Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c7_280 Physcomitrium patens HOM05D004013 ORTHO05D004710 1.4e-226 789.3 387 100.0
Pp3c11_22820 Physcomitrium patens HOM05D004013 ORTHO05D004710 9.6e-188 660.2 387 82.4
Mapoly0153s0038 Marchantia polymorpha HOM05D004013 ORTHO05D004710 5.0e-128 461.8 401 57.4
PSO675G0050 Papaver somniferum HOM05D004013 ORTHO05D004710 5.8e-124 448.4 401 54.9
PSO732G0206 Papaver somniferum HOM05D004013 ORTHO05D004710 9.8e-124 447.6 401 54.6
CDE04G0030 Ceratophyllum demersum HOM05D004013 ORTHO05D004710 2.0e-121 439.9 400 55.2
ECA232G0201 Erigeron canadensis HOM05D004013 ORTHO05D004710 2.0e-121 439.9 392 54.3
SEGI_37986 Sequoiadendron giganteum HOM05D004013 ORTHO05D004710 2.0e-121 439.9 405 54.8
Cpa.g.sc9.235 Carica papaya HOM05D004013 ORTHO05D004710 4.6e-121 438.7 402 54.2
CDE06G1594 Ceratophyllum demersum HOM05D004013 ORTHO05D004710 4.6e-121 438.7 398 54.5
MBI15_g08971_MAGBIO Magnolia biondii HOM05D004013 ORTHO05D004710 6.0e-121 438.3 413 54.0
HanXRQChr08g0212421 Helianthus annuus HOM05D004013 ORTHO05D004710 7.8e-121 438.0 392 54.1
ATR0706G248 Amborella trichopoda HOM05D004013 ORTHO05D004710 1.0e-120 437.6 404 54.2
TAR365G0341 Trochodendron aralioides HOM05D004013 ORTHO05D004710 2.3e-120 436.4 402 54.0
Zm00001eb065800 Zea mays HOM05D004013 ORTHO05D004710 3.9e-120 435.6 380 55.3
TAR633G1686 Trochodendron aralioides HOM05D004013 ORTHO05D004710 5.0e-120 435.3 406 53.0
Lalb_Chr01g0021691 Lupinus albus HOM05D004013 ORTHO05D004710 1.1e-119 434.1 401 53.1
PGR142G2472 Punica granatum HOM05D004013 ORTHO05D004710 1.1e-119 434.1 398 53.3
arahy.Tifrunner.gnm1.ann1.LVD0DC Arachis hypogaea HOM05D004013 ORTHO05D004710 1.9e-119 433.3 400 54.2
Lsat_1_v5_gn_8_45601 Lactuca sativa HOM05D004013 ORTHO05D004710 1.9e-119 433.3 394 54.6
GSVIVG01003913001 Vitis vinifera HOM05D004013 ORTHO05D004710 3.3e-119 432.6 404 52.5
Phvul.008G048900 Phaseolus vulgaris HOM05D004013 ORTHO05D004710 4.3e-119 432.2 401 53.6
Os04g0682000 Oryza sativa ssp. japonica HOM05D004013 ORTHO05D004710 5.6e-119 431.8 381 52.8
Dinv28066 Davidia involucrata HOM05D004013 ORTHO05D004710 7.3e-119 431.4 400 53.2
CiPaw.10G057600 Carya illinoinensis HOM05D004013 ORTHO05D004710 1.2e-118 430.6 402 53.5
Medtr7g081230 Medicago truncatula HOM05D004013 ORTHO05D004710 2.8e-118 429.5 399 53.1
HanXRQChr12g0363401 Helianthus annuus HOM05D004013 ORTHO05D004710 3.6e-118 429.1 389 52.7
arahy.Tifrunner.gnm1.ann1.M4STP7 Arachis hypogaea HOM05D004013 ORTHO05D004710 4.7e-118 428.7 401 53.6
Glyma.18G248400 Glycine max HOM05D004013 ORTHO05D004710 8.0e-118 427.9 400 52.8
Potri.017G000500 Populus trichocarpa HOM05D004013 ORTHO05D004710 8.0e-118 427.9 394 53.6
CsaV3_2G011360 Cucumis sativus L. HOM05D004013 ORTHO05D004710 1.4e-117 427.2 400 52.2
ECA233G0032 Erigeron canadensis HOM05D004013 ORTHO05D004710 1.4e-117 427.2 395 53.2
Migut.L00278 Erythranthe guttata HOM05D004013 ORTHO05D004710 1.4e-117 427.2 383 52.7
