Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c7_22470 Physcomitrium patens HOM05D004785 ORTHO05D005704 5.6e-243 844.0 462 100.0
Mapoly0063s0041 Marchantia polymorpha HOM05D004785 ORTHO05D005704 1.3e-111 407.5 471 54.8
Dinv43463 Davidia involucrata HOM05D004785 ORTHO05D005704 4.5e-99 365.9 483 49.5
HanXRQChr15g0479141 Helianthus annuus HOM05D004785 ORTHO05D005704 4.2e-97 359.4 472 49.2
Hma1.2p1_0845F.1_g227490 Hydrangea macrophylla HOM05D004785 ORTHO05D005704 9.3e-97 358.2 478 51.0
GSVIVG01032056001 Vitis vinifera HOM05D004785 ORTHO05D005704 1.6e-96 357.5 482 52.3
Lalb_Chr19g0132061 Lupinus albus HOM05D004785 ORTHO05D005704 6.1e-96 355.5 481 49.3
Lalb_Chr01g0008111 Lupinus albus HOM05D004785 ORTHO05D005704 1.3e-95 354.4 482 49.2
Psat4g149360 Pisum sativum HOM05D004785 ORTHO05D005704 3.0e-95 353.2 478 47.9
Dinv09378 Davidia involucrata HOM05D004785 ORTHO05D005704 5.1e-95 352.4 492 48.0
FvH4_7g00680 Fragaria vesca HOM05D004785 ORTHO05D005704 1.1e-94 351.3 476 48.3
FAN03G2451 Fragaria x ananassa HOM05D004785 ORTHO05D005704 1.1e-94 351.3 475 48.4
FAN06G5068 Fragaria x ananassa HOM05D004785 ORTHO05D005704 1.1e-94 351.3 476 48.3
Medtr8g036890 Medicago truncatula HOM05D004785 ORTHO05D005704 1.1e-94 351.3 479 49.9
Aqoxy1G00294 Aquilegia oxysepala HOM05D004785 ORTHO05D005704 1.5e-94 350.9 474 48.5
Gorai.004G035900 Gossypium raimondii HOM05D004785 ORTHO05D005704 1.9e-94 350.5 473 49.5
FAN01G2822 Fragaria x ananassa HOM05D004785 ORTHO05D005704 2.5e-94 350.1 475 48.4
FAN01G2446 Fragaria x ananassa HOM05D004785 ORTHO05D005704 4.3e-94 349.4 475 48.2
FAN10G3515 Fragaria x ananassa HOM05D004785 ORTHO05D005704 5.7e-94 349.0 476 48.1
RcHm_v2.0_Chr1g0314901 Rosa chinensis HOM05D004785 ORTHO05D005704 9.7e-94 348.2 476 47.9
CAN.G170.130 Capsicum annuum HOM05D004785 ORTHO05D005704 1.6e-93 347.4 483 47.6
Cc02_g27530 Coffea canephora HOM05D004785 ORTHO05D005704 1.6e-93 347.4 483 48.0
Gohir.D08G037900 Gossypium hirsutum HOM05D004785 ORTHO05D005704 1.6e-93 347.4 473 48.8
TPR.G21739 Trifolium pratense HOM05D004785 ORTHO05D005704 2.8e-93 346.7 476 49.4
MELO3C023531.2 Cucumis melo HOM05D004785 ORTHO05D005704 4.8e-93 345.9 483 45.3
CiPaw.13G002800 Carya illinoinensis HOM05D004785 ORTHO05D005704 6.3e-93 345.5 478 47.5
Thhalv10010376m.g Eutrema salsugineum HOM05D004785 ORTHO05D005704 6.3e-93 345.5 479 46.3
Carub.0005s1846 Capsella rubella HOM05D004785 ORTHO05D005704 8.2e-93 345.1 481 45.9
Thecc.01G414000 Theobroma cacao HOM05D004785 ORTHO05D005704 8.2e-93 345.1 485 46.4
Phvul.005G036800 Phaseolus vulgaris HOM05D004785 ORTHO05D005704 1.1e-92 344.7 478 46.4
