Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c6_6030 Physcomitrium patens HOM05D006166 ORTHO05D007663 1.2e-186 656.4 328 100.0
Pp3c6_6031 Physcomitrium patens HOM05D006166 ORTHO05D007663 1.2e-186 656.4 328 100.0
Mapoly0026s0056 Marchantia polymorpha HOM05D006166 ORTHO05D007663 4.9e-92 342.0 347 52.4
ATR0564G319 Amborella trichopoda HOM05D006166 ORTHO05D007663 9.3e-83 311.2 337 51.9
SEGI_35388 Sequoiadendron giganteum HOM05D006166 ORTHO05D007663 3.5e-82 309.3 338 50.6
TAR628G0634 Trochodendron aralioides HOM05D006166 ORTHO05D007663 3.3e-80 302.8 323 50.8
SMO174G0124 Selaginella moellendorffii HOM05D006166 ORTHO05D007663 1.8e-78 297.0 257 57.2
Nn5g29064 Nelumbo nucifera HOM05D006166 ORTHO05D007663 3.8e-76 289.3 329 48.6
CDE05G0221 Ceratophyllum demersum HOM05D006166 ORTHO05D007663 6.5e-76 288.5 321 48.6
QL11p020534 Quercus lobata HOM05D006166 ORTHO05D007663 6.5e-76 288.5 325 49.2
TWI14G0161 Tripterygium wilfordii HOM05D006166 ORTHO05D007663 1.4e-75 287.3 333 48.0
CSS0045599 Camellia sinensis var. sinensis HOM05D006166 ORTHO05D007663 3.2e-75 286.2 327 48.6
ECA236G4484 Erigeron canadensis HOM05D006166 ORTHO05D007663 3.2e-75 286.2 307 49.5
PSO133G0062 Papaver somniferum HOM05D006166 ORTHO05D007663 4.2e-75 285.8 318 50.6
Eucgr.G00773 Eucalyptus grandis HOM05D006166 ORTHO05D007663 5.5e-75 285.4 269 55.0
GSVIVG01003077001 Vitis vinifera HOM05D006166 ORTHO05D007663 5.5e-75 285.4 318 50.3
Oeu007956.1 Olea europaea HOM05D006166 ORTHO05D007663 9.3e-75 284.6 317 47.6
Gorai.013G062000 Gossypium raimondii HOM05D006166 ORTHO05D007663 1.2e-74 284.3 325 49.2
MBI05_g32464_MAGBIO Magnolia biondii HOM05D006166 ORTHO05D007663 2.1e-74 283.5 333 48.6
Aqoxy6G00587 Aquilegia oxysepala HOM05D006166 ORTHO05D007663 2.7e-74 283.1 332 47.6
Lsat_1_v5_gn_7_80840 Lactuca sativa HOM05D006166 ORTHO05D007663 2.7e-74 283.1 306 48.7
Oeu026161.1 Olea europaea HOM05D006166 ORTHO05D007663 2.7e-74 283.1 333 45.3
Gohir.D13G055000 Gossypium hirsutum HOM05D006166 ORTHO05D007663 3.5e-74 282.7 325 48.9
Nn1g05303 Nelumbo nucifera HOM05D006166 ORTHO05D007663 3.5e-74 282.7 333 47.7
CiPaw.06G152600 Carya illinoinensis HOM05D006166 ORTHO05D007663 4.6e-74 282.3 325 48.3
ClCG09G015330 Citrullus lanatus HOM05D006166 ORTHO05D007663 4.6e-74 282.3 329 47.4
SGA_v2.0_scaffold83G26295 Striga asiatica HOM05D006166 ORTHO05D007663 1.0e-73 281.2 263 53.6
CsaV3_7G006420 Cucumis sativus L. HOM05D006166 ORTHO05D007663 1.3e-73 280.8 329 47.7
HanXRQChr11g0338151 Helianthus annuus HOM05D006166 ORTHO05D007663 3.9e-73 279.3 269 52.0
Duzib132G0630 Durio zibethinus HOM05D006166 ORTHO05D007663 6.7e-73 278.5 318 49.1
Prupe.8G062500 Prunus persica HOM05D006166 ORTHO05D007663 6.7e-73 278.5 320 48.8
