Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c7_13070 Physcomitrium patens HOM05D003823 ORTHO05D004866 4.9e-97 357.8 185 100.0
Pp3c11_12990 Physcomitrium patens HOM05D003823 ORTHO05D004866 3.9e-94 348.2 185 92.4
Mapoly0081s0078 Marchantia polymorpha HOM05D003823 ORTHO05D004866 1.6e-92 342.8 184 89.1
Os02g0265400 Oryza sativa ssp. japonica HOM05D003823 ORTHO05D004866 4.4e-90 334.7 182 87.4
PSO017G2864 Papaver somniferum HOM05D003823 ORTHO05D004866 9.9e-90 333.6 182 86.8
ATR0564G299 Amborella trichopoda HOM05D003823 ORTHO05D004866 1.7e-89 332.8 182 86.8
PSO478G3470 Papaver somniferum HOM05D003823 ORTHO05D004866 2.9e-89 332.0 182 86.3
MBI02_g36598_MAGBIO Magnolia biondii HOM05D003823 ORTHO05D004866 4.9e-89 331.3 182 86.3
Zm00001eb203950 Zea mays HOM05D003823 ORTHO05D004866 4.9e-89 331.3 182 86.8
Aqoxy3G03322 Aquilegia oxysepala HOM05D003823 ORTHO05D004866 6.4e-89 330.9 182 86.8
Medtr3g080480 Medicago truncatula HOM05D003823 ORTHO05D004866 8.4e-89 330.5 182 85.7
TAR622G1107 Trochodendron aralioides HOM05D003823 ORTHO05D004866 1.1e-88 330.1 182 85.7
CANSAT80G0583 Cannabis sativa HOM05D003823 ORTHO05D004866 1.9e-88 329.3 182 85.2
CiPaw.11G041500 Carya illinoinensis HOM05D003823 ORTHO05D004866 1.9e-88 329.3 182 85.2
Lalb_Chr25g0280071 Lupinus albus HOM05D003823 ORTHO05D004866 1.9e-88 329.3 182 85.2
TAR374G1522 Trochodendron aralioides HOM05D003823 ORTHO05D004866 1.9e-88 329.3 182 85.7
COL.COLO4_22965 Corchorus olitorius HOM05D003823 ORTHO05D004866 3.2e-88 328.6 182 85.2
PGSC0003DMG400018144 Solanum tuberosum HOM05D003823 ORTHO05D004866 3.2e-88 328.6 182 85.7
Glyma.02G268600 Glycine max HOM05D003823 ORTHO05D004866 4.1e-88 328.2 182 84.6
Gohir.A11G029891 Gossypium hirsutum HOM05D003823 ORTHO05D004866 4.1e-88 328.2 182 85.7
Manes.05G098825 Manihot esculenta HOM05D003823 ORTHO05D004866 4.1e-88 328.2 182 85.2
Cpa.g.sc388.5 Carica papaya HOM05D003823 ORTHO05D004866 5.4e-88 327.8 182 84.6
AUR62027457 Chenopodium quinoa HOM05D003823 ORTHO05D004866 5.4e-88 327.8 182 84.6
AUR62031242 Chenopodium quinoa HOM05D003823 ORTHO05D004866 5.4e-88 327.8 182 84.6
Nn8g40950 Nelumbo nucifera HOM05D003823 ORTHO05D004866 5.4e-88 327.8 183 85.8
VMungo0647G1166 Vigna mungo HOM05D003823 ORTHO05D004866 5.4e-88 327.8 182 84.1
Ca_16285_v3 Cicer arietinum L. HOM05D003823 ORTHO05D004866 7.1e-88 327.4 182 84.1
Cc04_g17180 Coffea canephora HOM05D003823 ORTHO05D004866 7.1e-88 327.4 182 85.2
Manes.14G076100 Manihot esculenta HOM05D003823 ORTHO05D004866 7.1e-88 327.4 182 85.2
Peaxi162Scf00009g00217 Petunia axillaris HOM05D003823 ORTHO05D004866 7.1e-88 327.4 182 85.2
