Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c6_8810 Physcomitrium patens HOM05D004363 ORTHO05D005110 0.0e+00 2779.2 1400 100.0
Mapoly0053s0062 Marchantia polymorpha HOM05D004363 ORTHO05D005110 0.0e+00 1370.9 1441 51.1
AagrBONN_evm.TU.Sc2ySwM_228.1566 Anthoceros agrestis HOM05D004363 ORTHO05D005110 0.0e+00 1248.4 1193 54.0
SEGI_03324 Sequoiadendron giganteum HOM05D004363 ORTHO05D005110 0.0e+00 1191.4 1430 46.6
ATR0772G191 Amborella trichopoda HOM05D004363 ORTHO05D005110 2.0e-299 1033.1 1338 43.0
TAR169G0003 Trochodendron aralioides HOM05D004363 ORTHO05D005110 1.1e-286 990.7 1353 42.2
TAR628G0010 Trochodendron aralioides HOM05D004363 ORTHO05D005110 2.2e-282 976.5 1356 41.3
Aqoxy1G00638 Aquilegia oxysepala HOM05D004363 ORTHO05D005110 2.7e-280 969.5 1355 41.3
Nn6g34649 Nelumbo nucifera HOM05D004363 ORTHO05D005110 3.9e-279 965.7 1430 40.0
CSS0038425 Camellia sinensis var. sinensis HOM05D004363 ORTHO05D005110 2.1e-277 959.9 1342 40.4
Prupe.7G093600 Prunus persica HOM05D004363 ORTHO05D005110 2.8e-277 959.5 1355 41.0
Dinv31774 Davidia involucrata HOM05D004363 ORTHO05D005110 2.4e-276 956.4 1347 41.3
MD12G1041600 Malus domestica HOM05D004363 ORTHO05D005110 1.2e-275 954.1 1350 41.2
FvH4_6g20450 Fragaria vesca HOM05D004363 ORTHO05D005110 4.9e-274 948.7 1354 41.1
GSVIVG01022591001 Vitis vinifera HOM05D004363 ORTHO05D005110 6.4e-274 948.3 1326 41.7
COL.COLO4_29546 Corchorus olitorius HOM05D004363 ORTHO05D005110 2.1e-272 943.3 1355 39.4
CiPaw.10G018600 Carya illinoinensis HOM05D004363 ORTHO05D005110 6.0e-272 941.8 1363 40.0
Ciclev10010925m.g Citrus clementina HOM05D004363 ORTHO05D005110 7.8e-272 941.4 1352 40.2
CANSAT64G2344 Cannabis sativa HOM05D004363 ORTHO05D005110 2.3e-271 939.9 1345 40.7
MD14G1040700 Malus domestica HOM05D004363 ORTHO05D005110 5.6e-270 935.3 1365 40.2
PSO339G1158 Papaver somniferum HOM05D004363 ORTHO05D005110 8.1e-269 931.4 1347 39.8
FAN09G2042 Fragaria x ananassa HOM05D004363 ORTHO05D005110 1.8e-268 930.2 1449 39.4
Eucgr.A02575 Eucalyptus grandis HOM05D004363 ORTHO05D005110 5.3e-268 928.7 1352 40.2
PSO384G4461 Papaver somniferum HOM05D004363 ORTHO05D005110 5.3e-268 928.7 1349 39.8
Duzib093G0100 Durio zibethinus HOM05D004363 ORTHO05D005110 9.0e-268 927.9 1348 39.2
Atru.chr8.1332 Acer truncatum HOM05D004363 ORTHO05D005110 2.9e-266 922.9 1346 39.7
Oeu035643.1 Olea europaea HOM05D004363 ORTHO05D005110 1.1e-265 921.0 1342 40.0
Potri.016G068800 Populus trichocarpa HOM05D004363 ORTHO05D005110 1.9e-265 920.2 1347 39.4
TPR.G31289 Trifolium pratense HOM05D004363 ORTHO05D005110 1.9e-265 920.2 1346 39.3
THA.LOC104820934 Tarenaya hassleriana HOM05D004363 ORTHO05D005110 9.3e-265 917.9 1351 39.2
Psat0s3922g0040 Pisum sativum HOM05D004363 ORTHO05D005110 1.2e-264 917.5 1347 39.5
