Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c7_3330 Physcomitrium patens HOM05D002602 ORTHO05D002661 8.7e-134 480.7 321 100.0
Pp3c11_18960 Physcomitrium patens HOM05D002602 ORTHO05D002661 8.5e-97 357.8 322 82.6
AagrBONN_evm.TU.Sc2ySwM_228.1297 Anthoceros agrestis HOM05D002602 ORTHO05D002661 1.3e-33 147.9 346 50.0
Mapoly0012s0193 Marchantia polymorpha HOM05D002602 ORTHO05D002661 1.9e-32 144.1 341 54.5
SEGI_05752 Sequoiadendron giganteum HOM05D002602 ORTHO05D002661 2.1e-26 124.0 355 44.8
TAR383G0480 Trochodendron aralioides HOM05D002602 ORTHO05D002661 2.3e-25 120.6 330 44.8
Duzib150G1692 Durio zibethinus HOM05D002602 ORTHO05D002661 1.2e-21 108.2 333 44.7
FAN20G3150 Fragaria x ananassa HOM05D002602 ORTHO05D002661 1.3e-20 104.8 328 45.7
Psat5g026840 Pisum sativum HOM05D002602 ORTHO05D002661 8.4e-20 102.1 328 44.2
FvH4_2g30190 Fragaria vesca HOM05D002602 ORTHO05D002661 1.1e-19 101.7 328 45.1
Dinv35879 Davidia involucrata HOM05D002602 ORTHO05D002661 3.2e-19 100.1 336 40.8
Psat5g026800 Pisum sativum HOM05D002602 ORTHO05D002661 5.4e-19 99.4 283 35.3
EL10Ac2g02533 Beta vulgaris HOM05D002602 ORTHO05D002661 1.6e-18 97.8 330 41.2
RcHm_v2.0_Chr6g0312721 Rosa chinensis HOM05D002602 ORTHO05D002661 1.6e-18 97.8 331 45.0
Dinv30216 Davidia involucrata HOM05D002602 ORTHO05D002661 3.5e-18 96.7 340 41.2
MSTRG.14002 Avicennia marina HOM05D002602 ORTHO05D002661 6.0e-18 95.9 337 41.8
GSVIVG01035728001 Vitis vinifera HOM05D002602 ORTHO05D002661 1.0e-17 95.1 337 41.5
Migut.A00271 Erythranthe guttata HOM05D002602 ORTHO05D002661 1.3e-17 94.7 236 40.7
Thecc.09G115400 Theobroma cacao HOM05D002602 ORTHO05D002661 1.7e-17 94.4 333 44.4
SGA_v2.0_scaffold169G38633 Striga asiatica HOM05D002602 ORTHO05D002661 2.3e-17 94.0 328 43.6
C01p06340 Brassica napus HOM05D002602 ORTHO05D002661 8.7e-17 92.0 334 44.9
Carub.0007s0793 Capsella rubella HOM05D002602 ORTHO05D002661 8.7e-17 92.0 232 36.6
Lalb_Chr23g0269011 Lupinus albus HOM05D002602 ORTHO05D002661 8.7e-17 92.0 331 44.4
TAR636G3129 Trochodendron aralioides HOM05D002602 ORTHO05D002661 8.7e-17 92.0 329 32.2
BcaC09g52052 Brassica carinata HOM05D002602 ORTHO05D002661 1.1e-16 91.7 332 42.2
BraA01t00546Z Brassica rapa HOM05D002602 ORTHO05D002661 1.5e-16 91.3 214 40.2
FAN27G2877 Fragaria x ananassa HOM05D002602 ORTHO05D002661 1.5e-16 91.3 352 41.8
SMO196G0021 Selaginella moellendorffii HOM05D002602 ORTHO05D002661 1.9e-16 90.9 270 38.9
unitig_0.g2813 Utricularia gibba HOM05D002602 ORTHO05D002661 1.9e-16 90.9 330 32.4
ATR0037G044 Amborella trichopoda HOM05D002602 ORTHO05D002661 2.5e-16 90.5 202 46.0