TPR.G29111 Trifolium pratense HOM05D004013 ORTHO05D004710 1.4e-117 427.2 400 52.5
Psat0s3112g0040 Pisum sativum HOM05D004013 ORTHO05D004710 2.3e-117 426.4 399 52.4
VMungo1383G0353 Vigna mungo HOM05D004013 ORTHO05D004710 2.3e-117 426.4 401 52.9
Atru.chr3.2025 Acer truncatum HOM05D004013 ORTHO05D004710 3.1e-117 426.0 402 52.2
Sed0016347 Sechium edule HOM05D004013 ORTHO05D004710 3.1e-117 426.0 400 51.5
QL05p046231 Quercus lobata HOM05D004013 ORTHO05D004710 4.0e-117 425.6 401 52.9
Hund22667 Selenicereus undatus HOM05D004013 ORTHO05D004710 4.0e-117 425.6 400 51.5
Ciclev10019906m.g Citrus clementina HOM05D004013 ORTHO05D004710 5.2e-117 425.2 403 53.8
Lj1g0014615 Lotus japonicus HOM05D004013 ORTHO05D004710 5.2e-117 425.2 400 53.0
Duzib147G1378 Durio zibethinus HOM05D004013 ORTHO05D004710 6.8e-117 424.9 381 53.3
Duzib264G0158 Durio zibethinus HOM05D004013 ORTHO05D004710 6.8e-117 424.9 385 52.7
Eucgr.K03157 Eucalyptus grandis HOM05D004013 ORTHO05D004710 8.9e-117 424.5 403 53.3
CiPaw.09G068100 Carya illinoinensis HOM05D004013 ORTHO05D004710 1.2e-116 424.1 407 51.6
Gohir.D12G001900 Gossypium hirsutum HOM05D004013 ORTHO05D004710 1.2e-116 424.1 384 53.1
Lj6A740G51 Lonicera japonica HOM05D004013 ORTHO05D004710 1.2e-116 424.1 404 52.7
Gohir.A12G002200 Gossypium hirsutum HOM05D004013 ORTHO05D004710 1.5e-116 423.7 384 52.3
MD00G1055200 Malus domestica HOM05D004013 ORTHO05D004710 1.5e-116 423.7 402 53.0
Manes.01G009000 Manihot esculenta HOM05D004013 ORTHO05D004710 1.5e-116 423.7 402 52.2
arahy.Tifrunner.gnm1.ann1.ERJ0Z2 Arachis hypogaea HOM05D004013 ORTHO05D004710 2.0e-116 423.3 411 52.1
MELO3C008520.2 Cucumis melo HOM05D004013 ORTHO05D004710 2.0e-116 423.3 400 51.5
Thecc.01G234100 Theobroma cacao HOM05D004013 ORTHO05D004710 3.4e-116 422.5 383 52.5
Glyma.09G244800 Glycine max HOM05D004013 ORTHO05D004710 4.4e-116 422.2 401 52.1
Migut.L00578 Erythranthe guttata HOM05D004013 ORTHO05D004710 5.8e-116 421.8 383 52.5
MD07G1000400 Malus domestica HOM05D004013 ORTHO05D004710 5.8e-116 421.8 402 53.5
Prupe.2G000200 Prunus persica HOM05D004013 ORTHO05D004710 5.8e-116 421.8 402 52.7
vmacro09116 Vaccinium macrocarpon HOM05D004013 ORTHO05D004710 5.8e-116 421.8 402 52.5
Gorai.008G001300 Gossypium raimondii HOM05D004013 ORTHO05D004710 7.5e-116 421.4 384 52.1
Zm00001eb433950 Zea mays HOM05D004013 ORTHO05D004710 7.5e-116 421.4 377 53.8
Lalb_Chr03g0040611 Lupinus albus HOM05D004013 ORTHO05D004710 9.8e-116 421.0 399 51.1
Ca_08048_v3 Cicer arietinum L. HOM05D004013 ORTHO05D004710 1.3e-115 420.6 401 51.4
Ca_08054_v3 Cicer arietinum L. HOM05D004013 ORTHO05D004710 1.3e-115 420.6 401 51.4
Potri.007G147100 Populus trichocarpa HOM05D004013 ORTHO05D004710 1.7e-115 420.2 394 53.3
Os03g0391000 Oryza sativa ssp. japonica HOM05D004013 ORTHO05D004710 2.2e-115 419.9 385 53.0
SMO145G0104 Selaginella moellendorffii HOM05D004013 ORTHO05D004710 3.7e-115 419.1 365 59.7
AUR62023683 Chenopodium quinoa HOM05D004013 ORTHO05D004710 1.1e-114 417.5 395 50.6
