sopen03g027470 Solanum pennellii HOM05D006277 ORTHO05D007673 9.5e-31 138.7 233 41.6
Psat6g243000 Pisum sativum HOM05D006277 ORTHO05D007673 1.2e-30 138.3 205 46.8
SalBow4G0692 Salvia bowleyana HOM05D006277 ORTHO05D007673 1.2e-30 138.3 234 39.3
HPP92_017116 Vanilla planifolia HOM05D006277 ORTHO05D007673 1.2e-30 138.3 198 43.4
QL09p006002 Quercus lobata HOM05D006277 ORTHO05D007673 1.6e-30 137.9 215 44.2
HPP92_017121 Vanilla planifolia HOM05D006277 ORTHO05D007673 1.6e-30 137.9 133 51.1
Migut.F00123 Erythranthe guttata HOM05D006277 ORTHO05D007673 2.1e-30 137.5 267 37.1
Lj1g0014471 Lotus japonicus HOM05D006277 ORTHO05D007673 2.1e-30 137.5 288 37.2
Medtr3g093330 Medicago truncatula HOM05D006277 ORTHO05D007673 2.8e-30 137.1 247 38.5
AUR62005949 Chenopodium quinoa HOM05D006277 ORTHO05D007673 3.6e-30 136.7 271 35.4
COL.COLO4_14399 Corchorus olitorius HOM05D006277 ORTHO05D007673 3.6e-30 136.7 211 43.1
Duzib205G1288 Durio zibethinus HOM05D006277 ORTHO05D007673 3.6e-30 136.7 223 40.8
FAN10G1913 Fragaria x ananassa HOM05D006277 ORTHO05D007673 3.6e-30 136.7 257 40.1
FAN10G3443 Fragaria x ananassa HOM05D006277 ORTHO05D007673 3.6e-30 136.7 257 40.1
Gorai.004G126300 Gossypium raimondii HOM05D006277 ORTHO05D007673 3.6e-30 136.7 235 38.3
Thecc.03G212000 Theobroma cacao HOM05D006277 ORTHO05D007673 3.6e-30 136.7 219 42.0
TAR626G1328 Trochodendron aralioides HOM05D006277 ORTHO05D007673 3.6e-30 136.7 247 39.7
CSS0047728 Camellia sinensis var. sinensis HOM05D006277 ORTHO05D007673 4.7e-30 136.3 139 48.2
MSTRG.26953 Avicennia marina HOM05D006277 ORTHO05D007673 6.2e-30 136.0 229 39.7
Manes.18G108300 Manihot esculenta HOM05D006277 ORTHO05D007673 6.2e-30 136.0 222 41.9
Potri.012G004700 Populus trichocarpa HOM05D006277 ORTHO05D007673 8.1e-30 135.6 219 42.5
FvH4_7g33320 Fragaria vesca HOM05D006277 ORTHO05D007673 1.1e-29 135.2 215 44.2
Lalb_Chr23g0272041 Lupinus albus HOM05D006277 ORTHO05D007673 1.4e-29 134.8 195 43.6
Os02g0147700 Oryza sativa ssp. japonica HOM05D006277 ORTHO05D007673 2.3e-29 134.0 182 44.0
FAN01G0327 Fragaria x ananassa HOM05D006277 ORTHO05D007673 3.1e-29 133.7 257 40.5
Sabra12G0000500 Salix brachista HOM05D006277 ORTHO05D007673 3.1e-29 133.7 220 42.7
Lsat_1_v5_gn_2_135460 Lactuca sativa HOM05D006277 ORTHO05D007673 4.0e-29 133.3 212 41.5
Sabra12G0006800 Salix brachista HOM05D006277 ORTHO05D007673 5.2e-29 132.9 220 42.7
PGR142G2769 Punica granatum HOM05D006277 ORTHO05D007673 8.9e-29 132.1 247 38.5
TWI59G0797 Tripterygium wilfordii HOM05D006277 ORTHO05D007673 1.2e-28 131.7 230 39.6
AUR62030650 Chenopodium quinoa HOM05D006277 ORTHO05D007673 1.5e-28 131.3 202 38.6
MBI16_g10337_MAGBIO Magnolia biondii HOM05D006277 ORTHO05D007673 1.5e-28 131.3 214 43.0
RcHm_v2.0_Chr1g0383301 Rosa chinensis HOM05D006277 ORTHO05D007673 1.5e-28 131.3 205 42.9
ClCG07G009750 Citrullus lanatus HOM05D006277 ORTHO05D007673 2.0e-28 131.0 187 41.7
Eucgr.K00479 Eucalyptus grandis HOM05D006277 ORTHO05D007673 2.0e-28 131.0 224 40.2
Prupe.2G322100 Prunus persica HOM05D006277 ORTHO05D007673 2.0e-28 131.0 200 43.5
Peaxi162Scf01026g00268 Petunia axillaris HOM05D006277 ORTHO05D007673 2.6e-28 130.6 240 40.4
