Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c7_220 Physcomitrium patens HOM05D004048 ORTHO05D004859 2.9e-202 708.4 360 100.0
AagrBONN_evm.TU.Sc2ySwM_117.1042 Anthoceros agrestis HOM05D004048 ORTHO05D004859 9.7e-142 507.3 336 74.7
AagrBONN_evm.TU.Sc2ySwM_117.2358 Anthoceros agrestis HOM05D004048 ORTHO05D004859 2.8e-141 505.8 336 74.4
SEGI_12250 Sequoiadendron giganteum HOM05D004048 ORTHO05D004859 3.2e-137 492.3 333 73.0
Mapoly0035s0043 Marchantia polymorpha HOM05D004048 ORTHO05D004859 3.3e-134 482.3 335 73.4
Sabra14G0065600 Salix brachista HOM05D004048 ORTHO05D004859 1.7e-130 469.9 324 70.1
Nitab4.5_0000615g0020 Nicotiana tabacum HOM05D004048 ORTHO05D004859 3.8e-130 468.8 347 66.9
COL.COLO4_12778 Corchorus olitorius HOM05D004048 ORTHO05D004859 5.0e-130 468.4 333 69.1
QL04p055532 Quercus lobata HOM05D004048 ORTHO05D004859 5.0e-130 468.4 331 68.9
Actinidia10075 Actinidia chinensis HOM05D004048 ORTHO05D004859 6.5e-130 468.0 340 67.9
SMO144G0210 Selaginella moellendorffii HOM05D004048 ORTHO05D004859 6.5e-130 468.0 329 70.2
Dinv32522 Davidia involucrata HOM05D004048 ORTHO05D004859 8.5e-130 467.6 331 68.6
SGA_v2.0_scaffold4G02279 Striga asiatica HOM05D004048 ORTHO05D004859 1.5e-129 466.8 324 70.1
Duzib268G0835 Durio zibethinus HOM05D004048 ORTHO05D004859 2.5e-129 466.1 340 67.4
CSS0027402 Camellia sinensis var. sinensis HOM05D004048 ORTHO05D004859 3.2e-129 465.7 336 67.3
TWI23G0617 Tripterygium wilfordii HOM05D004048 ORTHO05D004859 3.2e-129 465.7 324 69.1
Aqoxy5G04084 Aquilegia oxysepala HOM05D004048 ORTHO05D004859 4.2e-129 465.3 328 68.9
AT2G46110 Arabidopsis thaliana HOM05D004048 ORTHO05D004859 4.2e-129 465.3 331 68.0
Migut.B01799 Erythranthe guttata HOM05D004048 ORTHO05D004859 4.2e-129 465.3 324 70.4
Potri.014G090500 Populus trichocarpa HOM05D004048 ORTHO05D004859 4.2e-129 465.3 324 69.4
Nn1g01686 Nelumbo nucifera HOM05D004048 ORTHO05D004859 1.2e-128 463.8 350 65.1
CSS0029554 Camellia sinensis var. sinensis HOM05D004048 ORTHO05D004859 1.6e-128 463.4 336 67.0
Sc01g0003210 Simmondsia chinensis HOM05D004048 ORTHO05D004859 1.6e-128 463.4 324 68.8
THA.LOC104817317 Tarenaya hassleriana HOM05D004048 ORTHO05D004859 1.6e-128 463.4 347 66.0
PSO170G0644 Papaver somniferum HOM05D004048 ORTHO05D004859 2.1e-128 463.0 327 68.2
Peaxi162Scf00217g00711 Petunia axillaris HOM05D004048 ORTHO05D004859 2.1e-128 463.0 346 65.9
Sp4g28180 Schrenkiella parvula HOM05D004048 ORTHO05D004859 2.1e-128 463.0 342 66.1
CAN.G439.29 Capsicum annuum HOM05D004048 ORTHO05D004859 2.7e-128 462.6 338 67.5