Lj1g0000064 Lotus japonicus HOM05D004363 ORTHO05D005110 3.9e-263 912.5 1354 38.8
Glyma.19G200400 Glycine max HOM05D004363 ORTHO05D005110 3.3e-262 909.4 1346 39.7
Sabra16G0069700 Salix brachista HOM05D004363 ORTHO05D005110 3.3e-262 909.4 1360 38.4
Ca_09062_v3 Cicer arietinum L. HOM05D004363 ORTHO05D005110 9.6e-262 907.9 1359 38.9
Medtr7g106380 Medicago truncatula HOM05D004363 ORTHO05D005110 1.3e-261 907.5 1346 39.2
Carub.0006s1447 Capsella rubella HOM05D004363 ORTHO05D005110 4.8e-261 905.6 1357 38.5
ECA233G0072 Erigeron canadensis HOM05D004363 ORTHO05D005110 4.8e-261 905.6 1349 38.9
PGR004G0690 Punica granatum HOM05D004363 ORTHO05D005110 4.8e-261 905.6 1348 39.8
AT5G16280 Arabidopsis thaliana HOM05D004363 ORTHO05D005110 1.8e-260 903.7 1347 38.5
CAN.G911.40 Capsicum annuum HOM05D004363 ORTHO05D005110 3.1e-260 902.9 1344 39.3
Sopen01g002950 Solanum pennellii HOM05D004363 ORTHO05D005110 4.0e-260 902.5 1344 38.8
MSTRG.19302 Avicennia marina HOM05D004363 ORTHO05D005110 6.9e-260 901.7 1344 39.7
Glyma.03G202700 Glycine max HOM05D004363 ORTHO05D005110 9.0e-260 901.4 1345 39.5
Sed0002127 Sechium edule HOM05D004363 ORTHO05D005110 2.6e-259 899.8 1351 39.4
Gorai.009G393900 Gossypium raimondii HOM05D004363 ORTHO05D005110 3.4e-259 899.4 1371 39.2
Duzib128G0297 Durio zibethinus HOM05D004363 ORTHO05D005110 1.3e-258 897.5 1374 37.5
HanXRQChr02g0053261 Helianthus annuus HOM05D004363 ORTHO05D005110 1.7e-258 897.1 1346 38.6
BolC3t13384H Brassica oleracea HOM05D004363 ORTHO05D005110 2.2e-258 896.7 1336 38.5
Thhalv10012466m.g Eutrema salsugineum HOM05D004363 ORTHO05D005110 2.2e-258 896.7 1350 38.7
Migut.J00693 Erythranthe guttata HOM05D004363 ORTHO05D005110 2.9e-258 896.3 1355 39.6
Sp6g27880 Schrenkiella parvula HOM05D004363 ORTHO05D005110 2.9e-258 896.3 1345 38.1
Solyc01g006960.3 Solanum lycopersicum HOM05D004363 ORTHO05D005110 2.9e-258 896.3 1340 38.4
arahy.Tifrunner.gnm1.ann1.KT4HPP Arachis hypogaea HOM05D004363 ORTHO05D005110 3.8e-258 896.0 1340 39.2
TWI74G0412 Tripterygium wilfordii HOM05D004363 ORTHO05D005110 4.9e-258 895.6 1347 39.6
AL6G27170 Arabidopsis lyrata HOM05D004363 ORTHO05D005110 6.4e-258 895.2 1347 38.4
arahy.Tifrunner.gnm1.ann1.D60SL5 Arachis hypogaea HOM05D004363 ORTHO05D005110 6.4e-258 895.2 1346 38.9
Gohir.A11G315700 Gossypium hirsutum HOM05D004363 ORTHO05D005110 1.9e-257 893.6 1349 38.3
Phvul.001G196200 Phaseolus vulgaris HOM05D004363 ORTHO05D005110 5.4e-257 892.1 1347 39.0
vmacro07483 Vaccinium macrocarpon HOM05D004363 ORTHO05D005110 5.4e-257 892.1 1343 39.5
C03p08890 Brassica napus HOM05D004363 ORTHO05D005110 9.3e-257 891.3 1336 38.5
Gorai.007G363900 Gossypium raimondii HOM05D004363 ORTHO05D005110 9.3e-257 891.3 1346 38.3
