Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c7_25670 Physcomitrium patens HOM05D004452 ORTHO05D005358 0.0e+00 1387.5 734 100.0
Mapoly0012s0112 Marchantia polymorpha HOM05D004452 ORTHO05D005358 7.2e-152 542.0 799 43.3
Nn5g30286 Nelumbo nucifera HOM05D004452 ORTHO05D005358 4.3e-136 489.6 754 41.0
Sabra14G0019200 Salix brachista HOM05D004452 ORTHO05D005358 1.2e-133 481.5 760 40.1
Lsat_1_v5_gn_1_21181 Lactuca sativa HOM05D004452 ORTHO05D005358 9.8e-133 478.4 750 42.1
Oeu043579.4 Olea europaea HOM05D004452 ORTHO05D005358 4.9e-132 476.1 748 40.6
Potri.014G028100 Populus trichocarpa HOM05D004452 ORTHO05D005358 4.9e-132 476.1 753 40.6
HanXRQChr02g0039511 Helianthus annuus HOM05D004452 ORTHO05D005358 3.2e-131 473.4 758 40.5
Manes.18G038000 Manihot esculenta HOM05D004452 ORTHO05D005358 9.2e-131 471.9 755 40.4
COL.COLO4_26520 Corchorus olitorius HOM05D004452 ORTHO05D005358 1.6e-130 471.1 746 39.9
Duzib093G1704 Durio zibethinus HOM05D004452 ORTHO05D005358 4.6e-130 469.5 759 40.2
SGA_v2.0_scaffold28G11777 Striga asiatica HOM05D004452 ORTHO05D005358 3.9e-129 466.5 742 41.0
GSVIVG01009484001 Vitis vinifera HOM05D004452 ORTHO05D005358 1.1e-128 464.9 736 40.9
CiPaw.15G055600 Carya illinoinensis HOM05D004452 ORTHO05D005358 1.9e-128 464.2 750 40.9
Cfa018088 Carpinus fangiana HOM05D004452 ORTHO05D005358 2.5e-128 463.8 756 40.5
DCAR_019448 Daucus carota HOM05D004452 ORTHO05D005358 2.5e-128 463.8 751 40.7
Thecc.08G005800 Theobroma cacao HOM05D004452 ORTHO05D005358 2.5e-128 463.8 765 40.5
Cc10_g04060 Coffea canephora HOM05D004452 ORTHO05D005358 3.3e-128 463.4 747 41.4
Atru.chr13.704 Acer truncatum HOM05D004452 ORTHO05D005358 5.6e-128 462.6 754 39.9
Lalb_Chr11g0062611 Lupinus albus HOM05D004452 ORTHO05D005358 7.3e-128 462.2 756 39.8
TAR381G1434 Trochodendron aralioides HOM05D004452 ORTHO05D005358 9.5e-128 461.8 761 39.3
Lj4A59T44 Lonicera japonica HOM05D004452 ORTHO05D005358 2.1e-127 460.7 748 40.6
Sc15g0006090 Simmondsia chinensis HOM05D004452 ORTHO05D005358 2.1e-127 460.7 752 41.0
CAN.G1030.10 Capsicum annuum HOM05D004452 ORTHO05D005358 3.6e-127 459.9 754 40.6
Nitab4.5_0002760g0030 Nicotiana tabacum HOM05D004452 ORTHO05D005358 6.2e-127 459.1 751 40.2
ECA247G0253 Erigeron canadensis HOM05D004452 ORTHO05D005358 8.1e-127 458.8 765 39.5
vmacro21515 Vaccinium macrocarpon HOM05D004452 ORTHO05D005358 1.4e-126 458.0 750 40.1
Ciclev10000290m.g Citrus clementina HOM05D004452 ORTHO05D005358 3.1e-126 456.8 748 40.0
Gohir.D05G206300 Gossypium hirsutum HOM05D004452 ORTHO05D005358 4.0e-126 456.4 725 41.2
Nitab4.5_0000287g0200 Nicotiana tabacum HOM05D004452 ORTHO05D005358 6.8e-126 455.7 751 40.2