VMungo1080G1418 Vigna mungo HOM05D004785 ORTHO05D005704 1.1e-92 344.7 482 46.1
THA.LOC104801982 Tarenaya hassleriana HOM05D004785 ORTHO05D005704 2.4e-92 343.6 482 47.3
CSS0016942 Camellia sinensis var. sinensis HOM05D004785 ORTHO05D005704 4.1e-92 342.8 475 50.1
Pp3c11_4770 Physcomitrium patens HOM05D004785 ORTHO05D005704 4.1e-92 342.8 342 60.2
CSS0030425 Camellia sinensis var. sinensis HOM05D004785 ORTHO05D005704 5.3e-92 342.4 475 50.1
Sed0027076 Sechium edule HOM05D004785 ORTHO05D005704 5.3e-92 342.4 477 45.3
Glyma.15G272000 Glycine max HOM05D004785 ORTHO05D005704 6.9e-92 342.0 471 48.0
Rhsim01G0130900 Rhododendron simsii HOM05D004785 ORTHO05D005704 6.9e-92 342.0 474 49.4
CsaV3_7G031250 Cucumis sativus L. HOM05D004785 ORTHO05D005704 1.2e-91 341.3 479 45.7
AT3G52120 Arabidopsis thaliana HOM05D004785 ORTHO05D005704 1.5e-91 340.9 477 46.5
Potri.001G269900 Populus trichocarpa HOM05D004785 ORTHO05D005704 1.5e-91 340.9 483 46.8
Prupe.2G009600 Prunus persica HOM05D004785 ORTHO05D005704 1.5e-91 340.9 476 47.1
Glyma.08G152600 Glycine max HOM05D004785 ORTHO05D005704 2.0e-91 340.5 483 47.2
ECA246G0971 Erigeron canadensis HOM05D004785 ORTHO05D005704 3.4e-91 339.7 466 47.4
arahy.Tifrunner.gnm1.ann1.59DMFX Arachis hypogaea HOM05D004785 ORTHO05D005704 4.5e-91 339.3 481 47.0
TWI73G0859 Tripterygium wilfordii HOM05D004785 ORTHO05D005704 5.9e-91 339.0 476 50.2
arahy.Tifrunner.gnm1.ann1.M8XEBR Arachis hypogaea HOM05D004785 ORTHO05D005704 7.7e-91 338.6 480 47.7
Nn7g36099 Nelumbo nucifera HOM05D004785 ORTHO05D005704 7.7e-91 338.6 477 47.0
Ciclev10031609m.g Citrus clementina HOM05D004785 ORTHO05D005704 2.2e-90 337.0 478 50.2
C08p27390 Brassica napus HOM05D004785 ORTHO05D005704 6.5e-90 335.5 475 46.7
BolC8t50356H Brassica oleracea HOM05D004785 ORTHO05D005704 6.5e-90 335.5 475 46.7
MBI04_g14260_MAGBIO Magnolia biondii HOM05D004785 ORTHO05D005704 6.5e-90 335.5 465 47.3
Solyc01g086890.3 Solanum lycopersicum HOM05D004785 ORTHO05D005704 8.5e-90 335.1 482 45.6
vmacro21177 Vaccinium macrocarpon HOM05D004785 ORTHO05D005704 8.5e-90 335.1 474 51.3
Sp5g10160 Schrenkiella parvula HOM05D004785 ORTHO05D005704 1.1e-89 334.7 482 46.3
Hund03669 Selenicereus undatus HOM05D004785 ORTHO05D005704 1.1e-89 334.7 475 45.1
PGSC0003DMG400025264 Solanum tuberosum HOM05D004785 ORTHO05D005704 1.4e-89 334.3 482 45.6
CANSAT11G0943 Cannabis sativa HOM05D004785 ORTHO05D005704 1.9e-89 334.0 470 49.4
Sopen01g033900 Solanum pennellii HOM05D004785 ORTHO05D005704 2.5e-89 333.6 483 46.4
Migut.N01482 Erythranthe guttata HOM05D004785 ORTHO05D005704 5.5e-89 332.4 477 45.9