Gohir.D11G332900 Gossypium hirsutum HOM05D004363 ORTHO05D005110 2.1e-256 890.2 1346 38.3
CsaV3_3G038050 Cucumis sativus L. HOM05D004363 ORTHO05D005110 7.9e-256 888.3 1390 38.2
VMungo1383G2497 Vigna mungo HOM05D004363 ORTHO05D005110 1.3e-255 887.5 1346 38.4
FAN14G2782 Fragaria x ananassa HOM05D004363 ORTHO05D005110 2.3e-255 886.7 1476 38.0
DCAR_020694 Daucus carota HOM05D004363 ORTHO05D005110 6.7e-255 885.2 1416 37.1
Lalb_Chr01g0017831 Lupinus albus HOM05D004363 ORTHO05D005110 1.1e-254 884.4 1344 38.2
HPP92_013952 Vanilla planifolia HOM05D004363 ORTHO05D005110 1.5e-254 884.0 1357 38.7
QL07p036386 Quercus lobata HOM05D004363 ORTHO05D005110 4.3e-254 882.5 1184 43.2
BolC9t58910H Brassica oleracea HOM05D004363 ORTHO05D005110 9.6e-254 881.3 1351 37.9
BraA03t10093Z Brassica rapa HOM05D004363 ORTHO05D005110 1.6e-253 880.6 1351 38.3
Zm00001eb060010 Zea mays HOM05D004363 ORTHO05D005110 1.6e-253 880.6 1338 37.9
Aa31LG11G13340 Aethionema arabicum HOM05D004363 ORTHO05D005110 4.8e-253 879.0 1353 37.8
BraA10t44344Z Brassica rapa HOM05D004363 ORTHO05D005110 4.8e-253 879.0 1344 38.0
A10p22780 Brassica napus HOM05D004363 ORTHO05D005110 6.2e-253 878.6 1347 38.1
A03p07650 Brassica napus HOM05D004363 ORTHO05D005110 1.4e-252 877.5 1351 38.2
TWI77G0878 Tripterygium wilfordii HOM05D004363 ORTHO05D005110 1.4e-252 877.5 1377 38.9
AUR62041186 Chenopodium quinoa HOM05D004363 ORTHO05D005110 1.2e-251 874.4 1348 37.9
Sc01g0005470 Simmondsia chinensis HOM05D004363 ORTHO05D005110 2.0e-251 873.6 1369 39.2
Manes.08G034300 Manihot esculenta HOM05D004363 ORTHO05D005110 4.9e-250 869.0 1301 39.2
EL10Ac5g11738 Beta vulgaris HOM05D004363 ORTHO05D005110 1.9e-249 867.1 1394 37.7
ClCG10G018260 Citrullus lanatus HOM05D004363 ORTHO05D005110 3.2e-249 866.3 1413 38.0
MSTRG.5891 Avicennia marina HOM05D004363 ORTHO05D005110 1.6e-248 864.0 1361 38.0
FAN02G1528 Fragaria x ananassa HOM05D004363 ORTHO05D005110 1.6e-248 864.0 1124 43.2
Cfa020046 Carpinus fangiana HOM05D004363 ORTHO05D005110 7.9e-248 861.7 1351 39.1
SMO196G0050 Selaginella moellendorffii HOM05D004363 ORTHO05D005110 5.6e-246 855.5 971 47.8
RcHm_v2.0_Chr3g0476301 Rosa chinensis HOM05D004363 ORTHO05D005110 9.6e-246 854.7 1186 41.1
BcaB01g04994 Brassica carinata HOM05D004363 ORTHO05D005110 3.7e-245 852.8 1351 37.5
Lsat_1_v5_gn_6_33820 Lactuca sativa HOM05D004363 ORTHO05D005110 6.2e-245 852.0 1334 38.3
Thecc.05G106200 Theobroma cacao HOM05D004363 ORTHO05D005110 9.0e-244 848.2 1233 39.5
Rhsim11G0045000 Rhododendron simsii HOM05D004363 ORTHO05D005110 1.5e-243 847.4 1226 39.9
Dinv12347 Davidia involucrata HOM05D004363 ORTHO05D005110 3.5e-240 836.3 1123 42.5
Os03g0786900 Oryza sativa ssp. japonica HOM05D004363 ORTHO05D005110 1.8e-236 823.9 1329 36.9