Phvul.008G213700 Phaseolus vulgaris HOM05D003823 ORTHO05D004866 7.1e-88 327.4 182 83.5
Solyc03g113020.3 Solanum lycopersicum HOM05D003823 ORTHO05D004866 7.1e-88 327.4 182 85.7
Sopen03g032100 Solanum pennellii HOM05D003823 ORTHO05D004866 7.1e-88 327.4 182 85.7
GSVIVG01020043001 Vitis vinifera HOM05D003823 ORTHO05D004866 7.1e-88 327.4 182 85.2
HanXRQChr02g0056361 Helianthus annuus HOM05D003823 ORTHO05D004866 9.2e-88 327.0 182 85.2
MD06G1190100 Malus domestica HOM05D003823 ORTHO05D004866 9.2e-88 327.0 182 84.6
MD14G1197000 Malus domestica HOM05D003823 ORTHO05D004866 9.2e-88 327.0 182 84.6
QL10p016165 Quercus lobata HOM05D003823 ORTHO05D004866 9.2e-88 327.0 182 84.6
Cc07_g03190 Coffea canephora HOM05D003823 ORTHO05D004866 1.2e-87 326.6 182 84.6
Psat5g111480 Pisum sativum HOM05D003823 ORTHO05D004866 1.2e-87 326.6 182 84.1
Potri.001G354000 Populus trichocarpa HOM05D003823 ORTHO05D004866 1.2e-87 326.6 182 85.7
PGR083G1126 Punica granatum HOM05D003823 ORTHO05D004866 1.2e-87 326.6 182 84.6
vmacro18202 Vaccinium macrocarpon HOM05D003823 ORTHO05D004866 1.2e-87 326.6 182 85.2
ClCG06G016300 Citrullus lanatus HOM05D003823 ORTHO05D004866 1.6e-87 326.2 182 84.1
MELO3C017163.2 Cucumis melo HOM05D003823 ORTHO05D004866 1.6e-87 326.2 182 84.1
CsaV3_1G002230 Cucumis sativus L. HOM05D003823 ORTHO05D004866 1.6e-87 326.2 182 84.1
FvH4_5g15250 Fragaria vesca HOM05D003823 ORTHO05D004866 1.6e-87 326.2 182 84.6
FAN04G0558 Fragaria x ananassa HOM05D003823 ORTHO05D004866 1.6e-87 326.2 182 84.6
FAN08G0194 Fragaria x ananassa HOM05D003823 ORTHO05D004866 1.6e-87 326.2 182 84.6
FAN13G2005 Fragaria x ananassa HOM05D003823 ORTHO05D004866 1.6e-87 326.2 182 84.6
FAN18G4237 Fragaria x ananassa HOM05D003823 ORTHO05D004866 1.6e-87 326.2 182 84.6
HanXRQChr14g0449901 Helianthus annuus HOM05D003823 ORTHO05D004866 1.6e-87 326.2 182 84.1
Lsat_1_v5_gn_2_88881 Lactuca sativa HOM05D003823 ORTHO05D004866 1.6e-87 326.2 182 85.2
RcHm_v2.0_Chr7g0180841 Rosa chinensis HOM05D003823 ORTHO05D004866 1.6e-87 326.2 182 84.6
Sed0017565 Sechium edule HOM05D003823 ORTHO05D004866 1.6e-87 326.2 182 84.1
SMO116G0153 Selaginella moellendorffii HOM05D003823 ORTHO05D004866 1.6e-87 326.2 183 84.7
Atru.chr11.1839 Acer truncatum HOM05D003823 ORTHO05D004866 2.1e-87 325.9 182 85.2
CDE02G3183 Ceratophyllum demersum HOM05D003823 ORTHO05D004866 2.1e-87 325.9 182 85.2
Ciclev10022411m.g Citrus clementina HOM05D003823 ORTHO05D004866 2.1e-87 325.9 182 84.6
Dinv38684 Davidia involucrata HOM05D003823 ORTHO05D004866 2.1e-87 325.9 182 84.6
Duzib268G0082 Durio zibethinus HOM05D003823 ORTHO05D004866 2.1e-87 325.9 182 84.1