Gorai.009G212700 Gossypium raimondii HOM05D004452 ORTHO05D005358 2.0e-125 454.1 724 41.3
MBI06_g02568_MAGBIO Magnolia biondii HOM05D004452 ORTHO05D005358 2.6e-125 453.8 759 39.5
PSO170G2588 Papaver somniferum HOM05D004452 ORTHO05D005358 2.6e-125 453.8 754 38.9
Psat5g042600 Pisum sativum HOM05D004452 ORTHO05D005358 2.6e-125 453.8 747 40.4
PGSC0003DMG400007967 Solanum tuberosum HOM05D004452 ORTHO05D005358 1.7e-124 451.1 756 39.4
TPR.G24198 Trifolium pratense HOM05D004452 ORTHO05D005358 1.7e-124 451.1 744 39.2
Actinidia23285 Actinidia chinensis HOM05D004452 ORTHO05D005358 6.4e-124 449.1 749 39.0
Gohir.A05G203100 Gossypium hirsutum HOM05D004452 ORTHO05D005358 6.4e-124 449.1 727 40.0
Ca_15944_v3 Cicer arietinum L. HOM05D004452 ORTHO05D005358 8.4e-124 448.7 747 39.1
AagrBONN_evm.TU.Sc2ySwM_228.4151 Anthoceros agrestis HOM05D004452 ORTHO05D005358 1.1e-123 448.4 751 39.9
THA.LOC104822853 Tarenaya hassleriana HOM05D004452 ORTHO05D005358 2.4e-123 447.2 758 39.7
MELO3C016756.2 Cucumis melo HOM05D004452 ORTHO05D005358 4.1e-123 446.4 757 39.9
CsaV3_4G034360 Cucumis sativus L. HOM05D004452 ORTHO05D005358 4.1e-123 446.4 770 39.4
Lj1g0004160 Lotus japonicus HOM05D004452 ORTHO05D005358 4.1e-123 446.4 747 39.2
QL02p004676 Quercus lobata HOM05D004452 ORTHO05D005358 4.1e-123 446.4 754 39.4
Migut.N02714 Erythranthe guttata HOM05D004452 ORTHO05D005358 5.4e-123 446.0 764 39.5
Carub.0008s0587 Capsella rubella HOM05D004452 ORTHO05D005358 1.2e-122 444.9 767 39.2
Rhsim06G0050800 Rhododendron simsii HOM05D004452 ORTHO05D005358 1.6e-122 444.5 769 38.8
CSS0026728 Camellia sinensis var. sinensis HOM05D004452 ORTHO05D005358 2.1e-122 444.1 750 39.6
Medtr3g101790 Medicago truncatula HOM05D004452 ORTHO05D005358 2.7e-122 443.7 747 38.8
Prupe.1G434400 Prunus persica HOM05D004452 ORTHO05D005358 2.7e-122 443.7 765 38.8
ClCG05G019920 Citrullus lanatus HOM05D004452 ORTHO05D005358 4.6e-122 443.0 756 38.8
SMO356G0003 Selaginella moellendorffii HOM05D004452 ORTHO05D005358 4.6e-122 443.0 658 43.0
Glyma.06G040600 Glycine max HOM05D004452 ORTHO05D005358 7.8e-122 442.2 761 39.0
MD15G1081700 Malus domestica HOM05D004452 ORTHO05D005358 7.8e-122 442.2 760 39.5
PSO210G0441 Papaver somniferum HOM05D004452 ORTHO05D005358 7.8e-122 442.2 754 38.2
PGR031G1897 Punica granatum HOM05D004452 ORTHO05D005358 1.0e-121 441.8 758 40.1
ATR1126G044 Amborella trichopoda HOM05D004452 ORTHO05D005358 1.7e-121 441.0 777 38.4
CARHR181170 Cardamine hirsuta HOM05D004452 ORTHO05D005358 2.3e-121 440.7 768 39.2
Sp2g07660 Schrenkiella parvula HOM05D004452 ORTHO05D005358 3.9e-121 439.9 766 39.2