Cc06_g06670 Coffea canephora HOM05D004363 ORTHO05D005110 1.5e-235 820.8 1184 39.5
AUR62030686 Chenopodium quinoa HOM05D004363 ORTHO05D005110 5.9e-235 818.9 1346 36.7
Hund10860 Selenicereus undatus HOM05D004363 ORTHO05D005110 3.8e-234 816.2 1361 37.9
Lalb_Chr25g0287961 Lupinus albus HOM05D004363 ORTHO05D005110 1.1e-230 804.7 1342 36.3
SGA_v2.0_scaffold13G06653 Striga asiatica HOM05D004363 ORTHO05D005110 4.1e-228 796.2 1420 36.1
CDE11G0453 Ceratophyllum demersum HOM05D004363 ORTHO05D005110 3.8e-226 789.6 1356 36.4
BcaNung06113 Brassica carinata HOM05D004363 ORTHO05D005110 1.0e-218 765.0 1217 37.1
Peaxi162Scf00582g00064 Petunia axillaris HOM05D004363 ORTHO05D005110 2.2e-218 763.8 1202 37.7
FAN05G1872 Fragaria x ananassa HOM05D004363 ORTHO05D005110 5.5e-217 759.2 1183 39.8
FAN05G3395 Fragaria x ananassa HOM05D004363 ORTHO05D005110 2.0e-214 750.7 1217 38.9
MELO3C009547.2 Cucumis melo HOM05D004363 ORTHO05D005110 3.7e-213 746.5 1444 34.6
Gohir.D04G092000 Gossypium hirsutum HOM05D004363 ORTHO05D005110 7.0e-212 742.3 1139 39.4
CARHR197030 Cardamine hirsuta HOM05D004363 ORTHO05D005110 6.4e-165 586.3 672 44.2
Ah.07g203620 Amaranthus hybridus HOM05D004363 ORTHO05D005110 4.0e-159 567.0 883 37.9
Nitab4.5_0001177g0040 Nicotiana tabacum HOM05D004363 ORTHO05D005110 8.4e-141 506.1 954 33.1
Gohir.A04G054800 Gossypium hirsutum HOM05D004363 ORTHO05D005110 1.1e-132 479.2 833 36.6
Cre01.g024400 Chlamydomonas reinhardtii HOM05D004363 ORTHO05D005110 1.3e-120 439.1 1113 30.5
Cpa.g.sc104.18 Carica papaya HOM05D004363 ORTHO05D005110 1.9e-100 372.1 401 47.6
PRCOL_00001893 Prasinoderma coloniale HOM05D004363 ORTHO05D005110 8.0e-99 366.7 1057 29.3
Lj1A1055T62 Lonicera japonica HOM05D004363 ORTHO05D005110 9.4e-92 343.2 371 49.1
Haze_20158 Corylus avellana HOM05D004363 ORTHO05D005110 4.4e-89 334.3 520 38.3
unitig_578.g15812 Utricularia gibba HOM05D004363 ORTHO05D005110 7.5e-89 333.6 1338 24.5
CBR_g74641 Chara braunii HOM05D004363 ORTHO05D005110 1.3e-88 332.8 718 34.4
TAR623G0254 Trochodendron aralioides HOM05D004363 ORTHO05D005110 7.0e-87 327.0 595 36.0
Nitab4.5_0001191g0010 Nicotiana tabacum HOM05D004363 ORTHO05D005110 2.0e-78 298.9 677 31.0
MCO09G191 Micromonas commoda HOM05D004363 ORTHO05D005110 4.7e-75 287.7 1225 25.9
Cpa.g.sc104.16 Carica papaya HOM05D004363 ORTHO05D005110 1.6e-62 246.1 349 39.0
SEGI_33831 Sequoiadendron giganteum HOM05D004363 ORTHO05D005110 5.6e-60 237.7 196 57.1
Haze_20157 Corylus avellana HOM05D004363 ORTHO05D005110 4.9e-56 224.6 229 48.9
Cpa.g.sc104.13 Carica papaya HOM05D004363 ORTHO05D005110 1.4e-55 223.0 488 33.4
Gohir.A04G054750 Gossypium hirsutum HOM05D004363 ORTHO05D005110 2.3e-53 215.7 221 48.0