Manes.10G146300 Manihot esculenta HOM05D004785 ORTHO05D005704 7.2e-89 332.0 479 48.0
Sabra09G0047800 Salix brachista HOM05D004785 ORTHO05D005704 9.4e-89 331.6 487 45.6
Manes.07G003900 Manihot esculenta HOM05D004785 ORTHO05D005704 1.2e-88 331.3 487 50.1
SalBow4G2313 Salvia bowleyana HOM05D004785 ORTHO05D005704 1.2e-88 331.3 468 46.4
SalBow5G0866 Salvia bowleyana HOM05D004785 ORTHO05D005704 1.2e-88 331.3 476 49.4
SalBow5G5194 Salvia bowleyana HOM05D004785 ORTHO05D005704 1.2e-88 331.3 476 49.4
BcaNung06094 Brassica carinata HOM05D004785 ORTHO05D005704 1.6e-88 330.9 476 46.4
A09p45180 Brassica napus HOM05D004785 ORTHO05D005704 1.6e-88 330.9 472 46.0
BraA09t39981Z Brassica rapa HOM05D004785 ORTHO05D005704 1.6e-88 330.9 471 46.1
Lj3g0000927 Lotus japonicus HOM05D004785 ORTHO05D005704 1.6e-88 330.9 476 46.2
Lj3g0006296 Lotus japonicus HOM05D004785 ORTHO05D005704 1.6e-88 330.9 479 46.3
Atru.chr11.2638 Acer truncatum HOM05D004785 ORTHO05D005704 2.1e-88 330.5 485 44.7
AL5G32690 Arabidopsis lyrata HOM05D004785 ORTHO05D005704 2.7e-88 330.1 502 44.0
CDE10G0170 Ceratophyllum demersum HOM05D004785 ORTHO05D005704 2.7e-88 330.1 475 44.8
Actinidia20681 Actinidia chinensis HOM05D004785 ORTHO05D005704 6.1e-88 328.9 479 48.2
Aa31LG10G7210 Aethionema arabicum HOM05D004785 ORTHO05D005704 1.0e-87 328.2 505 44.2
Cpa.g.sc234.14 Carica papaya HOM05D004785 ORTHO05D005704 1.4e-87 327.8 512 44.5
AUR62022266 Chenopodium quinoa HOM05D004785 ORTHO05D005704 1.4e-87 327.8 474 48.5
Lsat_1_v5_gn_4_68280 Lactuca sativa HOM05D004785 ORTHO05D005704 1.4e-87 327.8 458 45.9
SEGI_00751 Sequoiadendron giganteum HOM05D004785 ORTHO05D005704 1.4e-87 327.8 483 47.0
PGR044G1403 Punica granatum HOM05D004785 ORTHO05D005704 2.3e-87 327.0 476 46.6
QL04p005208 Quercus lobata HOM05D004785 ORTHO05D005704 2.3e-87 327.0 478 45.8
TWI09G1360 Tripterygium wilfordii HOM05D004785 ORTHO05D005704 2.3e-87 327.0 478 49.0
TAR633G2005 Trochodendron aralioides HOM05D004785 ORTHO05D005704 2.3e-87 327.0 487 48.9
Gohir.A08G027150 Gossypium hirsutum HOM05D004785 ORTHO05D005704 3.0e-87 326.6 474 47.7
Hund07648 Selenicereus undatus HOM05D004785 ORTHO05D005704 5.1e-87 325.9 476 49.8
Duzib138G0206 Durio zibethinus HOM05D004785 ORTHO05D005704 1.5e-86 324.3 484 46.1
MSTRG.20603 Avicennia marina HOM05D004785 ORTHO05D005704 3.3e-86 323.2 487 44.1
Nn2g15504 Nelumbo nucifera HOM05D004785 ORTHO05D005704 5.7e-86 322.4 478 45.4
Ca_23868_v3 Cicer arietinum L. HOM05D004785 ORTHO05D005704 7.4e-86 322.0 478 49.6
Potri.009G064600 Populus trichocarpa HOM05D004785 ORTHO05D005704 7.4e-86 322.0 486 44.7
