Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c7_20600 Physcomitrium patens HOM05D005540 ORTHO05D006932 9.8e-175 616.7 310 100.0
Pp3c11_8570 Physcomitrium patens HOM05D005540 ORTHO05D006932 4.1e-149 531.6 305 85.9
ECA232G3523 Erigeron canadensis HOM05D005540 ORTHO05D006932 2.1e-121 439.5 305 71.8
CANSAT78G2033 Cannabis sativa HOM05D005540 ORTHO05D006932 6.2e-121 438.0 308 71.4
TAR629G0151 Trochodendron aralioides HOM05D005540 ORTHO05D006932 6.2e-121 438.0 309 69.9
Solyc02g091340.4 Solanum lycopersicum HOM05D005540 ORTHO05D006932 8.1e-121 437.6 303 72.3
Sopen02g035960 Solanum pennellii HOM05D005540 ORTHO05D006932 8.1e-121 437.6 303 72.3
Eucgr.F02818 Eucalyptus grandis HOM05D005540 ORTHO05D006932 1.1e-120 437.2 307 72.0
Dinv14871 Davidia involucrata HOM05D005540 ORTHO05D006932 1.4e-120 436.8 308 71.4
CSS0010845 Camellia sinensis var. sinensis HOM05D005540 ORTHO05D006932 3.1e-120 435.6 308 71.1
LjContig00141g0003223 Lotus japonicus HOM05D005540 ORTHO05D006932 3.1e-120 435.6 308 70.5
Atru.chr4.1672 Acer truncatum HOM05D005540 ORTHO05D006932 6.9e-120 434.5 308 71.1
Potri.017G129000 Populus trichocarpa HOM05D005540 ORTHO05D006932 2.0e-119 433.0 308 70.5
PSO017G2970 Papaver somniferum HOM05D005540 ORTHO05D006932 3.4e-119 432.2 309 69.6
SEGI_01535 Sequoiadendron giganteum HOM05D005540 ORTHO05D006932 3.4e-119 432.2 293 74.1
PGR004G0611 Punica granatum HOM05D005540 ORTHO05D006932 7.6e-119 431.0 305 70.8
BcaC02g09619 Brassica carinata HOM05D005540 ORTHO05D006932 9.9e-119 430.6 308 70.1
Medtr5g079730 Medicago truncatula HOM05D005540 ORTHO05D006932 9.9e-119 430.6 308 69.5
Psat2g040920 Pisum sativum HOM05D005540 ORTHO05D006932 9.9e-119 430.6 308 69.8
TPR.G3482 Trifolium pratense HOM05D005540 ORTHO05D006932 9.9e-119 430.6 308 69.8
C04p44790 Brassica napus HOM05D005540 ORTHO05D006932 1.7e-118 429.9 308 70.1
Manes.07G054300 Manihot esculenta HOM05D005540 ORTHO05D006932 2.2e-118 429.5 307 70.0
Sed0009967 Sechium edule HOM05D005540 ORTHO05D006932 2.2e-118 429.5 308 69.2
Aqoxy3G00138 Aquilegia oxysepala HOM05D005540 ORTHO05D006932 3.8e-118 428.7 308 70.1
BcaB06g27151 Brassica carinata HOM05D005540 ORTHO05D006932 3.8e-118 428.7 308 69.8
Ciclev10012086m.g Citrus clementina HOM05D005540 ORTHO05D006932 3.8e-118 428.7 308 71.1
BraA04t16769Z Brassica rapa HOM05D005540 ORTHO05D006932 4.9e-118 428.3 308 69.8
CiPaw.03G067900 Carya illinoinensis HOM05D005540 ORTHO05D006932 4.9e-118 428.3 308 70.8
THA.LOC104822414 Tarenaya hassleriana HOM05D005540 ORTHO05D006932 4.9e-118 428.3 303 71.9
Ca_05867_v3 Cicer arietinum L. HOM05D005540 ORTHO05D006932 6.4e-118 427.9 308 69.2
Mapoly0043s0025 Marchantia polymorpha HOM05D005540 ORTHO05D006932 1.1e-117 427.2 312 69.2
Nitab4.5_0004399g0070 Nicotiana tabacum HOM05D005540 ORTHO05D006932 1.1e-117 427.2 328 67.4
Phvul.001G232200 Phaseolus vulgaris HOM05D005540 ORTHO05D006932 1.4e-117 426.8 308 70.1
Thhalv10027854m.g Eutrema salsugineum HOM05D005540 ORTHO05D006932 1.9e-117 426.4 300 71.3