Gohir.D11G033300 Gossypium hirsutum HOM05D003823 ORTHO05D004866 2.1e-87 325.9 182 85.2
Gorai.007G036100 Gossypium raimondii HOM05D003823 ORTHO05D004866 2.1e-87 325.9 182 85.2
Sc12g0006240 Simmondsia chinensis HOM05D003823 ORTHO05D004866 2.1e-87 325.9 182 84.1
TPR.G25673 Trifolium pratense HOM05D003823 ORTHO05D004866 2.1e-87 325.9 182 84.1
Dinv06526 Davidia involucrata HOM05D003823 ORTHO05D004866 2.7e-87 325.5 182 84.1
ECA238G0538 Erigeron canadensis HOM05D003823 ORTHO05D004866 2.7e-87 325.5 182 84.1
Nn4g23085 Nelumbo nucifera HOM05D003823 ORTHO05D004866 2.7e-87 325.5 183 85.2
Hund02662 Selenicereus undatus HOM05D003823 ORTHO05D004866 2.7e-87 325.5 182 83.5
TWI60G1055 Tripterygium wilfordii HOM05D003823 ORTHO05D004866 2.7e-87 325.5 182 84.6
TWI81G0804 Tripterygium wilfordii HOM05D003823 ORTHO05D004866 2.7e-87 325.5 182 84.6
CAN.G1305.7 Capsicum annuum HOM05D003823 ORTHO05D004866 3.5e-87 325.1 182 85.2
Cfa018968 Carpinus fangiana HOM05D000046 ORTHO05D004866 3.5e-87 325.1 182 84.1
Duzib251G0021 Durio zibethinus HOM05D003823 ORTHO05D004866 3.5e-87 325.1 182 84.6
Glyma.14G048800 Glycine max HOM05D003823 ORTHO05D004866 3.5e-87 325.1 182 84.1
Nitab4.5_0000785g0070 Nicotiana tabacum HOM05D003823 ORTHO05D004866 3.5e-87 325.1 182 84.6
Nitab4.5_0010010g0030 Nicotiana tabacum HOM05D003823 ORTHO05D004866 3.5e-87 325.1 182 84.6
Potri.011G077900 Populus trichocarpa HOM05D003823 ORTHO05D004866 3.5e-87 325.1 182 85.2
SalBow6G5762 Salvia bowleyana HOM05D003823 ORTHO05D004866 3.5e-87 325.1 182 84.1
CSS0031728 Camellia sinensis var. sinensis HOM05D003823 ORTHO05D004866 4.6e-87 324.7 182 84.1
CSS0041610 Camellia sinensis var. sinensis HOM05D003823 ORTHO05D004866 4.6e-87 324.7 182 84.1
CSS0049183 Camellia sinensis var. sinensis HOM05D003823 ORTHO05D004866 4.6e-87 324.7 182 84.1
Ciclev10032832m.g Citrus clementina HOM05D003823 ORTHO05D004866 4.6e-87 324.7 182 84.1
Prupe.5G189200 Prunus persica HOM05D003823 ORTHO05D004866 4.6e-87 324.7 182 84.1
Actinidia02709 Actinidia chinensis HOM05D003823 ORTHO05D004866 6.0e-87 324.3 182 84.6
Psat2g025840 Pisum sativum HOM05D003823 ORTHO05D004866 6.0e-87 324.3 182 83.5
Thecc.03G082400 Theobroma cacao HOM05D003823 ORTHO05D004866 6.0e-87 324.3 182 85.2
Ca_06062_v3 Cicer arietinum L. HOM05D003823 ORTHO05D004866 7.8e-87 323.9 182 84.1
Ca_30714_v3 Cicer arietinum L. HOM05D003823 ORTHO05D004866 7.8e-87 323.9 182 84.1
Gohir.A12G166100 Gossypium hirsutum HOM05D003823 ORTHO05D004866 7.8e-87 323.9 182 83.5
Gohir.D12G169500 Gossypium hirsutum HOM05D003823 ORTHO05D004866 7.8e-87 323.9 182 83.5
Thecc.02G351700 Theobroma cacao HOM05D003823 ORTHO05D004866 7.8e-87 323.9 182 83.0