Thhalv10001521m.g Eutrema salsugineum HOM05D004048 ORTHO05D004859 3.6e-128 462.2 343 65.3
Gohir.D08G154300 Gossypium hirsutum HOM05D004048 ORTHO05D004859 3.6e-128 462.2 344 66.3
Gorai.004G160400 Gossypium raimondii HOM05D004048 ORTHO05D004859 3.6e-128 462.2 344 66.3
Solyc09g007130.3 Solanum lycopersicum HOM05D004048 ORTHO05D004859 3.6e-128 462.2 324 68.8
PGSC0003DMG400002011 Solanum tuberosum HOM05D004048 ORTHO05D004859 3.6e-128 462.2 328 68.0
TAR375G1056 Trochodendron aralioides HOM05D004048 ORTHO05D004859 4.7e-128 461.8 337 66.5
PSO063G1481 Papaver somniferum HOM05D004048 ORTHO05D004859 6.1e-128 461.5 324 68.2
Hund27241 Selenicereus undatus HOM05D004048 ORTHO05D004859 8.0e-128 461.1 326 68.4
EL10Ac1g00354 Beta vulgaris HOM05D004048 ORTHO05D004859 1.4e-127 460.3 324 68.5
Gohir.D08G043100 Gossypium hirsutum HOM05D004048 ORTHO05D004859 1.4e-127 460.3 324 68.5
Manes.05G029300 Manihot esculenta HOM05D004048 ORTHO05D004859 1.4e-127 460.3 322 68.9
Thecc.01G352400 Theobroma cacao HOM05D004048 ORTHO05D004859 1.4e-127 460.3 337 67.1
Gohir.A08G032200 Gossypium hirsutum HOM05D004048 ORTHO05D004859 1.8e-127 459.9 324 67.9
vmacro13227 Vaccinium macrocarpon HOM05D004048 ORTHO05D004859 1.8e-127 459.9 332 68.1
Prupe.2G177600 Prunus persica HOM05D004048 ORTHO05D004859 2.3e-127 459.5 328 68.9
Gorai.004G041700 Gossypium raimondii HOM05D004048 ORTHO05D004859 3.0e-127 459.1 324 68.5
Carub.0004s2881 Capsella rubella HOM05D004048 ORTHO05D004859 5.2e-127 458.4 331 67.1
Sp5g01880 Schrenkiella parvula HOM05D004048 ORTHO05D004859 5.2e-127 458.4 324 69.1
HPP92_005267 Vanilla planifolia HOM05D004048 ORTHO05D004859 5.2e-127 458.4 334 66.5
C08p36390 Brassica napus HOM05D004048 ORTHO05D004859 6.8e-127 458.0 338 66.9
A09p53600 Brassica napus HOM05D004048 ORTHO05D004859 1.5e-126 456.8 338 66.6
Cc02_g21240 Coffea canephora HOM05D004048 ORTHO05D004859 1.5e-126 456.8 322 69.6
Hma1.2p1_0335F.1_g128890 Hydrangea macrophylla HOM05D004048 ORTHO05D004859 1.5e-126 456.8 321 67.6
AL5G43890 Arabidopsis lyrata HOM05D004048 ORTHO05D004859 2.0e-126 456.4 334 67.1
Lj9C589T5 Lonicera japonica HOM05D004048 ORTHO05D004859 2.0e-126 456.4 344 66.0
AUR62004413 Chenopodium quinoa HOM05D004048 ORTHO05D004859 2.6e-126 456.1 324 68.8
Ciclev10020577m.g Citrus clementina HOM05D004048 ORTHO05D004859 2.6e-126 456.1 328 68.0
MBI03_g34597_MAGBIO Magnolia biondii HOM05D004048 ORTHO05D004859 3.4e-126 455.7 329 68.1