BolC4t26053H Brassica oleracea HOM05D005540 ORTHO05D006932 2.4e-117 426.0 309 69.9
Lalb_Chr18g0053271 Lupinus albus HOM05D005540 ORTHO05D006932 2.4e-117 426.0 307 70.0
TWI77G0639 Tripterygium wilfordii HOM05D005540 ORTHO05D006932 2.4e-117 426.0 307 68.1
CsaV3_3G021680 Cucumis sativus L. HOM05D005540 ORTHO05D006932 5.5e-117 424.9 308 69.2
MSTRG.23613 Avicennia marina HOM05D005540 ORTHO05D006932 9.3e-117 424.1 308 69.2
COL.COLO4_15705 Corchorus olitorius HOM05D005540 ORTHO05D006932 9.3e-117 424.1 308 69.5
A04p11070 Brassica napus HOM05D005540 ORTHO05D006932 1.2e-116 423.7 309 69.6
RcHm_v2.0_Chr2g0122561 Rosa chinensis HOM05D005540 ORTHO05D006932 1.2e-116 423.7 317 67.5
Sp7g04170 Schrenkiella parvula HOM05D005540 ORTHO05D006932 1.2e-116 423.7 308 69.2
Actinidia39198 Actinidia chinensis HOM05D005540 ORTHO05D006932 1.6e-116 423.3 302 70.5
Carub.0007s3304 Capsella rubella HOM05D005540 ORTHO05D006932 1.6e-116 423.3 300 70.3
CARHR214890 Cardamine hirsuta HOM05D005540 ORTHO05D006932 1.6e-116 423.3 300 70.7
GSVIVG01030869001 Vitis vinifera HOM05D005540 ORTHO05D006932 2.1e-116 422.9 308 69.5
Sed0014193 Sechium edule HOM05D005540 ORTHO05D006932 2.7e-116 422.5 307 68.4
Cfa007847 Carpinus fangiana HOM05D005540 ORTHO05D006932 3.5e-116 422.2 307 68.7
Glyma.18G038600 Glycine max HOM05D005540 ORTHO05D006932 4.6e-116 421.8 308 69.2
AT5G37850 Arabidopsis thaliana HOM05D005540 ORTHO05D006932 6.0e-116 421.4 300 70.7
Duzib138G0816 Durio zibethinus HOM05D005540 ORTHO05D006932 6.0e-116 421.4 305 69.8
Glyma.11G218700 Glycine max HOM05D005540 ORTHO05D006932 1.8e-115 419.9 308 68.5
VMungo1383G3344 Vigna mungo HOM05D005540 ORTHO05D006932 2.3e-115 419.5 308 68.5
vmacro18057 Vaccinium macrocarpon HOM05D005540 ORTHO05D006932 5.1e-115 418.3 318 67.6
ClCG05G010900 Citrullus lanatus HOM05D005540 ORTHO05D006932 6.7e-115 417.9 318 67.0
CAN.G625.83 Capsicum annuum HOM05D005540 ORTHO05D006932 8.7e-115 417.5 300 70.7
Migut.H00866 Erythranthe guttata HOM05D005540 ORTHO05D006932 8.7e-115 417.5 308 68.5
Aa31LG9G17310 Aethionema arabicum HOM05D005540 ORTHO05D006932 1.1e-114 417.2 303 67.3
Os12g0600400 Oryza sativa ssp. japonica HOM05D005540 ORTHO05D006932 1.5e-114 416.8 303 68.6
ATR0686G023 Amborella trichopoda HOM05D005540 ORTHO05D006932 1.9e-114 416.4 310 68.4
Gohir.D11G168100 Gossypium hirsutum HOM05D005540 ORTHO05D006932 2.5e-114 416.0 305 68.5
Gorai.007G179400 Gossypium raimondii HOM05D005540 ORTHO05D006932 2.5e-114 416.0 305 68.5
AL7G46750 Arabidopsis lyrata HOM05D005540 ORTHO05D006932 3.3e-114 415.6 300 70.0
Zm00001eb135500 Zea mays HOM05D005540 ORTHO05D006932 7.4e-114 414.5 303 68.6
Gohir.A11G161800 Gossypium hirsutum HOM05D005540 ORTHO05D006932 1.6e-113 413.3 305 68.5
Thecc.04G122100 Theobroma cacao HOM05D005540 ORTHO05D006932 2.1e-113 412.9 308 67.9
Cc07_g08210 Coffea canephora HOM05D005540 ORTHO05D006932 1.5e-111 406.8 313 67.4
Lj4A178T43 Lonicera japonica HOM05D005540 ORTHO05D006932 1.5e-111 406.8 339 64.9
Prupe.3G158100 Prunus persica HOM05D005540 ORTHO05D006932 7.6e-111 404.4 307 68.1