Aa31LG1G25800 Aethionema arabicum HOM05D004013 ORTHO05D004710 2.4e-114 416.4 390 51.5
CSS0003826 Camellia sinensis var. sinensis HOM05D004013 ORTHO05D004710 2.4e-114 416.4 404 50.2
CSS0048139 Camellia sinensis var. sinensis HOM05D004013 ORTHO05D004710 2.4e-114 416.4 404 50.2
Hma1.2p1_0940F.1_g239620 Hydrangea macrophylla HOM05D004013 ORTHO05D004710 3.2e-114 416.0 402 51.7
TWI63G0479 Tripterygium wilfordii HOM05D004013 ORTHO05D004710 5.4e-114 415.2 401 51.9
CANSAT78G0639 Cannabis sativa HOM05D004013 ORTHO05D004710 7.0e-114 414.8 399 52.6
BcaB02g08204 Brassica carinata HOM05D004013 ORTHO05D004710 9.2e-114 414.5 396 51.8
Cfa000589 Carpinus fangiana HOM05D004013 ORTHO05D004710 9.2e-114 414.5 402 50.7
COL.COLO4_06916 Corchorus olitorius HOM05D004013 ORTHO05D004710 1.2e-113 414.1 404 50.0
AL5G42130 Arabidopsis lyrata HOM05D004013 ORTHO05D004710 2.1e-113 413.3 396 50.8
SGA_v2.0_scaffold37G14795 Striga asiatica HOM05D004013 ORTHO05D004710 2.1e-113 413.3 378 52.1
Nitab4.5_0001568g0070 Nicotiana tabacum HOM05D004013 ORTHO05D004710 2.7e-113 412.9 390 51.8
AL4G43020 Arabidopsis lyrata HOM05D004013 ORTHO05D004710 3.5e-113 412.5 388 51.8
Nitab4.5_0005132g0050 Nicotiana tabacum HOM05D004013 ORTHO05D004710 4.6e-113 412.1 390 52.3
HPP92_020809 Vanilla planifolia HOM05D004013 ORTHO05D004710 6.0e-113 411.8 404 51.5
AT3G59950 Arabidopsis thaliana HOM05D004013 ORTHO05D004710 7.8e-113 411.4 396 50.0
AUR62002510 Chenopodium quinoa HOM05D004013 ORTHO05D004710 7.8e-113 411.4 414 49.3
Oeu011024.1 Olea europaea HOM05D004013 ORTHO05D004710 7.8e-113 411.4 387 51.4
CARHR170260 Cardamine hirsuta HOM05D004013 ORTHO05D004710 1.7e-112 410.2 392 51.0
AT2G44140 Arabidopsis thaliana HOM05D004013 ORTHO05D004710 2.3e-112 409.8 388 52.1
EL10Ac3g06192 Beta vulgaris HOM05D004013 ORTHO05D004710 6.6e-112 408.3 429 49.2
C04p32840 Brassica napus HOM05D004013 ORTHO05D004710 6.6e-112 408.3 395 50.4
BcaC02g10096 Brassica carinata HOM05D004013 ORTHO05D004710 1.5e-111 407.1 395 50.4
BolC4t24846H Brassica oleracea HOM05D004013 ORTHO05D004710 1.5e-111 407.1 395 50.4
BraA04t15923Z Brassica rapa HOM05D004013 ORTHO05D004710 1.5e-111 407.1 394 51.0
Sp4g26220 Schrenkiella parvula HOM05D004013 ORTHO05D004710 1.5e-111 407.1 388 50.3
BcaC02g12335 Brassica carinata HOM05D004013 ORTHO05D004710 2.5e-111 406.4 373 52.5
C04p05030 Brassica napus HOM05D004013 ORTHO05D004710 2.5e-111 406.4 373 52.5
BolC4t22136H Brassica oleracea HOM05D004013 ORTHO05D004710 2.5e-111 406.4 373 52.5
DCAR_023584 Daucus carota HOM05D004013 ORTHO05D004710 3.3e-111 406.0 385 51.4
Sp5g03230 Schrenkiella parvula HOM05D004013 ORTHO05D004710 3.3e-111 406.0 394 50.0
PGSC0003DMG400032144 Solanum tuberosum HOM05D004013 ORTHO05D004710 5.6e-111 405.2 419 49.6
Ah.07g203370 Amaranthus hybridus HOM05D004013 ORTHO05D004710 7.3e-111 404.8 381 51.2
arahy.Tifrunner.gnm1.ann1.AL59ZJ Arachis hypogaea HOM05D004013 ORTHO05D004710 7.3e-111 404.8 401 51.9