CDE08G0013 Ceratophyllum demersum HOM05D004452 ORTHO05D005358 5.1e-121 439.5 747 40.0
Aqoxy5G01224 Aquilegia oxysepala HOM05D004452 ORTHO05D005358 1.1e-120 438.3 755 38.3
AT5G42920 Arabidopsis thaliana HOM05D004452 ORTHO05D005358 1.9e-120 437.6 763 38.4
MSTRG.24335 Avicennia marina HOM05D004452 ORTHO05D005358 2.5e-120 437.2 769 39.3
Glyma.04G039400 Glycine max HOM05D004452 ORTHO05D005358 7.3e-120 435.6 761 37.8
Solyc04g078830.3 Solanum lycopersicum HOM05D004452 ORTHO05D005358 7.3e-120 435.6 746 38.3
VMungo1309G1308 Vigna mungo HOM05D004452 ORTHO05D005358 9.6e-120 435.3 749 39.3
CANSAT11G1000 Cannabis sativa HOM05D004452 ORTHO05D005358 1.2e-119 434.9 763 38.7
RcHm_v2.0_Chr6g0308041 Rosa chinensis HOM05D004452 ORTHO05D005358 1.6e-119 434.5 753 39.6
Dinv39307 Davidia involucrata HOM05D004452 ORTHO05D005358 2.8e-119 433.7 752 38.2
AL8G17930 Arabidopsis lyrata HOM05D004452 ORTHO05D005358 6.2e-119 432.6 764 38.9
Phvul.009G065600 Phaseolus vulgaris HOM05D004452 ORTHO05D005358 8.1e-119 432.2 763 37.7
Aa31LG9G12980 Aethionema arabicum HOM05D004452 ORTHO05D005358 4.0e-118 429.9 769 38.1
arahy.Tifrunner.gnm1.ann1.Y5ZCTQ Arachis hypogaea HOM05D004452 ORTHO05D005358 4.0e-118 429.9 754 38.3
Sed0009272 Sechium edule HOM05D004452 ORTHO05D005358 1.2e-117 428.3 749 38.6
arahy.Tifrunner.gnm1.ann1.UAD7VL Arachis hypogaea HOM05D004452 ORTHO05D005358 1.5e-117 427.9 754 38.3
Eucgr.F02336 Eucalyptus grandis HOM05D004452 ORTHO05D005358 1.5e-117 427.9 752 38.7
EL10Ac1g01836 Beta vulgaris HOM05D004452 ORTHO05D005358 2.6e-117 427.2 760 37.8
FvH4_2g34320 Fragaria vesca HOM05D004452 ORTHO05D005358 1.3e-116 424.9 753 39.2
TWI56G0235 Tripterygium wilfordii HOM05D004452 ORTHO05D005358 1.7e-116 424.5 764 38.7
TWI36G0852 Tripterygium wilfordii HOM05D004452 ORTHO05D005358 2.2e-116 424.1 763 39.2
BraA06t27686Z Brassica rapa HOM05D004452 ORTHO05D005358 4.9e-116 422.9 758 38.9
BcaC06g31738 Brassica carinata HOM05D004452 ORTHO05D005358 6.4e-116 422.5 756 38.5
Cpa.g.sc49.27 Carica papaya HOM05D004452 ORTHO05D005358 6.4e-116 422.5 750 37.7
SHI08268 Sapria himalayana HOM05D004452 ORTHO05D005358 6.4e-116 422.5 762 39.1
Thhalv10003147m.g Eutrema salsugineum HOM05D004452 ORTHO05D005358 8.4e-116 422.2 756 39.0
Hma1.2p1_2046F.1_g312410 Hydrangea macrophylla HOM05D004452 ORTHO05D005358 1.1e-115 421.8 777 37.5
Peaxi162Scf00252g00221 Petunia axillaris HOM05D004452 ORTHO05D005358 2.4e-115 420.6 765 37.5
A06p48170 Brassica napus HOM05D004452 ORTHO05D005358 1.2e-114 418.3 758 38.5
FAN20G1510 Fragaria x ananassa HOM05D004452 ORTHO05D005358 1.2e-114 418.3 753 38.9
BcaC02g10792 Brassica carinata HOM05D004452 ORTHO05D005358 2.7e-114 417.2 760 38.7