Migut.E01502 Erythranthe guttata HOM05D002602 ORTHO05D002661 2.5e-16 90.5 328 41.5
Hma1.2p1_0175F.1_g077310 Hydrangea macrophylla HOM05D002602 ORTHO05D002661 2.5e-16 90.5 342 35.7
Ca_15695_v3 Cicer arietinum L. HOM05D002602 ORTHO05D002661 4.3e-16 89.7 331 44.1
Actinidia13291 Actinidia chinensis HOM05D002602 ORTHO05D002661 7.3e-16 89.0 327 40.7
BolC1t00630H Brassica oleracea HOM05D002602 ORTHO05D002661 7.3e-16 89.0 202 43.1
Duzib187G0766 Durio zibethinus HOM05D002602 ORTHO05D002661 7.3e-16 89.0 323 40.2
Lj1g0024566 Lotus japonicus HOM05D002602 ORTHO05D002661 7.3e-16 89.0 333 44.4
Solyc08g150138.1 Solanum lycopersicum HOM05D002602 ORTHO05D002661 7.3e-16 89.0 323 41.8
Phvul.009G098300 Phaseolus vulgaris HOM05D002602 ORTHO05D002661 9.6e-16 88.6 330 44.5
Potri.006G246300 Populus trichocarpa HOM05D002602 ORTHO05D002661 1.3e-15 88.2 330 41.2
Oeu045175.1 Olea europaea HOM05D002602 ORTHO05D002661 1.6e-15 87.8 336 42.6
Sed0025801 Sechium edule HOM05D002602 ORTHO05D002661 2.8e-15 87.0 203 37.4
Sopen08g021800 Solanum pennellii HOM05D002602 ORTHO05D002661 2.8e-15 87.0 328 40.9
AT4G32610 Arabidopsis thaliana HOM05D002602 ORTHO05D002661 3.6e-15 86.7 335 43.3
Sopen08g021810 Solanum pennellii HOM05D002602 ORTHO05D002661 3.6e-15 86.7 323 41.2
Thecc.09G115500 Theobroma cacao HOM05D002602 ORTHO05D002661 3.6e-15 86.7 330 43.6
AL7G19150 Arabidopsis lyrata HOM05D002602 ORTHO05D002661 8.1e-15 85.5 327 39.4
Hund03001 Selenicereus undatus HOM05D002602 ORTHO05D002661 8.1e-15 85.5 339 40.4
A01p05770 Brassica napus HOM05D002602 ORTHO05D002661 1.1e-14 85.1 339 44.2
Glyma.06G073800 Glycine max HOM05D002602 ORTHO05D002661 1.8e-14 84.3 329 42.9
Medtr3g108090 Medicago truncatula HOM05D002602 ORTHO05D002661 1.8e-14 84.3 323 43.3
Actinidia15713 Actinidia chinensis HOM05D002602 ORTHO05D002661 3.1e-14 83.6 330 35.2
Aqoxy7G01832 Aquilegia oxysepala HOM05D002602 ORTHO05D002661 3.1e-14 83.6 323 40.9
Gorai.009G011900 Gossypium raimondii HOM05D002602 ORTHO05D002661 3.1e-14 83.6 335 40.0
Nn2g11832 Nelumbo nucifera HOM05D002602 ORTHO05D002661 3.1e-14 83.6 182 36.8
TAR624G0315 Trochodendron aralioides HOM05D002602 ORTHO05D002661 5.3e-14 82.8 328 44.5
MSTRG.1648 Avicennia marina HOM05D002602 ORTHO05D002661 6.9e-14 82.4 330 39.7
Gohir.D07G003800 Gossypium hirsutum HOM05D002602 ORTHO05D002661 6.9e-14 82.4 333 40.5
Potri.018G034800 Populus trichocarpa HOM05D002602 ORTHO05D002661 6.9e-14 82.4 333 42.0
Actinidia09399 Actinidia chinensis HOM05D002602 ORTHO05D002661 9.0e-14 82.0 340 39.7
Glyma.04G072600 Glycine max HOM05D002602 ORTHO05D002661 9.0e-14 82.0 331 41.4