TPR.G29042 Trifolium pratense HOM05D003823 ORTHO05D004866 1.0e-86 323.6 182 83.5
Duzib084G0821 Durio zibethinus HOM05D003823 ORTHO05D004866 1.3e-86 323.2 182 84.1
Medtr5g085380 Medicago truncatula HOM05D003823 ORTHO05D004866 1.3e-86 323.2 182 83.0
Migut.D02333 Erythranthe guttata HOM05D003823 ORTHO05D004866 2.3e-86 322.4 182 83.5
Oeu022626.1 Olea europaea HOM05D003823 ORTHO05D004866 2.3e-86 322.4 182 83.0
Zm00001eb237810 Zea mays HOM05D003823 ORTHO05D004866 2.3e-86 322.4 182 84.6
Sabra16G0232900 Salix brachista HOM05D003823 ORTHO05D004866 3.0e-86 322.0 182 84.1
EL10Ac8g19266 Beta vulgaris HOM05D003823 ORTHO05D004866 3.9e-86 321.6 182 82.4
Lj4g0027914 Lotus japonicus HOM05D003823 ORTHO05D004866 3.9e-86 321.6 182 83.5
Gorai.008G182100 Gossypium raimondii HOM05D003823 ORTHO05D004866 8.6e-86 320.5 182 82.4
Atru.chr4.927 Acer truncatum HOM05D003823 ORTHO05D004866 1.1e-85 320.1 182 83.5
MSTRG.9636 Avicennia marina HOM05D003823 ORTHO05D004866 1.1e-85 320.1 182 82.4
BcaC01g01774 Brassica carinata HOM05D003823 ORTHO05D004866 1.5e-85 319.7 182 82.4
C03p72020 Brassica napus HOM05D003823 ORTHO05D004866 1.5e-85 319.7 182 82.4
BolC3t19499H Brassica oleracea HOM05D003823 ORTHO05D004866 1.5e-85 319.7 182 82.4
Dinv19933 Davidia involucrata HOM05D003823 ORTHO05D004866 1.5e-85 319.7 182 83.0
Migut.D02334 Erythranthe guttata HOM05D003823 ORTHO05D004866 1.5e-85 319.7 182 83.5
BcaB01g00874 Brassica carinata HOM05D003823 ORTHO05D004866 1.9e-85 319.3 182 81.9
Sed0002791 Sechium edule HOM05D003823 ORTHO05D004866 2.5e-85 318.9 182 82.4
HPP92_020326 Vanilla planifolia HOM05D003823 ORTHO05D004866 2.5e-85 318.9 190 80.5
Actinidia37644 Actinidia chinensis HOM05D003823 ORTHO05D004866 3.3e-85 318.5 182 82.4
A06p19840 Brassica napus HOM05D003823 ORTHO05D004866 3.3e-85 318.5 182 81.9
BraA06t25064Z Brassica rapa HOM05D003823 ORTHO05D004866 3.3e-85 318.5 182 81.9
A06p27290 Brassica napus HOM05D003823 ORTHO05D004866 4.3e-85 318.2 182 81.3
BraA06t25670Z Brassica rapa HOM05D003823 ORTHO05D004866 4.3e-85 318.2 182 81.3
THA.LOC104819434 Tarenaya hassleriana HOM05D003823 ORTHO05D004866 4.3e-85 318.2 182 81.9
Rhsim08G0068000 Rhododendron simsii HOM05D003823 ORTHO05D004866 5.6e-85 317.8 194 79.9
Eucgr.K02462 Eucalyptus grandis HOM05D003823 ORTHO05D004866 7.3e-85 317.4 202 76.7
Sp5g14150 Schrenkiella parvula HOM05D003823 ORTHO05D004866 7.3e-85 317.4 182 81.3
BcaC01g02292 Brassica carinata HOM05D003823 ORTHO05D004866 1.6e-84 316.2 182 81.3
C03p66970 Brassica napus HOM05D003823 ORTHO05D004866 1.6e-84 316.2 182 81.3
BolC3t18970H Brassica oleracea HOM05D003823 ORTHO05D004866 1.6e-84 316.2 182 81.3