AagrBONN_evm.TU.Sc2ySwM_117.2616 Anthoceros agrestis HOM05D006166 ORTHO05D007663 8.7e-73 278.1 319 52.7
CiPaw.05G036600 Carya illinoinensis HOM05D006166 ORTHO05D007663 1.1e-72 277.7 325 47.7
Gohir.A13G066600 Gossypium hirsutum HOM05D006166 ORTHO05D007663 1.1e-72 277.7 325 48.9
COL.COLO4_24968 Corchorus olitorius HOM05D006166 ORTHO05D007663 1.9e-72 276.9 324 48.5
Thecc.02G140300 Theobroma cacao HOM05D006166 ORTHO05D007663 1.9e-72 276.9 318 48.7
PSO541G1328 Papaver somniferum HOM05D006166 ORTHO05D007663 3.3e-72 276.2 315 49.5
MELO3C018652.2 Cucumis melo HOM05D006166 ORTHO05D007663 4.3e-72 275.8 329 47.1
MD10G1052200 Malus domestica HOM05D006166 ORTHO05D007663 4.3e-72 275.8 319 47.6
Sed0015493 Sechium edule HOM05D006166 ORTHO05D007663 4.3e-72 275.8 324 47.2
Actinidia00261 Actinidia chinensis HOM05D006166 ORTHO05D007663 5.7e-72 275.4 263 54.0
Rhsim11G0136200 Rhododendron simsii HOM05D006166 ORTHO05D007663 5.7e-72 275.4 334 45.5
SalBow5G4894 Salvia bowleyana HOM05D006166 ORTHO05D007663 5.7e-72 275.4 265 52.5
Manes.14G166700 Manihot esculenta HOM05D006166 ORTHO05D007663 9.6e-72 274.6 322 49.7
Atru.chr6.1112 Acer truncatum HOM05D006166 ORTHO05D007663 3.7e-71 272.7 326 47.5
AUR62013110 Chenopodium quinoa HOM05D006166 ORTHO05D007663 3.7e-71 272.7 320 48.4
Ciclev10028390m.g Citrus clementina HOM05D006166 ORTHO05D007663 4.8e-71 272.3 346 45.4
Migut.B00617 Erythranthe guttata HOM05D006166 ORTHO05D007663 4.8e-71 272.3 324 46.6
PGR042G2317 Punica granatum HOM05D006166 ORTHO05D007663 4.8e-71 272.3 279 51.6
Cfa005611 Carpinus fangiana HOM05D006166 ORTHO05D007663 6.3e-71 271.9 325 48.0
Glyma.08G073700 Glycine max HOM05D006166 ORTHO05D007663 6.3e-71 271.9 325 46.2
Duzib248G0370 Durio zibethinus HOM05D006166 ORTHO05D007663 1.8e-70 270.4 318 49.1
Lalb_Chr10g0097721 Lupinus albus HOM05D006166 ORTHO05D007663 3.1e-70 269.6 266 51.9
DCAR_009495 Daucus carota HOM05D000068 ORTHO05D000084 4.1e-70 269.2 325 48.3
FAN26G0367 Fragaria x ananassa HOM05D006166 ORTHO05D007663 4.1e-70 269.2 321 45.8
Manes.06G010300 Manihot esculenta HOM05D006166 ORTHO05D007663 4.1e-70 269.2 258 53.5
FAN28G2956 Fragaria x ananassa HOM05D006166 ORTHO05D007663 9.0e-70 268.1 321 45.5
BraA03t13646Z Brassica rapa HOM05D006166 ORTHO05D007663 1.2e-69 267.7 333 45.6
Lj4g0006983 Lotus japonicus HOM05D006166 ORTHO05D007663 1.2e-69 267.7 266 51.5
Phvul.002G207800 Phaseolus vulgaris HOM05D006166 ORTHO05D007663 1.5e-69 267.3 325 45.5
RcHm_v2.0_Chr2g0123601 Rosa chinensis HOM05D006166 ORTHO05D007663 1.5e-69 267.3 319 46.1
VMungo0251G2633 Vigna mungo HOM05D006166 ORTHO05D007663 1.5e-69 267.3 323 45.5