BcaC08g45130 Brassica carinata HOM05D004048 ORTHO05D004859 5.7e-126 454.9 341 66.0
A07p25550 Brassica napus HOM05D004048 ORTHO05D004859 5.7e-126 454.9 341 66.0
BraA07t30196Z Brassica rapa HOM05D004048 ORTHO05D004859 5.7e-126 454.9 341 66.0
VMungo0331G0386 Vigna mungo HOM05D004048 ORTHO05D004859 5.7e-126 454.9 328 68.3
BcaC07g40651 Brassica carinata HOM05D004048 ORTHO05D004859 7.5e-126 454.5 338 66.3
C06p27540 Brassica napus HOM05D004048 ORTHO05D004859 7.5e-126 454.5 341 66.0
BolC6t37921H Brassica oleracea HOM05D004048 ORTHO05D004859 7.5e-126 454.5 341 66.0
BolC8t51222H Brassica oleracea HOM05D004048 ORTHO05D004859 7.5e-126 454.5 338 66.3
MD07G1131200 Malus domestica HOM05D004048 ORTHO05D004859 7.5e-126 454.5 343 65.6
CiPaw.02G034800 Carya illinoinensis HOM05D004048 ORTHO05D004859 9.8e-126 454.1 330 67.6
DCAR_025214 Daucus carota HOM05D004048 ORTHO05D004859 1.3e-125 453.8 324 68.8
BcaB02g07374 Brassica carinata HOM05D004048 ORTHO05D004859 1.7e-125 453.4 324 67.9
AT3G61530 Arabidopsis thaliana HOM05D004048 ORTHO05D004859 2.2e-125 453.0 347 64.8
Glyma.07G064600 Glycine max HOM05D004048 ORTHO05D004859 8.3e-125 451.1 331 67.1
Aa31LG10G15450 Aethionema arabicum HOM05D004048 ORTHO05D004859 1.1e-124 450.7 324 67.3
BraA09t40782Z Brassica rapa HOM05D004048 ORTHO05D004859 1.4e-124 450.3 338 66.3
Eucgr.B01988 Eucalyptus grandis HOM05D004048 ORTHO05D004859 3.1e-124 449.1 318 67.6
FAN03G0096 Fragaria x ananassa HOM05D004048 ORTHO05D004859 4.1e-124 448.7 324 69.1
PGR004G0897 Punica granatum HOM05D004048 ORTHO05D004859 4.1e-124 448.7 331 65.9
Duzib138G1147 Durio zibethinus HOM05D004048 ORTHO05D004859 5.4e-124 448.4 362 62.4
CANSAT56G4107 Cannabis sativa HOM05D004048 ORTHO05D004859 1.6e-123 446.8 334 65.9
Haze_15565 Corylus avellana HOM05D004048 ORTHO05D004859 1.6e-123 446.8 340 64.7
RcHm_v2.0_Chr1g0357691 Rosa chinensis HOM05D004048 ORTHO05D004859 1.6e-123 446.8 324 68.5
CsaV3_7G025860 Cucumis sativus L. HOM05D004048 ORTHO05D004859 2.0e-123 446.4 322 66.1
HanXRQChr17g0562171 Helianthus annuus HOM05D004048 ORTHO05D004859 3.5e-123 445.7 327 67.6
Lalb_Chr17g0338041 Lupinus albus HOM05D004048 ORTHO05D004859 4.5e-123 445.3 329 68.4
Oeu054354.2 Olea europaea HOM05D004048 ORTHO05D004859 4.5e-123 445.3 372 61.3
arahy.Tifrunner.gnm1.ann1.8G3C0P Arachis hypogaea HOM05D004048 ORTHO05D004859 5.9e-123 444.9 324 67.0
arahy.Tifrunner.gnm1.ann1.9CR96V Arachis hypogaea HOM05D004048 ORTHO05D004859 1.0e-122 444.1 324 66.7
FAN10G1698 Fragaria x ananassa HOM05D004048 ORTHO05D004859 1.3e-122 443.7 324 68.2