arahy.Tifrunner.gnm1.ann1.A8AWVV Arachis hypogaea HOM05D005540 ORTHO05D006932 5.5e-109 398.3 307 66.1
FAN28G0493 Fragaria x ananassa HOM05D005540 ORTHO05D006932 5.5e-109 398.3 369 58.3
arahy.Tifrunner.gnm1.ann1.IJ36EI Arachis hypogaea HOM05D005540 ORTHO05D006932 7.1e-109 397.9 307 66.4
HPP92_024102 Vanilla planifolia HOM05D005540 ORTHO05D006932 7.1e-109 397.9 351 59.3
Dinv19006 Davidia involucrata HOM05D005540 ORTHO05D006932 1.3e-107 393.7 266 74.1
PSO478G5258 Papaver somniferum HOM05D005540 ORTHO05D006932 3.9e-107 392.1 258 74.0
SMO117G0213 Selaginella moellendorffii HOM05D005540 ORTHO05D006932 3.9e-107 392.1 294 66.7
unitig_0.g2608 Utricularia gibba HOM05D005540 ORTHO05D006932 4.3e-106 388.7 310 65.2
AagrBONN_evm.TU.Sc2ySwM_344.3276 Anthoceros agrestis HOM05D005540 ORTHO05D006932 3.1e-104 382.5 262 71.4
Nitab4.5_0002248g0040 Nicotiana tabacum HOM05D005540 ORTHO05D006932 5.3e-104 381.7 326 62.9
EL10Ac2g04488 Beta vulgaris HOM05D005540 ORTHO05D006932 2.0e-103 379.8 308 65.3
Lsat_1_v5_gn_4_154720 Lactuca sativa HOM05D005540 ORTHO05D006932 2.2e-102 376.3 340 59.4
arahy.Tifrunner.gnm1.ann1.32A9M8 Arachis hypogaea HOM05D005540 ORTHO05D006932 3.2e-101 372.5 289 66.4
Sabra17G0107500 Salix brachista HOM05D005540 ORTHO05D006932 1.2e-100 370.5 331 59.8
CDE04G3097 Ceratophyllum demersum HOM05D005540 ORTHO05D006932 4.6e-100 368.6 305 62.3
Peaxi162Scf00803g00528 Petunia axillaris HOM05D005540 ORTHO05D006932 2.3e-99 366.3 311 63.0
Duzib133G1255 Durio zibethinus HOM05D005540 ORTHO05D006932 3.3e-98 362.5 305 62.0
Sed0021451 Sechium edule HOM05D005540 ORTHO05D006932 2.8e-97 359.4 306 59.2
FAN23G2620 Fragaria x ananassa HOM05D005540 ORTHO05D006932 2.4e-96 356.3 315 60.6
MD12G1075700 Malus domestica HOM05D005540 ORTHO05D006932 3.1e-96 355.9 322 59.3
CDE06G0494 Ceratophyllum demersum HOM05D005540 ORTHO05D006932 2.0e-95 353.2 261 68.6
Lsat_1_v5_gn_0_4201 Lactuca sativa HOM05D005540 ORTHO05D006932 2.6e-95 352.8 265 69.4
Atru.BG.179.p Acer truncatum HOM05D005540 ORTHO05D006932 1.3e-94 350.5 307 61.6
Rhsim08G0085100 Rhododendron simsii HOM05D005540 ORTHO05D006932 2.5e-93 346.3 498 43.8
QL11p004195 Quercus lobata HOM05D005540 ORTHO05D006932 3.2e-93 345.9 418 47.8
Sc14g0004860 Simmondsia chinensis HOM05D005540 ORTHO05D006932 2.3e-91 339.7 230 72.6
FvH4_1g24900 Fragaria vesca HOM05D005540 ORTHO05D006932 3.9e-91 339.0 243 69.5
MCO05G093 Micromonas commoda HOM05D005540 ORTHO05D006932 7.4e-90 334.7 298 58.1
SGA_v2.0_scaffold49G18144 Striga asiatica HOM05D005540 ORTHO05D006932 5.3e-88 328.6 250 64.8
Ah.10g037980 Amaranthus hybridus HOM05D005540 ORTHO05D006932 1.4e-83 313.9 305 56.4
Hma1.2p1_0283F.1_g113550 Hydrangea macrophylla HOM05D005540 ORTHO05D006932 2.2e-81 306.6 302 56.3
SalBow3G0445 Salvia bowleyana HOM05D005540 ORTHO05D006932 3.1e-80 302.8 253 60.9
Sed0017329 Sechium edule HOM05D005540 ORTHO05D006932 4.1e-80 302.4 228 63.6
HPP92_024131 Vanilla planifolia HOM05D005540 ORTHO05D006932 9.1e-80 301.2 207 71.5