Actinidia14641 Actinidia chinensis HOM05D002250 ORTHO05D002393 1.2e-13 81.6 330 39.1
TPR.G34682 Trifolium pratense HOM05D002602 ORTHO05D002661 1.2e-13 81.6 325 40.3
Gorai.001G003500 Gossypium raimondii HOM05D002602 ORTHO05D002661 1.5e-13 81.3 335 43.0
vmacro05448 Vaccinium macrocarpon HOM05D002602 ORTHO05D002661 1.5e-13 81.3 339 42.5
CSS0048428 Camellia sinensis var. sinensis HOM05D002602 ORTHO05D002661 4.5e-13 79.7 339 39.8
Duzib150G1573 Durio zibethinus HOM05D002602 ORTHO05D002661 5.8e-13 79.3 327 45.0
unitig_747.g21878 Utricularia gibba HOM05D002602 ORTHO05D002661 5.8e-13 79.3 280 35.4
BcaC01g01010 Brassica carinata HOM05D002602 ORTHO05D002661 7.6e-13 79.0 326 43.9
Duzib168G0558 Durio zibethinus HOM05D002602 ORTHO05D002661 7.6e-13 79.0 332 40.7
Thhalv10025336m.g Eutrema salsugineum HOM05D002602 ORTHO05D002661 9.9e-13 78.6 327 43.1
Sabra18G0035600 Salix brachista HOM05D002602 ORTHO05D002661 9.9e-13 78.6 326 40.5
HPP92_005547 Vanilla planifolia HOM05D002602 ORTHO05D002661 1.3e-12 78.2 326 41.1
CDE07G1242 Ceratophyllum demersum HOM05D002602 ORTHO05D002661 1.7e-12 77.8 325 39.7
SalBow8G1639 Salvia bowleyana HOM05D002602 ORTHO05D002661 1.7e-12 77.8 346 41.9
Rhsim02G0187000 Rhododendron simsii HOM05D002602 ORTHO05D002661 2.2e-12 77.4 333 39.6
Duzib168G1527 Durio zibethinus HOM05D002602 ORTHO05D002661 3.8e-12 76.6 334 42.5
TAR626G0862 Trochodendron aralioides HOM05D002602 ORTHO05D002661 3.8e-12 76.6 343 35.9
FvH4_1g05450 Fragaria vesca HOM05D002602 ORTHO05D002661 6.4e-12 75.9 339 39.5
Gohir.A08G237200 Gossypium hirsutum HOM05D002602 ORTHO05D002661 6.4e-12 75.9 330 38.5
Actinidia13423 Actinidia chinensis HOM05D002250 ORTHO05D002393 8.4e-12 75.5 334 41.6
Ciclev10008908m.g Citrus clementina HOM05D002602 ORTHO05D002661 1.1e-11 75.1 347 41.8
Phvul.003G176400 Phaseolus vulgaris HOM05D002602 ORTHO05D002661 1.1e-11 75.1 332 41.3
SMO234G0064 Selaginella moellendorffii HOM05D002602 ORTHO05D002661 1.1e-11 75.1 238 39.9
MD15G1114900 Malus domestica HOM05D002602 ORTHO05D002661 1.4e-11 74.7 324 39.5
Gohir.D05G011600 Gossypium hirsutum HOM05D002602 ORTHO05D002661 1.9e-11 74.3 335 38.8
Nitab4.5_0000066g0030 Nicotiana tabacum HOM05D002602 ORTHO05D002661 1.9e-11 74.3 333 45.0
DCAR_023980 Daucus carota HOM05D002602 ORTHO05D002661 2.4e-11 73.9 331 41.7
TWI34G1255 Tripterygium wilfordii HOM05D002602 ORTHO05D002661 2.4e-11 73.9 329 44.4
Gohir.A07G003400 Gossypium hirsutum HOM05D002602 ORTHO05D002661 3.2e-11 73.6 333 42.3
Lsat_1_v5_gn_7_43001 Lactuca sativa HOM05D002602 ORTHO05D002661 3.2e-11 73.6 323 43.3
