Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c6_20250 Physcomitrium patens HOM05D005641 ORTHO05D007953 9.7e-85 316.6 143 100.0
SMO119G0506 Selaginella moellendorffii HOM05D005641 ORTHO05D007953 4.7e-39 164.9 117 61.5
SEGI_20221 Sequoiadendron giganteum HOM05D005641 ORTHO05D007953 2.3e-38 162.5 134 54.5
SEGI_25796 Sequoiadendron giganteum HOM05D005641 ORTHO05D007953 2.3e-38 162.5 134 54.5
MD05G1097100 Malus domestica HOM05D005641 ORTHO05D007953 1.3e-36 156.8 136 51.5
DCAR_029115 Daucus carota HOM05D005641 ORTHO05D007953 2.2e-36 156.0 137 48.9
QL02p069388 Quercus lobata HOM05D005641 ORTHO05D007953 2.2e-36 156.0 124 55.6
Thecc.02G114700 Theobroma cacao HOM05D005641 ORTHO05D007953 3.7e-36 155.2 128 51.6
Medtr5g005150 Medicago truncatula HOM05D005641 ORTHO05D007953 4.9e-36 154.8 123 52.8
PSO675G2895 Papaver somniferum HOM05D005641 ORTHO05D007953 4.9e-36 154.8 128 53.1
PGR042G1829 Punica granatum HOM05D005641 ORTHO05D007953 1.1e-35 153.7 134 52.2
Hma1.2p1_1023F.1_g248880 Hydrangea macrophylla HOM05D005641 ORTHO05D007953 1.4e-35 153.3 117 56.4
SGA_v2.0_scaffold337G49200 Striga asiatica HOM05D005641 ORTHO05D007953 1.4e-35 153.3 138 50.7
CiPaw.06G166900 Carya illinoinensis HOM05D005641 ORTHO05D007953 1.8e-35 152.9 128 52.3
Oeu037265.1 Olea europaea HOM05D005641 ORTHO05D007953 3.1e-35 152.1 118 55.1
RcHm_v2.0_Chr6g0253411 Rosa chinensis HOM05D005641 ORTHO05D007953 3.1e-35 152.1 118 53.4
unitig_744.g24456 Utricularia gibba HOM05D005641 ORTHO05D007953 3.1e-35 152.1 128 53.1
Sed0000346 Sechium edule HOM05D005641 ORTHO05D007953 4.1e-35 151.8 117 54.7
Cfa004645 Carpinus fangiana HOM05D005641 ORTHO05D007953 5.4e-35 151.4 116 56.0
Haze_10242 Corylus avellana HOM05D005641 ORTHO05D007953 5.4e-35 151.4 116 56.0
Dinv42223 Davidia involucrata HOM05D005641 ORTHO05D007953 7.0e-35 151.0 125 51.2
Aa31LG8G12890 Aethionema arabicum HOM05D005641 ORTHO05D007953 9.2e-35 150.6 140 50.7
FvH4_2g04060 Fragaria vesca HOM05D005641 ORTHO05D007953 9.2e-35 150.6 117 53.8
FAN24G2036 Fragaria x ananassa HOM05D005641 ORTHO05D007953 9.2e-35 150.6 117 54.7
Nn1g04606 Nelumbo nucifera HOM05D005641 ORTHO05D007953 9.2e-35 150.6 117 55.6
MELO3C017992.2 Cucumis melo HOM05D005641 ORTHO05D007953 1.2e-34 150.2 116 55.2
FAN15G3008 Fragaria x ananassa HOM05D005641 ORTHO05D007953 1.2e-34 150.2 117 53.8
PSO541G1794 Papaver somniferum HOM05D005641 ORTHO05D007953 1.2e-34 150.2 118 54.2
Aqoxy6G02714 Aquilegia oxysepala HOM05D005641 ORTHO05D007953 1.6e-34 149.8 116 56.0
COL.COLO4_32537 Corchorus olitorius HOM05D005641 ORTHO05D007953 1.6e-34 149.8 125 52.0
Sp3g28020 Schrenkiella parvula HOM05D005641 ORTHO05D007953 1.6e-34 149.8 141 51.8
Lj1g0011960 Lotus japonicus HOM05D005641 ORTHO05D007953 2.0e-34 149.4 139 50.4
CARHR284800 Cardamine hirsuta HOM05D005641 ORTHO05D007953 2.7e-34 149.1 124 55.6
CsaV3_4G000430 Cucumis sativus L. HOM05D005641 ORTHO05D007953 2.7e-34 149.1 116 54.3
Phvul.002G052300 Phaseolus vulgaris HOM05D005641 ORTHO05D007953 2.7e-34 149.1 137 51.1
TPR.G8292 Trifolium pratense HOM05D005641 ORTHO05D007953 2.7e-34 149.1 136 49.3
TAR376G1148 Trochodendron aralioides HOM05D005641 ORTHO05D007953 2.7e-34 149.1 118 55.9
BcaC04g23064 Brassica carinata HOM05D005641 ORTHO05D007953 3.5e-34 148.7 132 52.3
BolC9t54144H Brassica oleracea HOM05D005641 ORTHO05D007953 3.5e-34 148.7 132 52.3
Gohir.D02G205400 Gossypium hirsutum HOM05D005641 ORTHO05D007953 3.5e-34 148.7 134 50.0