Nitab4.5_0006850g0010 Nicotiana tabacum HOM05D004785 ORTHO05D005704 1.3e-85 321.2 461 45.8
TAR636G1066 Trochodendron aralioides HOM05D004785 ORTHO05D005704 1.3e-85 321.2 466 47.4
Sabra16G0165300 Salix brachista HOM05D004785 ORTHO05D005704 1.7e-85 320.9 498 48.8
Peaxi162Scf00428g00096 Petunia axillaris HOM05D004785 ORTHO05D005704 2.8e-85 320.1 479 50.1
ATR0733G146 Amborella trichopoda HOM05D004785 ORTHO05D005704 3.7e-85 319.7 472 50.8
Sc15g0001680 Simmondsia chinensis HOM05D004785 ORTHO05D005704 1.4e-84 317.8 467 49.5
MD07G1006500 Malus domestica HOM05D004785 ORTHO05D005704 6.9e-84 315.5 499 44.9
MBI01_g36433_MAGBIO Magnolia biondii HOM05D004785 ORTHO05D005704 2.0e-83 313.9 479 44.7
Duzib268G1355 Durio zibethinus HOM05D004785 ORTHO05D005704 7.7e-83 312.0 481 43.7
Actinidia21563 Actinidia chinensis HOM05D004785 ORTHO05D005704 2.2e-82 310.5 465 48.6
CDE10G1291 Ceratophyllum demersum HOM05D004785 ORTHO05D005704 6.5e-82 308.9 466 43.8
PSO339G6673 Papaver somniferum HOM05D004785 ORTHO05D005704 6.5e-82 308.9 479 48.6
HPP92_022791 Vanilla planifolia HOM05D004785 ORTHO05D005704 1.4e-81 307.8 482 47.1
SMO358G0717 Selaginella moellendorffii HOM05D004785 ORTHO05D005704 1.6e-80 304.3 483 44.5
Eucgr.G03395 Eucalyptus grandis HOM05D004785 ORTHO05D005704 2.1e-80 303.9 478 47.3
unitig_61.g26449 Utricularia gibba HOM05D004785 ORTHO05D005704 2.1e-80 303.9 463 44.3
PSO384G1867 Papaver somniferum HOM05D004785 ORTHO05D005704 4.7e-80 302.8 476 47.7
SGA_v2.0_scaffold95G28788 Striga asiatica HOM05D004785 ORTHO05D005704 4.7e-80 302.8 497 46.1
CBR_g19876 Chara braunii HOM05D004785 ORTHO05D005704 1.4e-79 301.2 425 47.3
EL10Ac9g21166 Beta vulgaris HOM05D004785 ORTHO05D005704 8.8e-79 298.5 458 49.3
CDE04G1996 Ceratophyllum demersum HOM05D004785 ORTHO05D005704 1.1e-76 291.6 425 44.5
AUR62031974 Chenopodium quinoa HOM05D004785 ORTHO05D005704 1.8e-76 290.8 464 45.5
COL.COLO4_23900 Corchorus olitorius HOM05D004785 ORTHO05D005704 4.1e-76 289.7 485 46.8
Zm00001eb325220 Zea mays HOM05D004785 ORTHO05D005704 3.2e-73 280.0 468 44.9
Nitab4.5_0001542g0040 Nicotiana tabacum HOM05D004785 ORTHO05D005704 1.8e-71 274.2 337 50.1
unitig_0.g1380 Utricularia gibba HOM05D004785 ORTHO05D005704 1.2e-70 271.6 347 52.2
Pp3c11_4670 Physcomitrium patens HOM05D004785 ORTHO05D005704 2.6e-70 270.4 249 64.7
Lj7C568G16 Lonicera japonica HOM05D004785 ORTHO05D005704 9.7e-70 268.5 467 42.6
Sed0007108 Sechium edule HOM05D004785 ORTHO05D005704 2.5e-57 227.3 409 38.9
CARHR161860 Cardamine hirsuta HOM05D004785 ORTHO05D005704 1.8e-52 211.1 127 80.3
Eucgr.J01259 Eucalyptus grandis HOM05D004785 ORTHO05D005704 7.0e-52 209.1 411 42.1