THA.LOC104803817 Tarenaya hassleriana HOM05D002602 ORTHO05D002661 3.2e-11 73.6 197 39.1
CSS0041585 Camellia sinensis var. sinensis HOM05D002602 ORTHO05D002661 4.2e-11 73.2 340 38.5
Atru.chr7.2321 Acer truncatum HOM05D002602 ORTHO05D002661 5.4e-11 72.8 207 36.2
Eucgr.L02512 Eucalyptus grandis HOM05D002602 ORTHO05D002661 5.4e-11 72.8 329 42.2
Manes.16G068500 Manihot esculenta HOM05D002602 ORTHO05D002661 5.4e-11 72.8 346 40.8
Oeu019415.1 Olea europaea HOM05D002602 ORTHO05D002661 7.1e-11 72.4 209 38.3
PGR031G2332 Punica granatum HOM05D002602 ORTHO05D002661 7.1e-11 72.4 333 40.8
THA.LOC104803776 Tarenaya hassleriana HOM05D002602 ORTHO05D002661 7.1e-11 72.4 198 35.9
CiPaw.08G015900 Carya illinoinensis HOM05D002602 ORTHO05D002661 9.3e-11 72.0 336 40.5
Gohir.A13G203900 Gossypium hirsutum HOM05D002602 ORTHO05D002661 9.3e-11 72.0 324 44.4
Medtr3g108100 Medicago truncatula HOM05D002602 ORTHO05D002661 9.3e-11 72.0 327 40.1
Oeu031564.1 Olea europaea HOM05D002602 ORTHO05D002661 9.3e-11 72.0 334 44.3
Sed0014074 Sechium edule HOM05D002602 ORTHO05D002661 9.3e-11 72.0 336 40.2
SalBow4G3032 Salvia bowleyana HOM05D002602 ORTHO05D002661 1.2e-10 71.6 342 38.0
BraA08t33762Z Brassica rapa HOM05D002602 ORTHO05D002661 1.6e-10 71.2 229 35.8
Gohir.A05G010900 Gossypium hirsutum HOM05D002602 ORTHO05D002661 1.6e-10 71.2 324 38.6
Oeu014657.1 Olea europaea HOM05D002602 ORTHO05D002661 1.6e-10 71.2 330 40.0
Prupe.7G226700 Prunus persica HOM05D002602 ORTHO05D002661 1.6e-10 71.2 333 39.3
COL.COLO4_24069 Corchorus olitorius HOM05D002602 ORTHO05D002661 2.1e-10 70.9 300 38.7
Gorai.013G238300 Gossypium raimondii HOM05D002602 ORTHO05D002661 2.1e-10 70.9 330 40.0
FAN19G2525 Fragaria x ananassa HOM05D002602 ORTHO05D002661 2.7e-10 70.5 338 38.5
Lalb_Chr12g0197611 Lupinus albus HOM05D002602 ORTHO05D002661 2.7e-10 70.5 331 40.2
Nitab4.5_0000042g0010 Nicotiana tabacum HOM05D002602 ORTHO05D002661 2.7e-10 70.5 323 46.4
Prupe.1G466300 Prunus persica HOM05D002602 ORTHO05D002661 2.7e-10 70.5 327 38.8
Solyc08g067880.4 Solanum lycopersicum HOM05D002602 ORTHO05D002661 2.7e-10 70.5 225 32.9
Eucgr.C02860 Eucalyptus grandis HOM05D002602 ORTHO05D002661 3.5e-10 70.1 329 42.9
FAN26G0699 Fragaria x ananassa HOM05D002602 ORTHO05D002661 4.6e-10 69.7 335 41.2
FAN26G2978 Fragaria x ananassa HOM05D002602 ORTHO05D002661 4.6e-10 69.7 335 41.5
PGR044G2133 Punica granatum HOM05D002602 ORTHO05D002661 4.6e-10 69.7 334 38.3
TWI32G1161 Tripterygium wilfordii HOM05D002602 ORTHO05D002661 4.6e-10 69.7 332 44.6
Lj7A711G44 Lonicera japonica HOM05D002602 ORTHO05D002661 6.0e-10 69.3 292 39.0