Rhsim08G0157700 Rhododendron simsii HOM05D003823 ORTHO05D004866 1.6e-84 316.2 182 81.9
Aa31LG4G16460 Aethionema arabicum HOM05D003823 ORTHO05D004866 2.1e-84 315.8 182 81.3
CARHR156490 Cardamine hirsuta HOM05D003823 ORTHO05D004866 2.1e-84 315.8 182 80.2
Thhalv10010746m.g Eutrema salsugineum HOM05D003823 ORTHO05D004866 2.1e-84 315.8 182 80.8
Oeu006179.1 Olea europaea HOM05D003823 ORTHO05D004866 2.1e-84 315.8 182 81.9
CBR_g29439 Chara braunii HOM05D003823 ORTHO05D004866 2.8e-84 315.5 182 80.8
THA.LOC104821437 Tarenaya hassleriana HOM05D003823 ORTHO05D004866 1.1e-83 313.5 182 81.3
AL5G27100 Arabidopsis lyrata HOM05D003823 ORTHO05D004866 1.4e-83 313.2 183 79.2
AT3G47810 Arabidopsis thaliana HOM05D003823 ORTHO05D004866 1.4e-83 313.2 183 79.2
BcaB02g10689 Brassica carinata HOM05D003823 ORTHO05D004866 1.4e-83 313.2 182 80.2
DCAR_026066 Daucus carota HOM05D003823 ORTHO05D004866 2.4e-83 312.4 182 81.3
Lj5A113G71 Lonicera japonica HOM05D003823 ORTHO05D004866 5.2e-83 311.2 182 80.8
Carub.0005s1392 Capsella rubella HOM05D003823 ORTHO05D004866 2.0e-82 309.3 183 78.7
Haze_07352 Corylus avellana HOM05D003823 ORTHO05D004866 2.3e-78 295.8 248 61.7
CSS0031561 Camellia sinensis var. sinensis HOM05D003823 ORTHO05D004866 3.0e-78 295.4 183 79.8
SGA_v2.0_scaffold193G40709 Striga asiatica HOM05D003823 ORTHO05D004866 1.8e-75 286.2 191 71.7
GSVIVG01008037001 Vitis vinifera HOM05D003823 ORTHO05D004866 2.6e-74 282.3 157 83.4
MBI05_g00394_MAGBIO Magnolia biondii HOM05D000046 ORTHO05D000195 1.6e-71 273.1 139 89.9
CDE09G0968 Ceratophyllum demersum HOM05D005655 ORTHO05D007386 4.6e-71 271.6 152 83.6
SEGI_34945 Sequoiadendron giganteum HOM05D003823 ORTHO05D004866 2.3e-70 269.2 136 91.9
QL93p0043_0002 Quercus lobata HOM05D003823 ORTHO05D004866 3.0e-70 268.9 138 89.1
CSS0019545 Camellia sinensis var. sinensis HOM05D003823 ORTHO05D004866 7.4e-69 264.2 182 72.0
Nitab4.5_0012727g0030 Nicotiana tabacum HOM05D003823 ORTHO05D004866 2.8e-68 262.3 138 87.0
Eucgr.G00164 Eucalyptus grandis HOM05D003823 ORTHO05D004866 1.0e-62 243.8 136 81.6
TAR729G0007 Trochodendron aralioides HOM05D003823 ORTHO05D004866 1.1e-61 240.4 160 73.8
Eucgr.G00114 Eucalyptus grandis HOM05D003823 ORTHO05D004866 2.8e-60 235.7 144 77.8
Actinidia17538 Actinidia chinensis HOM05D003823 ORTHO05D004866 3.4e-58 228.8 130 81.5
Manes.01G188500 Manihot esculenta HOM05D003823 ORTHO05D004866 4.2e-56 221.9 128 79.7
Lj4A511G17 Lonicera japonica HOM05D003823 ORTHO05D004866 1.2e-55 220.3 182 64.8
CSS0004961 Camellia sinensis var. sinensis HOM05D003823 ORTHO05D004866 6.0e-55 218.0 183 63.4