MELO3C023191.2 Cucumis melo HOM05D006277 ORTHO05D007673 3.4e-28 130.2 187 41.7
CDE02G3091 Ceratophyllum demersum HOM05D006277 ORTHO05D007673 4.4e-28 129.8 205 41.5
AUR62028116 Chenopodium quinoa HOM05D006277 ORTHO05D007673 5.8e-28 129.4 242 36.8
CsaV3_2G019700 Cucumis sativus L. HOM05D006277 ORTHO05D007673 5.8e-28 129.4 186 41.4
SGA_v2.0_scaffold18G08496 Striga asiatica HOM05D006277 ORTHO05D007673 7.5e-28 129.0 246 36.6
Zm00001eb232230 Zea mays HOM05D006277 ORTHO05D007673 9.9e-28 128.6 215 40.9
Aqoxy7G02781 Aquilegia oxysepala HOM05D006277 ORTHO05D007673 1.7e-27 127.9 179 44.7
arahy.Tifrunner.gnm1.ann1.T9XRV5 Arachis hypogaea HOM05D006277 ORTHO05D007673 2.2e-27 127.5 179 44.7
Ciclev10005393m.g Citrus clementina HOM05D006277 ORTHO05D007673 2.2e-27 127.5 190 42.1
Rhsim03G0218400 Rhododendron simsii HOM05D006277 ORTHO05D007673 3.7e-27 126.7 216 38.9
Cc02_g00600 Coffea canephora HOM05D006277 ORTHO05D007673 2.4e-26 124.0 225 37.3
FAN03G1266 Fragaria x ananassa HOM05D006277 ORTHO05D007673 1.2e-25 121.7 176 44.9
CBR_g24064 Chara braunii HOM05D006277 ORTHO05D007673 2.7e-25 120.6 185 42.2
BolC9t53629H Brassica oleracea HOM05D003313 ORTHO05D004217 1.0e-24 118.6 173 44.5
BraA09t36286Z Brassica rapa HOM05D000010 ORTHO05D000063 1.7e-24 117.9 165 41.8
vmacro06474 Vaccinium macrocarpon HOM05D006277 ORTHO05D007673 2.3e-24 117.5 257 37.0
LjContig00312_ERROPOS870357g0003049 Lotus japonicus HOM05D006277 ORTHO05D007673 7.3e-23 112.5 285 35.1
A09p06430 Brassica napus HOM05D000010 ORTHO05D000063 1.2e-22 111.7 192 39.1
Haze_00334 Corylus avellana HOM05D006277 ORTHO05D007673 2.1e-22 110.9 238 34.0
PSO384G0555 Papaver somniferum HOM05D006277 ORTHO05D007673 1.1e-21 108.6 157 45.2
BcaNung01248 Brassica carinata HOM05D006277 ORTHO05D007673 4.0e-21 106.7 196 39.8
CBR_g39579 Chara braunii HOM05D000601 ORTHO05D007673 6.8e-21 105.9 122 46.7
CBR_g31160 Chara braunii HOM05D006277 ORTHO05D007673 1.2e-20 105.1 120 51.7
Cfa016128 Carpinus fangiana HOM05D006277 ORTHO05D007673 2.6e-20 104.0 101 53.5
Cpa.g.sc3.186 Carica papaya HOM05D006277 ORTHO05D007673 3.4e-20 103.6 249 35.7
Gohir.D08G117800 Gossypium hirsutum HOM05D006277 ORTHO05D007673 7.6e-20 102.4 124 45.2
Actinidia08720 Actinidia chinensis HOM05D006277 ORTHO05D007673 2.2e-19 100.9 104 51.0
DCAR_010558 Daucus carota HOM05D006277 ORTHO05D007673 6.4e-19 99.4 189 39.7
Oeu010718.2 Olea europaea HOM05D006277 ORTHO05D007673 4.6e-17 93.2 245 31.4
C09p07160 Brassica napus HOM05D000010 ORTHO05D000063 1.3e-16 91.7 135 41.5
Nn7g37003 Nelumbo nucifera HOM05D006277 ORTHO05D007673 5.1e-16 89.7 197 34.5
CDE06G1557 Ceratophyllum demersum HOM05D006277 ORTHO05D007673 7.3e-15 85.9 108 46.3
Potri.015G000701 Populus trichocarpa HOM05D006277 ORTHO05D007673 7.3e-15 85.9 120 42.5
arahy.Tifrunner.gnm1.ann1.Z5WHM0 Arachis hypogaea HOM05D006277 ORTHO05D007673 2.8e-14 84.0 191 34.0
MCO04G384 Micromonas commoda HOM05D006277 ORTHO05D007673 5.4e-10 69.7 128 39.8
Cre02.g105050 Chlamydomonas reinhardtii HOM05D006277 ORTHO05D007673 2.5e-07 60.8 133 34.6


User provided reference genes

Program Settings