CANSAT11G1721 Cannabis sativa HOM05D006166 ORTHO05D007663 2.0e-69 266.9 325 46.5
Os03g0192000 Oryza sativa ssp. japonica HOM05D006166 ORTHO05D007663 2.0e-69 266.9 322 46.0
vmacro01821 Vaccinium macrocarpon HOM05D006166 ORTHO05D007663 2.0e-69 266.9 334 44.6
MSTRG.16576 Avicennia marina HOM05D006166 ORTHO05D007663 2.6e-69 266.5 305 47.5
Cpa.g.sc42.78 Carica papaya HOM05D006166 ORTHO05D007663 2.6e-69 266.5 269 52.4
C03p55960 Brassica napus HOM05D006166 ORTHO05D007663 3.4e-69 266.2 333 45.3
FvH4_1g25470 Fragaria vesca HOM05D006166 ORTHO05D007663 3.4e-69 266.2 321 45.5
THA.LOC104807167 Tarenaya hassleriana HOM05D006166 ORTHO05D007663 3.4e-69 266.2 326 44.8
EL10Ac9g21463 Beta vulgaris HOM05D006166 ORTHO05D007663 4.5e-69 265.8 255 53.3
A03p45110 Brassica napus HOM05D006166 ORTHO05D007663 5.9e-69 265.4 333 45.0
BolC3t17880H Brassica oleracea HOM05D006166 ORTHO05D007663 1.0e-68 264.6 333 45.0
Potri.001G206400 Populus trichocarpa HOM05D006166 ORTHO05D007663 1.0e-68 264.6 316 47.2
CAN.G924.1 Capsicum annuum HOM05D006166 ORTHO05D007663 1.3e-68 264.2 271 48.7
Nitab4.5_0000215g0090 Nicotiana tabacum HOM05D006166 ORTHO05D007663 1.3e-68 264.2 287 47.7
Psat7g098480 Pisum sativum HOM05D006166 ORTHO05D007663 1.3e-68 264.2 318 44.7
BcaC01g03110 Brassica carinata HOM05D006166 ORTHO05D007663 1.7e-68 263.8 333 45.0
arahy.Tifrunner.gnm1.ann1.KS83Z6 Arachis hypogaea HOM05D006166 ORTHO05D007663 2.2e-68 263.5 325 44.3
BcaB08g34548 Brassica carinata HOM05D006166 ORTHO05D007663 2.2e-68 263.5 331 45.3
Nitab4.5_0001937g0070 Nicotiana tabacum HOM05D006166 ORTHO05D007663 2.2e-68 263.5 287 47.7
unitig_26.g9064 Utricularia gibba HOM05D006166 ORTHO05D007663 2.2e-68 263.5 335 44.5
arahy.Tifrunner.gnm1.ann1.1L8CHD Arachis hypogaea HOM05D006166 ORTHO05D007663 3.8e-68 262.7 325 44.3
Peaxi162Scf00152g01019 Petunia axillaris HOM05D006166 ORTHO05D007663 3.8e-68 262.7 271 48.0
AT2G13840 Arabidopsis thaliana HOM05D006166 ORTHO05D007663 5.0e-68 262.3 325 46.2
AL3G45670 Arabidopsis lyrata HOM05D006166 ORTHO05D007663 6.5e-68 261.9 325 45.5
Glyma.05G118600 Glycine max HOM05D006166 ORTHO05D007663 6.5e-68 261.9 266 50.0
Ca_18343_v3 Cicer arietinum L. HOM05D006166 ORTHO05D007663 8.5e-68 261.5 325 45.5
Thhalv10022694m.g Eutrema salsugineum HOM05D006166 ORTHO05D007663 8.5e-68 261.5 331 45.0
Sabra01G0159700 Salix brachista HOM05D006166 ORTHO05D007663 8.5e-68 261.5 316 46.8
Sabra01G0159900 Salix brachista HOM05D006166 ORTHO05D007663 8.5e-68 261.5 316 46.8
Cc02_g21650 Coffea canephora HOM05D006166 ORTHO05D007663 1.4e-67 260.8 316 45.6
FAN19G2366 Fragaria x ananassa HOM05D006166 ORTHO05D007663 7.2e-67 258.5 321 45.2
PGSC0003DMG400022942 Solanum tuberosum HOM05D006166 ORTHO05D007663 9.3e-67 258.1 271 48.0