Oeu014580.2 Olea europaea HOM05D004785 ORTHO05D005704 7.0e-52 209.1 415 40.2
DCAR_029653 Daucus carota HOM05D004785 ORTHO05D005704 8.6e-50 202.2 454 35.7
AagrBONN_evm.TU.Sc2ySwM_228.206 Anthoceros agrestis HOM05D004785 ORTHO05D005704 2.2e-45 187.6 294 46.9
Eucgr.B02099 Eucalyptus grandis HOM05D004785 ORTHO05D005704 5.4e-44 183.0 126 71.4
Medtr8g036260 Medicago truncatula HOM05D004785 ORTHO05D005704 1.8e-39 167.9 289 43.9
SHI47607 Sapria himalayana HOM05D004785 ORTHO05D005704 6.0e-35 152.9 287 37.6
SHI47732 Sapria himalayana HOM05D004785 ORTHO05D005704 6.0e-35 152.9 287 37.6
Cre16.g686000 Chlamydomonas reinhardtii HOM05D004785 ORTHO05D005704 3.3e-33 147.1 140 55.0
MD02G1315400 Malus domestica HOM05D004785 ORTHO05D005704 9.5e-33 145.6 293 39.6
Medtr8g036255 Medicago truncatula HOM05D004785 ORTHO05D005704 1.7e-29 134.8 74 85.1
Haze_03237 Corylus avellana HOM05D004785 ORTHO05D005704 2.9e-29 134.0 210 45.2
ClCG09G004330 Citrullus lanatus HOM05D004785 ORTHO05D005704 1.3e-26 125.2 69 84.1
Gohir.D08G166700 Gossypium hirsutum HOM05D004785 ORTHO05D005704 2.3e-26 124.4 476 30.5
Gorai.004G174100 Gossypium raimondii HOM05D004785 ORTHO05D005704 2.5e-25 120.9 476 30.3
DCAR_029646 Daucus carota HOM05D004785 ORTHO05D005704 1.8e-23 114.8 68 75.0
A04p07240 Brassica napus HOM05D004785 ORTHO05D005704 7.6e-22 109.4 69 76.8
Eucgr.A02263 Eucalyptus grandis HOM05D004785 ORTHO05D005704 3.8e-21 107.1 72 70.8
Gohir.A08G145800 Gossypium hirsutum HOM05D004785 ORTHO05D005704 6.0e-19 99.8 380 30.0
BraA04t16419Z Brassica rapa HOM05D004785 ORTHO05D005704 2.5e-17 94.4 66 69.7
TAR623G0421 Trochodendron aralioides HOM05D004785 ORTHO05D005704 2.5e-17 94.4 57 77.2
TAR623G0847 Trochodendron aralioides HOM05D004785 ORTHO05D005704 2.5e-17 94.4 57 77.2
BcaC02g09278 Brassica carinata HOM05D004785 ORTHO05D005704 1.6e-16 91.7 146 42.5
C04p40800 Brassica napus HOM05D004785 ORTHO05D005704 1.6e-16 91.7 146 42.5
BolC4t25664H Brassica oleracea HOM05D004785 ORTHO05D005704 4.7e-16 90.1 142 42.3
MCO15G372 Micromonas commoda HOM05D004785 ORTHO05D005704 4.0e-15 87.0 447 29.1
AagrBONN_evm.TU.Sc2ySwM_228.74 Anthoceros agrestis HOM05D004785 ORTHO05D005704 3.4e-14 84.0 62 74.2
Oeu006578.1 Olea europaea HOM05D004785 ORTHO05D005704 2.1e-11 74.7 166 34.9
PRCOL_00003511 Prasinoderma coloniale HOM05D005511 ORTHO05D006616 2.6e-06 57.8 62 50.0
Actinidia14137 Actinidia chinensis HOM05D002170 ORTHO05D005003 7.6e-06 56.2 68 38.2
CARHR161850 Cardamine hirsuta HOM05D004785 ORTHO05D005704 7.6e-06 56.2 94 39.4


User provided reference genes

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