QL12p031218 Quercus lobata HOM05D002602 ORTHO05D002661 6.0e-10 69.3 331 42.6
FAN28G2603 Fragaria x ananassa HOM05D002602 ORTHO05D002661 7.9e-10 68.9 344 43.9
Thhalv10000247m.g Eutrema salsugineum HOM05D002602 ORTHO05D002661 1.0e-09 68.6 223 36.3
HanXRQChr03g0062011 Helianthus annuus HOM05D002602 ORTHO05D002661 1.0e-09 68.6 227 39.6
VMungo1309G1769 Vigna mungo HOM05D002602 ORTHO05D002661 1.3e-09 68.2 327 39.8
VMungo1215G0338 Vigna mungo HOM05D002602 ORTHO05D002661 1.8e-09 67.8 329 42.2
CANSAT56G2101 Cannabis sativa HOM05D002602 ORTHO05D002661 2.3e-09 67.4 334 41.9
MBI01_g10036_MAGBIO Magnolia biondii HOM05D002602 ORTHO05D002661 2.3e-09 67.4 337 40.4
Ah.12g063250 Amaranthus hybridus HOM05D002602 ORTHO05D002661 3.0e-09 67.0 346 37.3
Carub.0004s0546 Capsella rubella HOM05D002602 ORTHO05D002661 3.9e-09 66.6 196 39.8
FAN23G0655 Fragaria x ananassa HOM05D002602 ORTHO05D002661 3.9e-09 66.6 334 44.3
Dinv41572 Davidia involucrata HOM05D002602 ORTHO05D002661 5.1e-09 66.2 339 39.2
Manes.16G068400 Manihot esculenta HOM05D002602 ORTHO05D002661 5.1e-09 66.2 344 37.5
AUR62024832 Chenopodium quinoa HOM05D002602 ORTHO05D002661 6.7e-09 65.9 273 42.5
PGSC0003DMG400014501 Solanum tuberosum HOM05D002602 ORTHO05D002661 6.7e-09 65.9 270 45.6
SGA_v2.0_scaffold163G38094 Striga asiatica HOM05D002250 ORTHO05D002393 6.7e-09 65.9 340 38.8
Haze_21626 Corylus avellana HOM05D002602 ORTHO05D002661 8.7e-09 65.5 349 38.7
Cc06_g09280 Coffea canephora HOM05D002602 ORTHO05D002661 1.1e-08 65.1 280 41.8
Gohir.D13G209200 Gossypium hirsutum HOM05D002602 ORTHO05D002661 1.5e-08 64.7 333 40.5
HanXRQChr12g0355871 Helianthus annuus HOM05D002602 ORTHO05D002661 1.5e-08 64.7 325 42.5
Ah.12g063240 Amaranthus hybridus HOM05D002602 ORTHO05D002661 2.5e-08 63.9 330 41.8
AL4G17270 Arabidopsis lyrata HOM05D002602 ORTHO05D002661 2.5e-08 63.9 329 41.9
Gohir.D08G257800 Gossypium hirsutum HOM05D002602 ORTHO05D002661 2.5e-08 63.9 336 38.1
AT2G25670 Arabidopsis thaliana HOM05D002602 ORTHO05D002661 3.3e-08 63.5 327 40.1
Peaxi162Scf00256g00913 Petunia axillaris HOM05D002602 ORTHO05D002661 3.3e-08 63.5 276 42.0
unitig_32.g10925 Utricularia gibba HOM05D002602 ORTHO05D002661 3.3e-08 63.5 339 36.6
Glyma.17G120600 Glycine max HOM05D002602 ORTHO05D002661 4.3e-08 63.2 329 40.4
RcHm_v2.0_Chr2g0091121 Rosa chinensis HOM05D002602 ORTHO05D002661 5.6e-08 62.8 338 41.4
ClCG05G017230 Citrullus lanatus HOM05D002602 ORTHO05D002661 7.4e-08 62.4 327 38.5
Gorai.004G274800 Gossypium raimondii HOM05D002602 ORTHO05D002661 7.4e-08 62.4 332 38.0
Actinidia20335 Actinidia chinensis HOM05D002602 ORTHO05D002661 9.6e-08 62.0 342 35.7