TWI15G0551 Tripterygium wilfordii HOM05D004013 ORTHO05D004710 7.3e-111 404.8 401 49.1
A04p01980 Brassica napus HOM05D004013 ORTHO05D004710 2.1e-110 403.3 395 50.9
Carub.0004s2669 Capsella rubella HOM05D004013 ORTHO05D004710 2.8e-110 402.9 388 50.5
Carub.0005s2667 Capsella rubella HOM05D004013 ORTHO05D004710 2.8e-110 402.9 373 51.7
Thhalv10005940m.g Eutrema salsugineum HOM05D004013 ORTHO05D004710 2.8e-110 402.9 376 51.1
BraA09t40658Z Brassica rapa HOM05D004013 ORTHO05D004710 4.7e-110 402.1 390 51.0
A05p04250 Brassica napus HOM05D004013 ORTHO05D004710 6.2e-110 401.7 392 50.8
BraA05t19410Z Brassica rapa HOM05D004013 ORTHO05D004710 6.2e-110 401.7 392 50.8
CARHR139300 Cardamine hirsuta HOM05D004013 ORTHO05D004710 8.1e-110 401.4 390 50.3
Nn1g09391 Nelumbo nucifera HOM05D004013 ORTHO05D004710 8.1e-110 401.4 344 55.5
MSTRG.23493 Avicennia marina HOM05D004013 ORTHO05D004710 1.8e-109 400.2 386 51.6
BcaC07g40400 Brassica carinata HOM05D004013 ORTHO05D004710 3.1e-109 399.4 393 50.1
Solyc01g006230.3 Solanum lycopersicum HOM05D004013 ORTHO05D004710 3.1e-109 399.4 419 50.1
Sopen01g002230 Solanum pennellii HOM05D004013 ORTHO05D004710 3.1e-109 399.4 419 50.1
BcaC07g40539 Brassica carinata HOM05D004013 ORTHO05D004710 4.0e-109 399.1 390 50.3
Lj3C865T7 Lonicera japonica HOM05D004013 ORTHO05D004710 6.8e-109 398.3 396 49.2
BcaB02g08917 Brassica carinata HOM05D004013 ORTHO05D004710 1.2e-108 397.5 369 52.3
CAN.G140.48 Capsicum annuum HOM05D004013 ORTHO05D004710 2.0e-108 396.7 418 48.3
SalBow7G0073 Salvia bowleyana HOM05D004013 ORTHO05D004710 2.6e-108 396.4 427 47.1
Ah.13g073110 Amaranthus hybridus HOM05D004013 ORTHO05D004710 3.4e-108 396.0 392 50.8
FvH4_2g06800 Fragaria vesca HOM05D004013 ORTHO05D004710 1.3e-107 394.0 411 50.6
FAN24G3388 Fragaria x ananassa HOM05D004013 ORTHO05D004710 1.3e-107 394.0 410 49.8
BolC8t51099H Brassica oleracea HOM05D004013 ORTHO05D004710 2.2e-107 393.3 395 49.4
RcHm_v2.0_Chr6g0259021 Rosa chinensis HOM05D004013 ORTHO05D004710 2.9e-107 392.9 407 52.3
FAN20G2928 Fragaria x ananassa HOM05D004013 ORTHO05D004710 3.7e-107 392.5 411 50.9
Rhsim09G0091900 Rhododendron simsii HOM05D004013 ORTHO05D004710 4.9e-107 392.1 470 44.7
Thhalv10001432m.g Eutrema salsugineum HOM05D004013 ORTHO05D004710 1.1e-106 391.0 388 49.5
SGA_v2.0_scaffold3G01797 Striga asiatica HOM05D004013 ORTHO05D004710 4.1e-106 389.0 387 51.2
A09p52290 Brassica napus HOM05D004013 ORTHO05D004710 7.1e-106 388.3 415 48.0
FAN15G0687 Fragaria x ananassa HOM05D004013 ORTHO05D004710 1.6e-105 387.1 395 50.9
FAN27G1923 Fragaria x ananassa HOM05D004013 ORTHO05D004710 6.0e-105 385.2 412 49.3
DCAR_026793 Daucus carota HOM05D004013 ORTHO05D004710 1.3e-104 384.0 403 47.9
SHI01175 Sapria himalayana HOM05D004013 ORTHO05D004710 7.3e-103 378.3 396 49.2
unitig_748.g8760 Utricularia gibba HOM05D004013 ORTHO05D004710 9.5e-103 377.9 378 48.7
CSS0004368 Camellia sinensis var. sinensis HOM05D004013 ORTHO05D004710 3.5e-97 359.4 409 46.7