FAN10G3606 Fragaria x ananassa HOM05D004048 ORTHO05D004859 1.3e-122 443.7 324 68.2
Lsat_1_v5_gn_4_35260 Lactuca sativa HOM05D004048 ORTHO05D004859 1.3e-122 443.7 322 68.3
FvH4_7g15370 Fragaria vesca HOM05D004048 ORTHO05D004859 1.7e-122 443.4 324 68.2
Lj1g0027864 Lotus japonicus HOM05D004048 ORTHO05D004859 1.7e-122 443.4 327 67.3
Atru.chr7.1494 Acer truncatum HOM05D004048 ORTHO05D004859 2.2e-122 443.0 337 64.7
Carub.0005s2822 Capsella rubella HOM05D004048 ORTHO05D004859 2.2e-122 443.0 330 65.2
FAN06G1753 Fragaria x ananassa HOM05D004048 ORTHO05D004859 2.2e-122 443.0 324 68.2
Rhsim07G0205800 Rhododendron simsii HOM05D004048 ORTHO05D004859 2.2e-122 443.0 363 62.0
arahy.Tifrunner.gnm1.ann1.8BBS1S Arachis hypogaea HOM05D004048 ORTHO05D004859 3.8e-122 442.2 321 67.0
Lj5g0009706 Lotus japonicus HOM05D004048 ORTHO05D004859 6.5e-122 441.4 337 66.2
AUR62022619 Chenopodium quinoa HOM05D004048 ORTHO05D004859 1.1e-121 440.7 296 70.9
Psat4g156920 Pisum sativum HOM05D004048 ORTHO05D004859 2.5e-121 439.5 327 66.7
Medtr8g028555 Medicago truncatula HOM05D004048 ORTHO05D004859 7.2e-121 438.0 324 66.7
TPR.G28287 Trifolium pratense HOM05D004048 ORTHO05D004859 7.2e-121 438.0 327 66.4
TPR.G37181 Trifolium pratense HOM05D004048 ORTHO05D004859 1.2e-120 437.2 327 67.0
CBR_g45417 Chara braunii HOM05D004048 ORTHO05D004859 6.1e-120 434.9 308 69.5
Nitab4.5_0005222g0030 Nicotiana tabacum HOM05D004048 ORTHO05D004859 6.1e-120 434.9 340 64.7
FAN06G0189 Fragaria x ananassa HOM05D004048 ORTHO05D004859 1.8e-119 433.3 341 65.1
RcHm_v2.0_Chr1g0357711 Rosa chinensis HOM05D004048 ORTHO05D004859 2.3e-119 433.0 328 66.2
MELO3C014805.2 Cucumis melo HOM05D004048 ORTHO05D004859 6.8e-119 431.4 322 64.6
BcaC07g40671 Brassica carinata HOM05D004048 ORTHO05D004859 1.7e-117 426.8 345 62.9
Sopen09g002000 Solanum pennellii HOM05D004048 ORTHO05D004859 2.2e-117 426.4 296 69.6
MCO13G154 Micromonas commoda HOM05D004048 ORTHO05D004859 1.1e-116 424.1 327 64.2
Ca_03490_v3 Cicer arietinum L. HOM05D004048 ORTHO05D004859 1.4e-116 423.7 353 61.5
Cre12.g508550 Chlamydomonas reinhardtii HOM05D004048 ORTHO05D004859 2.7e-115 419.5 328 64.3
Rhsim07G0010400 Rhododendron simsii HOM05D004048 ORTHO05D004859 1.0e-114 417.5 327 64.2
unitig_60.g25627 Utricularia gibba HOM05D004048 ORTHO05D004859 1.3e-114 417.2 335 64.5
MELO3C012767.2 Cucumis melo HOM05D004048 ORTHO05D004859 2.8e-112 409.5 386 54.9
Ah.05g180160 Amaranthus hybridus HOM05D004048 ORTHO05D004859 5.2e-111 405.2 333 61.6