DCAR_025877 Daucus carota HOM05D005540 ORTHO05D006932 2.0e-79 300.1 217 67.7
MBI16_g05922_MAGBIO Magnolia biondii HOM05D005540 ORTHO05D006932 1.7e-78 297.0 239 62.8
Cre03.g173800 Chlamydomonas reinhardtii HOM05D005540 ORTHO05D006932 2.0e-74 283.5 302 52.3
Nn4g24119 Nelumbo nucifera HOM05D005540 ORTHO05D006932 5.9e-71 271.9 308 50.0
AUR62023244 Chenopodium quinoa HOM05D005540 ORTHO05D006932 2.3e-67 260.0 265 54.3
CBR_g12736 Chara braunii HOM05D005540 ORTHO05D006932 8.8e-67 258.1 179 70.9
Hund16203 Selenicereus undatus HOM05D005540 ORTHO05D006932 3.7e-57 226.1 179 67.0
Oeu030810.1 Olea europaea HOM05D005540 ORTHO05D006932 1.6e-55 220.7 157 70.7
Cpa.g.sc116.26 Carica papaya HOM05D005540 ORTHO05D006932 2.1e-52 210.3 119 84.0
Haze_14219 Corylus avellana HOM05D005540 ORTHO05D006932 6.1e-52 208.8 195 60.0
SGA_v2.0_scaffold6G03270 Striga asiatica HOM05D005540 ORTHO05D006932 8.0e-52 208.4 175 60.6
Nn3g18203 Nelumbo nucifera HOM05D005540 ORTHO05D006932 5.4e-48 195.7 121 79.3
Migut.H00263 Erythranthe guttata HOM05D005540 ORTHO05D006932 2.1e-44 183.7 156 60.3
PRCOL_00006483 Prasinoderma coloniale HOM05D005540 ORTHO05D006932 6.8e-43 178.7 273 37.4
FAN26G0473 Fragaria x ananassa HOM05D005540 ORTHO05D006932 2.9e-41 173.3 488 28.9
SHI09520 Sapria himalayana HOM05D005540 ORTHO05D006932 2.9e-41 173.3 113 74.3
Cpa.g.sc116.24 Carica papaya HOM05D005540 ORTHO05D006932 5.4e-40 169.1 141 61.0
Haze_26639 Corylus avellana HOM05D005540 ORTHO05D006932 2.2e-33 147.1 291 34.4
Hund16202 Selenicereus undatus HOM05D005540 ORTHO05D006932 2.4e-32 143.7 232 41.8
Cfa022314 Carpinus fangiana HOM05D005540 ORTHO05D006932 5.4e-32 142.5 325 31.4
Atru.chr4.2426 Acer truncatum HOM05D005540 ORTHO05D006932 1.4e-24 117.9 66 81.8
Nn3g18202 Nelumbo nucifera HOM05D005540 ORTHO05D006932 6.0e-23 112.5 97 54.6
MELO3C031731.2 Cucumis melo HOM05D005540 ORTHO05D006932 8.1e-20 102.1 63 77.8
MELO3C020384.2 Cucumis melo HOM05D005540 ORTHO05D006932 2.6e-18 97.1 70 65.7
SalBow3G4194 Salvia bowleyana HOM05D005540 ORTHO05D006932 1.3e-17 94.7 59 79.7
FAN26G3341 Fragaria x ananassa HOM05D005540 ORTHO05D006932 1.7e-17 94.4 59 78.0
AUR62023196 Chenopodium quinoa HOM05D005540 ORTHO05D006932 3.8e-17 93.2 64 70.3
Hma1.2p1_0179F.1_g079120 Hydrangea macrophylla HOM05D005540 ORTHO05D006932 1.3e-14 84.7 58 74.1
SEGI_04261 Sequoiadendron giganteum HOM05D005540 ORTHO05D006932 8.1e-12 75.5 62 66.1
SHI09525 Sapria himalayana HOM05D005540 ORTHO05D006932 4.0e-11 73.2 61 65.6
Hma1.2p1_0179F.1_g079130 Hydrangea macrophylla HOM05D005540 ORTHO05D006932 8.4e-09 65.5 32 84.4
arahy.Tifrunner.gnm1.ann1.XYVL4V Arachis hypogaea HOM05D005540 ORTHO05D023714 3.2e-08 63.5 43 69.8
PGR042G3208 Punica granatum HOM05D005536 ORTHO05D006999 1.6e-07 61.2 109 35.8
SHI09501 Sapria himalayana HOM05D005540 ORTHO05D006932 6.7e-06 55.8 55 52.7
Potri.003G015700 Populus trichocarpa HOM05D005536 ORTHO05D006999 8.7e-06 55.5 160 30.0


User provided reference genes

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