C04p25060 Brassica napus HOM05D004452 ORTHO05D005358 2.7e-114 417.2 760 38.7
BolC4t24007H Brassica oleracea HOM05D004452 ORTHO05D005358 2.7e-114 417.2 760 38.7
FAN15G1326 Fragaria x ananassa HOM05D004452 ORTHO05D005358 3.5e-114 416.8 751 38.9
AUR62041892 Chenopodium quinoa HOM05D004452 ORTHO05D005358 2.3e-113 414.1 759 37.7
FAN27G2914 Fragaria x ananassa HOM05D004452 ORTHO05D005358 6.6e-113 412.5 751 38.5
Dinv35952 Davidia involucrata HOM05D004452 ORTHO05D005358 7.3e-112 409.1 562 43.6
Zm00001eb255990 Zea mays HOM05D004452 ORTHO05D005358 4.0e-110 403.3 747 38.7
FAN24G0195 Fragaria x ananassa HOM05D004452 ORTHO05D005358 5.3e-110 402.9 802 36.9
Hund23866 Selenicereus undatus HOM05D004452 ORTHO05D005358 4.4e-109 399.8 771 36.6
CDE04G2017 Ceratophyllum demersum HOM05D004452 ORTHO05D005358 2.4e-107 394.0 640 41.7
CiPaw.16G042900 Carya illinoinensis HOM05D004452 ORTHO05D005358 3.1e-102 377.1 453 48.3
Os02g0767100 Oryza sativa ssp. japonica HOM05D004452 ORTHO05D005358 3.8e-100 370.2 460 46.5
Lalb_Chr08g0245391 Lupinus albus HOM05D004452 ORTHO05D005358 4.9e-100 369.8 462 45.5
CANSAT11G0118 Cannabis sativa HOM05D004452 ORTHO05D005358 6.4e-100 369.4 455 45.9
Glyma.17G241800 Glycine max HOM05D004452 ORTHO05D005358 6.0e-98 362.8 467 43.3
Phvul.001G022500 Phaseolus vulgaris HOM05D004452 ORTHO05D005358 5.6e-96 356.3 467 43.3
THA.LOC104812571 Tarenaya hassleriana HOM05D004452 ORTHO05D005358 1.6e-95 354.8 477 44.0
Glyma.14G083300 Glycine max HOM05D004452 ORTHO05D005358 2.8e-95 354.0 467 43.3
Oeu023860.1 Olea europaea HOM05D004452 ORTHO05D005358 3.7e-95 353.6 460 43.7
Sc02g0007190 Simmondsia chinensis HOM05D004452 ORTHO05D005358 9.0e-94 349.0 470 44.0
arahy.Tifrunner.gnm1.ann1.IXK305 Arachis hypogaea HOM05D004452 ORTHO05D005358 2.6e-93 347.4 455 42.9
arahy.Tifrunner.gnm1.ann1.VB8FSW Arachis hypogaea HOM05D004452 ORTHO05D005358 2.6e-93 347.4 455 42.9
AagrBONN_evm.TU.Sc2ySwM_117.2784 Anthoceros agrestis HOM05D004452 ORTHO05D005358 4.9e-92 343.2 459 43.1
VMungo0647G1811 Vigna mungo HOM05D004452 ORTHO05D005358 1.1e-91 342.0 464 42.7
Thhalv10011479m.g Eutrema salsugineum HOM05D004452 ORTHO05D005358 9.3e-91 339.0 443 44.0
Sp1g34090 Schrenkiella parvula HOM05D004452 ORTHO05D005358 1.6e-87 328.2 448 42.6
AT1G45233 Arabidopsis thaliana HOM05D004452 ORTHO05D005358 1.4e-86 325.1 473 41.6
Carub.0001s3568 Capsella rubella HOM05D004452 ORTHO05D005358 1.8e-86 324.7 457 42.0
Aa31sc108G100 Aethionema arabicum HOM05D004452 ORTHO05D005358 5.3e-86 323.2 461 43.0
AL1G52910 Arabidopsis lyrata HOM05D004452 ORTHO05D005358 9.0e-86 322.4 457 41.1