ClCG09G009090 Citrullus lanatus HOM05D004048 ORTHO05D004859 1.7e-109 400.2 322 61.2
Phvul.010G104900 Phaseolus vulgaris HOM05D004048 ORTHO05D004859 6.3e-109 398.3 288 67.7
FvH4_7g15371 Fragaria vesca HOM05D004048 ORTHO05D004859 1.6e-107 393.7 357 58.0
Rhsim07G0206900 Rhododendron simsii HOM05D004048 ORTHO05D004859 7.8e-107 391.3 377 55.2
Os01g0225500 Oryza sativa ssp. japonica HOM05D004048 ORTHO05D004859 1.3e-106 390.6 300 63.3
SEGI_21771 Sequoiadendron giganteum HOM05D004048 ORTHO05D004859 2.9e-106 389.4 238 81.5
CARHR107270 Cardamine hirsuta HOM05D004048 ORTHO05D004859 3.9e-106 389.0 324 61.7
SMO356G0035 Selaginella moellendorffii HOM05D004048 ORTHO05D004859 3.9e-106 389.0 300 63.3
SMO119G0299 Selaginella moellendorffii HOM05D004048 ORTHO05D004859 4.3e-105 385.6 273 67.8
Glyma.09G254700 Glycine max HOM05D004048 ORTHO05D004859 5.2e-103 378.6 300 63.7
PRCOL_00005166 Prasinoderma coloniale HOM05D004048 ORTHO05D004859 1.6e-99 367.1 322 58.4
ECA234G0147 Erigeron canadensis HOM05D004048 ORTHO05D004859 6.0e-99 365.2 292 65.1
Cpa.g.sc11.73 Carica papaya HOM05D004048 ORTHO05D004859 1.5e-97 360.5 343 56.9
GSVIVG01026967001 Vitis vinifera HOM05D004048 ORTHO05D004859 2.5e-97 359.8 268 66.0
Gohir.A08G133000 Gossypium hirsutum HOM05D004048 ORTHO05D004859 3.3e-97 359.4 263 67.7
ATR0751G082 Amborella trichopoda HOM05D004048 ORTHO05D004859 2.8e-96 356.3 246 71.1
Zm00001eb339000 Zea mays HOM05D004048 ORTHO05D004859 4.7e-96 355.5 241 73.4
FAN10G3616 Fragaria x ananassa HOM05D004048 ORTHO05D004859 1.5e-94 350.5 363 54.3
ATR0751G137 Amborella trichopoda HOM05D004048 ORTHO05D004859 1.0e-90 337.8 240 69.2
CDE11G0110 Ceratophyllum demersum HOM05D004048 ORTHO05D004859 2.3e-90 336.7 247 66.8
FAN06G4041 Fragaria x ananassa HOM05D004048 ORTHO05D004859 2.9e-85 319.7 272 61.0
Nn6g32447 Nelumbo nucifera HOM05D004048 ORTHO05D004859 1.4e-84 317.4 331 51.1
Medtr4g037305 Medicago truncatula HOM05D004048 ORTHO05D004859 2.4e-84 316.6 243 65.0
BcaC07g42671 Brassica carinata HOM05D004048 ORTHO05D004859 1.7e-82 310.5 335 51.0
FAN06G1997 Fragaria x ananassa HOM05D004048 ORTHO05D004859 7.3e-81 305.1 366 47.8
FAN10G1509 Fragaria x ananassa HOM05D004048 ORTHO05D004859 2.4e-76 290.0 244 63.1
Eucgr.B01984 Eucalyptus grandis HOM05D004048 ORTHO05D004859 1.2e-75 287.7 364 46.4
AL4G45340 Arabidopsis lyrata HOM05D004048 ORTHO05D004859 2.4e-68 263.5 192 67.2
Cfa001640 Carpinus fangiana HOM05D004048 ORTHO05D004859 1.7e-66 257.3 283 50.5
Medtr4g037245 Medicago truncatula HOM05D004048 ORTHO05D004859 1.5e-62 244.2 203 62.6