Lj1C1055T8 Lonicera japonica HOM05D004363 ORTHO05D005110 2.3e-53 215.7 204 49.0
Gohir.D04G091900 Gossypium hirsutum HOM05D004363 ORTHO05D005110 3.9e-53 214.9 208 48.6
Actinidia03876 Actinidia chinensis HOM05D004363 ORTHO05D005110 1.1e-47 196.8 464 31.0
Actinidia03984 Actinidia chinensis HOM05D004363 ORTHO05D005110 2.1e-43 182.6 438 29.5
Nn3g20229 Nelumbo nucifera HOM05D004363 ORTHO05D005110 1.7e-37 162.9 183 45.9
CSS0042424 Camellia sinensis var. sinensis HOM05D004363 ORTHO05D005110 1.1e-36 160.2 164 47.0
SEGI_22432 Sequoiadendron giganteum HOM05D004363 ORTHO05D005110 1.1e-36 160.2 209 42.1
SEGI_10491 Sequoiadendron giganteum HOM05D004363 ORTHO05D005110 8.1e-35 154.1 122 55.7
SEGI_28545 Sequoiadendron giganteum HOM05D004363 ORTHO05D005110 1.1e-31 143.7 121 59.5
CSS0011588 Camellia sinensis var. sinensis HOM05D004363 ORTHO05D005110 1.4e-31 143.3 148 46.6
Actinidia03986 Actinidia chinensis HOM05D004363 ORTHO05D005110 1.2e-25 123.6 120 47.5
Hma1.2p1_0064F.1_g034600 Hydrangea macrophylla HOM05D004363 ORTHO05D005110 1.3e-24 120.2 291 32.0
SHI08956 Sapria himalayana HOM05D004363 ORTHO05D005110 3.8e-24 118.6 123 51.2
SEGI_19509 Sequoiadendron giganteum HOM05D004363 ORTHO05D005110 2.8e-19 102.4 90 54.4
CSS0037163 Camellia sinensis var. sinensis HOM05D004363 ORTHO05D005110 1.4e-18 100.1 85 55.3
Ah.07g203610 Amaranthus hybridus HOM05D004363 ORTHO05D005110 2.6e-17 95.9 210 29.5
Actinidia03879 Actinidia chinensis HOM05D004363 ORTHO05D005110 2.2e-16 92.8 143 36.4
C09p60760 Brassica napus HOM05D004363 ORTHO05D005110 4.9e-16 91.7 113 43.4
SHI08962 Sapria himalayana HOM05D004363 ORTHO05D005110 2.5e-12 79.3 224 28.6
Ah.07g203630 Amaranthus hybridus HOM05D004363 ORTHO05D005110 1.3e-11 77.0 54 61.1
SHI08951 Sapria himalayana HOM05D004363 ORTHO05D005110 4.8e-11 75.1 126 39.7
SHI08954 Sapria himalayana HOM05D004363 ORTHO05D005110 4.1e-10 72.0 62 48.4
SHI08961 Sapria himalayana HOM05D004363 ORTHO05D005110 1.2e-09 70.5 375 24.0
SHI08960 Sapria himalayana HOM05D004363 ORTHO05D005110 5.9e-09 68.2 190 28.4
arahy.Tifrunner.gnm1.ann1.BA6WS2 Arachis hypogaea HOM05D004363 ORTHO05D005110 6.5e-08 64.7 55 50.9
CAN.G526.3 Capsicum annuum HOM05D004363 ORTHO05D005110 7.2e-07 61.2 76 46.1
Rhsim11G0045100 Rhododendron simsii HOM05D004363 ORTHO05D005110 9.3e-07 60.8 128 32.8
ATR0820G261 Amborella trichopoda HOM05D004363 ORTHO05D005110 2.7e-06 59.3 234 24.8
Glyma.19G199100 Glycine max HOM05D003781 ORTHO05D004299 2.7e-06 59.3 55 47.3
Glyma.19G200100 Glycine max HOM05D003781 ORTHO05D004299 2.7e-06 59.3 73 41.1
arahy.Tifrunner.gnm1.ann1.P34FZA Arachis hypogaea HOM05D004363 ORTHO05D005110 7.9e-06 57.8 55 45.5


User provided reference genes

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