MSTRG.25087 Avicennia marina HOM05D004452 ORTHO05D005358 9.0e-86 322.4 414 45.4
CARHR036370 Cardamine hirsuta HOM05D004452 ORTHO05D005358 1.8e-81 308.1 447 41.4
BraA10t42942Z Brassica rapa HOM05D004452 ORTHO05D005358 3.0e-81 307.4 446 39.9
A10p06900 Brassica napus HOM05D004452 ORTHO05D005358 1.9e-80 304.7 448 40.0
BolC6t35279H Brassica oleracea HOM05D004452 ORTHO05D005358 8.2e-79 299.3 448 40.0
BcaC08g42910 Brassica carinata HOM05D004452 ORTHO05D005358 1.1e-78 298.9 448 40.2
C06p01470 Brassica napus HOM05D004452 ORTHO05D005358 1.8e-78 298.1 448 40.2
SalBow8G3632 Salvia bowleyana HOM05D004452 ORTHO05D005358 1.5e-77 295.0 601 36.1
SalBow8G0374 Salvia bowleyana HOM05D004452 ORTHO05D005358 2.6e-77 294.3 601 36.1
Sed0026470 Sechium edule HOM05D004452 ORTHO05D005358 2.7e-74 284.3 460 39.1
unitig_26.g10021 Utricularia gibba HOM05D002518 ORTHO05D002630 1.4e-73 282.0 462 39.2
Nn7g37344 Nelumbo nucifera HOM05D004452 ORTHO05D005358 1.0e-65 255.8 298 47.3
SEGI_30975 Sequoiadendron giganteum HOM05D004452 ORTHO05D005358 5.2e-65 253.4 337 45.4
HPP92_016717 Vanilla planifolia HOM05D004452 ORTHO05D005358 4.4e-64 250.4 686 31.5
BcaB07g33871 Brassica carinata HOM05D004452 ORTHO05D005358 7.4e-64 249.6 452 36.3
unitig_749.g13678 Utricularia gibba HOM05D004452 ORTHO05D005358 1.7e-60 238.4 668 30.4
TAR625G1031 Trochodendron aralioides HOM05D004452 ORTHO05D005358 4.7e-58 230.3 263 48.3
Nn3g17073 Nelumbo nucifera HOM05D004452 ORTHO05D005358 5.2e-57 226.9 236 53.8
MCO13G423 Micromonas commoda HOM05D004452 ORTHO05D005358 2.7e-53 214.5 737 30.4
MD08G1099200 Malus domestica HOM05D004452 ORTHO05D005358 2.2e-52 211.5 195 55.4
Sopen04g032430 Solanum pennellii HOM05D004452 ORTHO05D005358 4.0e-49 200.7 530 32.3
CBR_g24409 Chara braunii HOM05D004452 ORTHO05D005358 1.4e-46 192.2 361 37.1
AUR62038817 Chenopodium quinoa HOM05D004452 ORTHO05D005358 2.5e-43 181.4 490 31.6
Potri.002G125300 Populus trichocarpa HOM05D004452 ORTHO05D005358 1.4e-41 175.6 336 37.5
Cre17.g705550 Chlamydomonas reinhardtii HOM05D004452 ORTHO05D005358 2.3e-36 158.3 456 28.7
SalBow8G2832 Salvia bowleyana HOM05D004452 ORTHO05D005358 6.6e-36 156.8 150 50.0
SalBow8G5418 Salvia bowleyana HOM05D004452 ORTHO05D005358 6.6e-36 156.8 150 50.0
MD08G1099300 Malus domestica HOM05D004452 ORTHO05D005358 5.0e-20 104.0 147 44.2
SEGI_02411 Sequoiadendron giganteum HOM05D004452 ORTHO05D000001 2.1e-13 82.0 319 28.2
Aa31LG7G10540 Aethionema arabicum HOM05D004452 ORTHO05D005358 2.5e-11 75.1 95 45.3
Aa31LG7G10550 Aethionema arabicum HOM05D004452 ORTHO05D005358 1.2e-10 72.8 102 45.1


User provided reference genes

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