SEGI_25526 Sequoiadendron giganteum HOM05D004048 ORTHO05D004859 2.5e-57 226.9 161 70.2
Eucgr.B01986 Eucalyptus grandis HOM05D004048 ORTHO05D004859 6.2e-56 222.2 285 46.3
arahy.Tifrunner.gnm1.ann1.CIF5FW Arachis hypogaea HOM05D004048 ORTHO05D004859 3.8e-45 186.4 138 63.0
Haze_27487 Corylus avellana HOM05D004048 ORTHO05D004859 5.5e-44 182.6 233 39.9
Os01g0225400 Oryza sativa ssp. japonica HOM05D004048 ORTHO05D004859 3.0e-42 176.8 133 64.7
Haze_26957 Corylus avellana HOM05D005470 ORTHO05D006855 1.5e-41 174.5 207 45.9
PGSC0003DMG400018716 Solanum tuberosum HOM05D004048 ORTHO05D004859 3.3e-41 173.3 138 62.3
SHI16536 Sapria himalayana HOM05D004048 ORTHO05D004859 1.6e-40 171.0 134 61.2
TPR.G28294 Trifolium pratense HOM05D004048 ORTHO05D004859 1.1e-39 168.3 188 51.1
CAN.G439.28 Capsicum annuum HOM05D004048 ORTHO05D004859 8.2e-32 142.1 95 66.3
Cfa003872 Carpinus fangiana HOM05D004048 ORTHO05D004859 4.1e-31 139.8 339 33.3
MBI17_g16531_MAGBIO Magnolia biondii HOM05D004048 ORTHO05D004859 1.0e-29 135.2 103 58.3
Ca_03489_v3 Cicer arietinum L. HOM05D004048 ORTHO05D004859 1.0e-26 125.2 110 62.7
MBI12_g43904_MAGBIO Magnolia biondii HOM05D004048 ORTHO05D004859 3.0e-26 123.6 96 66.7
Medtr4g037275 Medicago truncatula HOM05D004048 ORTHO05D004859 3.3e-25 120.2 76 71.1
Actinidia20163 Actinidia chinensis HOM05D004048 ORTHO05D004859 4.1e-23 113.2 191 42.9
Lj6g0001313 Lotus japonicus HOM05D004048 ORTHO05D004859 1.6e-22 111.3 99 52.5
Medtr4g037315 Medicago truncatula HOM05D004048 ORTHO05D004859 1.6e-19 101.3 98 50.0
FAN01G2460 Fragaria x ananassa HOM05D004048 ORTHO05D004859 3.0e-18 97.1 91 52.7
SGA_v2.0_scaffold4G02383 Striga asiatica HOM05D004048 ORTHO05D051375 2.8e-16 90.5 73 67.1
FAN10G2371 Fragaria x ananassa HOM05D004048 ORTHO05D038698 6.3e-16 89.4 72 61.1
HanXRQChr15g0474641 Helianthus annuus HOM05D004048 ORTHO05D004859 2.4e-15 87.4 62 72.6
AL4G45350 Arabidopsis lyrata HOM05D004048 ORTHO05D038698 3.1e-15 87.0 66 59.1
ATR0751G274 Amborella trichopoda HOM05D004048 ORTHO05D004859 2.0e-14 84.3 72 54.2
arahy.Tifrunner.gnm1.ann1.63JPLQ Arachis hypogaea HOM05D004048 ORTHO05D004859 2.2e-13 80.9 81 45.7
DCAR_025216 Daucus carota HOM05D003118 ORTHO05D003618 1.5e-12 78.2 78 59.0
Potri.002G164601 Populus trichocarpa HOM05D004048 ORTHO05D004859 3.4e-09 67.0 81 40.7
arahy.Tifrunner.gnm1.ann1.DMYH1R Arachis hypogaea HOM05D004048 ORTHO05D004859 1.3e-08 65.1 74 40.5


User provided reference genes

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