Cre12.g499900 Chlamydomonas reinhardtii HOM05D003823 ORTHO05D004866 1.5e-50 203.4 187 51.3
MCO13G641 Micromonas commoda HOM05D003823 ORTHO05D004866 5.9e-50 201.4 188 50.0
Lj4A501G12 Lonicera japonica HOM05D003823 ORTHO05D004866 1.5e-45 186.8 166 60.8
Atru.chr9.2289 Acer truncatum HOM05D003823 ORTHO05D004866 5.0e-41 171.8 157 59.9
CSS0038842 Camellia sinensis var. sinensis HOM05D003823 ORTHO05D004866 5.3e-35 151.8 157 51.6
Lj4g0026130 Lotus japonicus HOM05D003823 ORTHO05D004866 7.7e-34 147.9 92 77.2
Thecc.02G319100 Theobroma cacao HOM05D003823 ORTHO05D004866 7.7e-34 147.9 93 76.3
Gohir.D02G085100 Gossypium hirsutum HOM05D003823 ORTHO05D004866 1.3e-33 147.1 90 76.7
Gorai.007G237600 Gossypium raimondii HOM05D003823 ORTHO05D004866 1.3e-33 147.1 90 76.7
Gohir.D06G139701 Gossypium hirsutum HOM05D003823 ORTHO05D017994 1.6e-31 140.2 87 75.9
Gohir.A08G078101 Gossypium hirsutum HOM05D003823 ORTHO05D004866 2.1e-31 139.8 103 67.0
Gorai.008G100600 Gossypium raimondii HOM05D003823 ORTHO05D004866 2.7e-31 139.4 87 75.9
Sabra15G0049800 Salix brachista HOM05D003823 ORTHO05D000412 2.7e-31 139.4 70 92.9
CSS0033378 Camellia sinensis var. sinensis HOM05D003823 ORTHO05D004866 6.1e-31 138.3 90 72.2
Gorai.005G191600 Gossypium raimondii HOM05D003823 ORTHO05D004866 6.1e-31 138.3 87 74.7
Gorai.003G098000 Gossypium raimondii HOM05D003823 ORTHO05D017994 1.0e-30 137.5 87 74.7
Gohir.A05G198301 Gossypium hirsutum HOM05D003823 ORTHO05D004866 6.7e-30 134.8 87 73.6
Gohir.D03G122233 Gossypium hirsutum HOM05D003823 ORTHO05D004866 6.7e-30 134.8 87 73.6
Gohir.D06G082500 Gossypium hirsutum HOM05D003823 ORTHO05D017994 2.2e-28 129.8 87 73.6
Gorai.013G138400 Gossypium raimondii HOM05D003823 ORTHO05D004866 4.5e-26 122.1 79 74.7
unitig_0.g782 Utricularia gibba HOM05D003823 ORTHO05D004866 1.3e-20 104.0 69 63.8
Gohir.A01G072501 Gossypium hirsutum HOM05D003823 ORTHO05D017994 5.0e-17 92.0 62 67.7
Gohir.A05G203200 Gossypium hirsutum HOM05D003823 ORTHO05D017994 5.0e-17 92.0 62 67.7
Gohir.A10G203700 Gossypium hirsutum HOM05D003823 ORTHO05D017994 5.0e-17 92.0 62 67.7
Gohir.A12G000600 Gossypium hirsutum HOM05D003823 ORTHO05D017994 5.0e-17 92.0 62 67.7
Gohir.D06G205050 Gossypium hirsutum HOM05D003823 ORTHO05D017994 5.0e-17 92.0 62 67.7
Gohir.D08G111400 Gossypium hirsutum HOM05D003823 ORTHO05D017994 5.0e-17 92.0 62 67.7
Sabra15G0057900 Salix brachista HOM05D003823 ORTHO05D349330 3.0e-14 82.8 41 95.1
Gorai.005G095900 Gossypium raimondii HOM05D003823 ORTHO05D218813 2.5e-08 63.2 44 72.7
Duzib248G1489 Durio zibethinus HOM05D003823 ORTHO05D186086 8.8e-06 54.7 44 63.6


User provided reference genes

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