CAN.G21.20 Capsicum annuum HOM05D002602 ORTHO05D002661 9.6e-08 62.0 328 42.4
CiPaw.07G217400 Carya illinoinensis HOM05D002602 ORTHO05D002661 9.6e-08 62.0 344 37.8
Dinv36599 Davidia involucrata HOM05D002602 ORTHO05D002661 9.6e-08 62.0 334 41.9
BcaNung04518 Brassica carinata HOM05D002602 ORTHO05D002661 1.3e-07 61.6 324 41.7
CARHR115580 Cardamine hirsuta HOM05D002602 ORTHO05D002661 1.3e-07 61.6 224 37.1
CsaV3_3G046710 Cucumis sativus L. HOM05D002602 ORTHO05D002661 1.3e-07 61.6 327 39.8
GSVIVG01015438001 Vitis vinifera HOM05D002602 ORTHO05D002661 1.3e-07 61.6 229 34.9
arahy.Tifrunner.gnm1.ann1.N787F7 Arachis hypogaea HOM05D002602 ORTHO05D002661 1.6e-07 61.2 146 36.3
PSO782G3209 Papaver somniferum HOM05D002602 ORTHO05D002661 2.1e-07 60.8 228 37.3
Solyc05g018490.3 Solanum lycopersicum HOM05D002602 ORTHO05D002661 2.1e-07 60.8 341 32.6
Atru.chr7.1291 Acer truncatum HOM05D002602 ORTHO05D002661 2.8e-07 60.5 329 43.2
Cpa.g.sc23.148 Carica papaya HOM05D002602 ORTHO05D002661 2.8e-07 60.5 337 40.4
Lsat_1_v5_gn_8_94581 Lactuca sativa HOM05D002602 ORTHO05D002661 2.8e-07 60.5 326 43.3
TPR.G34689 Trifolium pratense HOM05D002602 ORTHO05D002661 2.8e-07 60.5 277 40.4
TWI63G0040 Tripterygium wilfordii HOM05D002602 ORTHO05D002661 4.8e-07 59.7 334 43.1
CBR_g29849 Chara braunii HOM05D002602 ORTHO05D002661 6.2e-07 59.3 208 40.9
Nitab4.5_0012266g0010 Nicotiana tabacum HOM05D002602 ORTHO05D002661 8.1e-07 58.9 279 40.1
arahy.Tifrunner.gnm1.ann1.K5A3DB Arachis hypogaea HOM05D002602 ORTHO05D002661 1.1e-06 58.5 363 34.4
A08p18100 Brassica napus HOM05D002602 ORTHO05D002661 1.1e-06 58.5 228 33.8
Lalb_Chr13g0302291 Lupinus albus HOM05D002602 ORTHO05D002661 1.1e-06 58.5 331 34.1
CSS0015478 Camellia sinensis var. sinensis HOM05D002250 ORTHO05D002393 1.4e-06 58.2 336 36.0
Lsat_1_v5_gn_5_99801 Lactuca sativa HOM05D002602 ORTHO05D002661 1.8e-06 57.8 217 37.8
Nn8g39271 Nelumbo nucifera HOM05D002602 ORTHO05D002661 3.1e-06 57.0 75 46.7
PSO063G7370 Papaver somniferum HOM05D002602 ORTHO05D002661 3.1e-06 57.0 243 35.4
Rhsim03G0245200 Rhododendron simsii HOM05D002602 ORTHO05D002661 3.1e-06 57.0 337 40.1
BcaC07g40851 Brassica carinata HOM05D002602 ORTHO05D002661 5.3e-06 56.2 337 40.9
BolC8t51421H Brassica oleracea HOM05D002602 ORTHO05D002661 5.3e-06 56.2 337 40.9
vmacro06191 Vaccinium macrocarpon HOM05D002602 ORTHO05D002661 5.3e-06 56.2 335 40.3
Aa31sc329G20 Aethionema arabicum HOM05D002602 ORTHO05D002661 6.9e-06 55.8 328 39.3


User provided reference genes

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