Oeu034368.2 Olea europaea HOM05D004013 ORTHO05D004710 2.4e-93 346.7 507 38.3
Peaxi162Scf00441g00621 Petunia axillaris HOM05D004013 ORTHO05D004710 4.0e-93 345.9 388 45.6
vmacro10687 Vaccinium macrocarpon HOM05D004013 ORTHO05D004710 7.6e-92 341.7 473 40.8
Dinv18636 Davidia involucrata HOM05D004013 ORTHO05D004710 2.9e-91 339.7 319 51.1
Sed0011939 Sechium edule HOM05D004013 ORTHO05D004710 1.3e-88 330.9 287 54.7
ClCG06G010000 Citrullus lanatus HOM05D004013 ORTHO05D004710 8.7e-88 328.2 285 54.7
Sc08g0007990 Simmondsia chinensis HOM05D004013 ORTHO05D004710 1.6e-86 323.9 288 53.8
THA.LOC104808419 Tarenaya hassleriana HOM05D004013 ORTHO05D004710 1.6e-86 323.9 283 55.5
Haze_06261 Corylus avellana HOM05D004013 ORTHO05D004710 6.9e-85 318.5 642 31.6
CBR_g21952 Chara braunii HOM05D004013 ORTHO05D004710 1.3e-72 277.7 313 47.3
Zm00001eb419970 Zea mays HOM05D004013 ORTHO05D004710 2.7e-65 253.4 255 49.8
Actinidia29462 Actinidia chinensis HOM05D004013 ORTHO05D004710 3.1e-61 240.0 217 52.5
Oeu053147.1 Olea europaea HOM05D004013 ORTHO05D004710 3.4e-60 236.5 228 50.0
C08p34940 Brassica napus HOM05D004013 ORTHO05D004710 2.9e-59 233.4 208 51.9
Zm00001eb264230 Zea mays HOM05D004013 ORTHO05D004710 1.4e-53 214.5 238 45.4
PRCOL_00001711 Prasinoderma coloniale HOM05D004013 ORTHO05D004710 3.4e-52 209.9 432 35.6
Actinidia29461 Actinidia chinensis HOM05D004013 ORTHO05D004710 3.5e-44 183.3 159 56.0
Hma1.2p1_1910F.1_g307280 Hydrangea macrophylla HOM05D004013 ORTHO05D004710 3.6e-41 173.3 194 45.9
Sabra17G0005400 Salix brachista HOM05D004013 ORTHO05D004710 3.0e-40 170.2 182 48.4
Oeu037862.1 Olea europaea HOM05D004013 ORTHO05D004710 1.0e-35 155.2 284 34.2
Cre12.g510100 Chlamydomonas reinhardtii HOM05D004013 ORTHO05D004710 3.8e-35 153.3 643 25.5
MCO13G568 Micromonas commoda HOM05D004013 ORTHO05D004710 5.2e-32 142.9 288 32.3
Actinidia36638 Actinidia chinensis HOM05D004013 ORTHO05D004710 2.0e-28 131.0 189 39.2
THA.LOC104804900 Tarenaya hassleriana HOM05D004013 ORTHO05D004710 4.5e-28 129.8 154 42.9
unitig_32.g11897 Utricularia gibba HOM05D004013 ORTHO05D004710 2.0e-23 114.4 263 30.4
C08p34950 Brassica napus HOM05D004013 ORTHO05D004710 4.4e-23 113.2 120 47.5
Peaxi162Scf00271g00518 Petunia axillaris HOM05D004013 ORTHO05D004710 1.4e-21 108.2 117 47.9
ClCG06G009970 Citrullus lanatus HOM05D004013 ORTHO05D004710 1.3e-19 101.7 87 51.7
Actinidia03474 Actinidia chinensis HOM05D004013 ORTHO05D004710 3.3e-18 97.1 106 47.2
Cfa022146 Carpinus fangiana HOM05D004013 ORTHO05D124891 5.5e-18 96.3 373 26.5
arahy.Tifrunner.gnm1.ann1.MVA4LE Arachis hypogaea HOM05D004013 ORTHO05D004710 3.0e-16 90.5 115 41.7
arahy.Tifrunner.gnm1.ann1.AC7664 Arachis hypogaea HOM05D004013 ORTHO05D004710 2.3e-11 74.3 102 38.2
ATR0807G232 Amborella trichopoda HOM05D004013 ORTHO05D004710 1.0e-08 65.5 52 51.9
ATR0807G053 Amborella trichopoda HOM05D004013 ORTHO05D004710 9.8e-07 58.9 43 60.5


User provided reference genes

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