TPR.G10454 Trifolium pratense HOM05D006166 ORTHO05D007663 9.3e-67 258.1 265 49.4
Os02g0752600 Oryza sativa ssp. japonica HOM05D006166 ORTHO05D007663 1.2e-66 257.7 258 52.3
Medtr4g094258 Medicago truncatula HOM05D006166 ORTHO05D007663 1.6e-66 257.3 268 50.0
Carub.0003s2824 Capsella rubella HOM05D006166 ORTHO05D007663 2.7e-66 256.5 266 50.0
AUR62010115 Chenopodium quinoa HOM05D006166 ORTHO05D007663 3.6e-66 256.1 311 46.3
Hund00054 Selenicereus undatus HOM05D006166 ORTHO05D007663 3.6e-66 256.1 262 50.8
Sopen11g020300 Solanum pennellii HOM05D006166 ORTHO05D007663 3.6e-66 256.1 263 49.0
Sp3g27280 Schrenkiella parvula HOM05D006166 ORTHO05D007663 7.9e-66 255.0 324 43.8
Hund06393 Selenicereus undatus HOM05D006166 ORTHO05D007663 1.5e-64 250.8 277 47.7
Lj5A240G38 Lonicera japonica HOM05D006166 ORTHO05D007663 3.3e-64 249.6 269 50.9
HPP92_016815 Vanilla planifolia HOM05D006166 ORTHO05D007663 9.1e-62 241.5 255 49.8
FAN23G1673 Fragaria x ananassa HOM05D006166 ORTHO05D007663 7.7e-61 238.4 288 46.2
Aa31LG8G12460 Aethionema arabicum HOM05D006166 ORTHO05D007663 3.0e-57 226.5 382 36.9
MBI02_g36658_MAGBIO Magnolia biondii HOM05D006166 ORTHO05D007663 6.7e-57 225.3 297 44.8
CARHR104670 Cardamine hirsuta HOM05D006166 ORTHO05D007663 2.2e-55 220.3 192 57.3
Sc14g0003300 Simmondsia chinensis HOM05D006166 ORTHO05D007663 8.2e-55 218.4 192 56.8
Ah.01g009510 Amaranthus hybridus HOM05D006166 ORTHO05D007663 7.9e-50 201.8 213 49.3
Cc03_g14510 Coffea canephora HOM05D006166 ORTHO05D007663 1.1e-48 198.0 224 47.3
Zm00001eb007010 Zea mays HOM05D006166 ORTHO05D007663 4.8e-47 192.6 206 49.0
Cfa005618 Carpinus fangiana HOM05D006166 ORTHO05D007663 7.7e-45 185.3 232 47.0
Dinv09040 Davidia involucrata HOM05D006166 ORTHO05D007663 8.5e-44 181.8 154 58.4
Ciclev10013528m.g Citrus clementina HOM05D006166 ORTHO05D007663 1.4e-38 164.5 174 51.1
Glyma.17G217500 Glycine max HOM05D006166 ORTHO05D007663 7.7e-37 158.7 168 47.6
Ciclev10033347m.g Citrus clementina HOM05D006166 ORTHO05D007663 8.5e-36 155.2 142 54.9
Haze_10674 Corylus avellana HOM05D006166 ORTHO05D007663 3.0e-33 146.7 261 37.2
CDE05G0065 Ceratophyllum demersum HOM05D006166 ORTHO05D007663 4.8e-31 139.4 234 38.0
Dinv24200 Davidia involucrata HOM05D006166 ORTHO05D007663 1.6e-29 134.4 185 43.2
Solyc11g044800.3 Solanum lycopersicum HOM05D006166 ORTHO05D007663 2.0e-29 134.0 131 50.4
Pp3s70_110 Physcomitrium patens HOM05D006166 ORTHO05D007663 2.4e-22 110.5 218 34.9
Haze_10658 Corylus avellana HOM05D006166 ORTHO05D007663 5.4e-06 56.2 119 33.6
Haze_10680 Corylus avellana HOM05D006166 ORTHO05D007663 9.2e-06 55.5 121 34.7


User provided reference genes

Program Settings