GSVIVG01037858001 Vitis vinifera HOM05D005641 ORTHO05D007953 3.5e-34 148.7 135 51.9
Carub.0003s2882 Capsella rubella HOM05D005641 ORTHO05D007953 4.5e-34 148.3 131 51.9
Ciclev10029502m.g Citrus clementina HOM05D005641 ORTHO05D007953 4.5e-34 148.3 138 50.7
Duzib052G0024 Durio zibethinus HOM05D005641 ORTHO05D007953 4.5e-34 148.3 125 52.0
FAN20G2714 Fragaria x ananassa HOM05D005641 ORTHO05D007953 4.5e-34 148.3 116 54.3
Potri.009G090100 Populus trichocarpa HOM05D005641 ORTHO05D007953 4.5e-34 148.3 139 48.2
Sc14g0002550 Simmondsia chinensis HOM05D005641 ORTHO05D007953 4.5e-34 148.3 125 50.4
Eucgr.G01263 Eucalyptus grandis HOM05D005641 ORTHO05D007953 5.9e-34 147.9 138 50.7
Gorai.005G232800 Gossypium raimondii HOM05D005641 ORTHO05D007953 5.9e-34 147.9 129 51.2
Os12g0508266 Oryza sativa ssp. japonica HOM05D005641 ORTHO05D007953 5.9e-34 147.9 126 51.6
Prupe.8G141700 Prunus persica HOM05D005641 ORTHO05D007953 5.9e-34 147.9 116 56.0
C09p12490 Brassica napus HOM05D005641 ORTHO05D007953 7.8e-34 147.5 132 52.3
BraA09t36698Z Brassica rapa HOM05D005641 ORTHO05D007953 7.8e-34 147.5 132 52.3
Sabra09G0069700 Salix brachista HOM05D005641 ORTHO05D007953 7.8e-34 147.5 118 53.4
AT2G14825 Arabidopsis thaliana HOM05D005641 ORTHO05D007953 1.0e-33 147.1 124 55.6
Thhalv10022899m.g Eutrema salsugineum HOM05D005641 ORTHO05D007953 1.3e-33 146.7 132 52.3
Migut.O00678 Erythranthe guttata HOM05D005641 ORTHO05D007953 1.7e-33 146.4 118 53.4
THA.LOC104819534 Tarenaya hassleriana HOM05D005641 ORTHO05D007953 1.7e-33 146.4 126 53.2
Cpa.g.sc106.73 Carica papaya HOM05D005641 ORTHO05D007953 2.3e-33 146.0 119 52.1
Migut.N01150 Erythranthe guttata HOM05D005641 ORTHO05D007953 2.3e-33 146.0 118 53.4
PGR042G3728 Punica granatum HOM05D005641 ORTHO05D007953 2.3e-33 146.0 128 51.6
Eucgr.G01266 Eucalyptus grandis HOM05D005641 ORTHO05D007953 2.9e-33 145.6 115 52.2
MSTRG.5328 Avicennia marina HOM05D005641 ORTHO05D007953 3.8e-33 145.2 133 47.4
AL3G46570 Arabidopsis lyrata HOM05D005641 ORTHO05D007953 5.0e-33 144.8 124 54.8
CANSAT25G1977 Cannabis sativa HOM05D005641 ORTHO05D007953 6.6e-33 144.4 118 51.7
CDE06G0500 Ceratophyllum demersum HOM05D005641 ORTHO05D007953 6.6e-33 144.4 133 49.6
Rhsim05G0090100 Rhododendron simsii HOM05D005641 ORTHO05D007953 6.6e-33 144.4 144 50.0
Atru.chr5.2402 Acer truncatum HOM05D005641 ORTHO05D007953 8.6e-33 144.1 138 48.6
Manes.10G080400 Manihot esculenta HOM05D005641 ORTHO05D007953 8.6e-33 144.1 138 48.6
A09p10560 Brassica napus HOM05D005641 ORTHO05D007953 1.1e-32 143.7 132 51.5
Lsat_1_v5_gn_9_112460 Lactuca sativa HOM05D005641 ORTHO05D007953 1.1e-32 143.7 128 50.0
Gohir.A03G183900 Gossypium hirsutum HOM05D005641 ORTHO05D007953 1.5e-32 143.3 134 47.8
TWI14G0306 Tripterygium wilfordii HOM05D005641 ORTHO05D007953 1.9e-32 142.9 116 54.3
Cc02_g19690 Coffea canephora HOM05D005641 ORTHO05D007953 2.5e-32 142.5 119 52.9
FAN27G3103 Fragaria x ananassa HOM05D005641 ORTHO05D007953 2.5e-32 142.5 116 51.7
CSS0033790 Camellia sinensis var. sinensis HOM05D005641 ORTHO05D007953 3.3e-32 142.1 122 52.5
PGSC0003DMG400005454 Solanum tuberosum HOM05D005641 ORTHO05D007953 3.3e-32 142.1 118 52.5
ECA240G0483 Erigeron canadensis HOM05D005641 ORTHO05D007953 5.6e-32 141.4 131 49.6
Sopen10g020870 Solanum pennellii HOM05D005641 ORTHO05D007953 5.6e-32 141.4 136 50.0
Zm00001eb137960 Zea mays HOM05D005641 ORTHO05D007953 7.3e-32 141.0 125 49.6
arahy.Tifrunner.gnm1.ann1.GRNJ5W Arachis hypogaea HOM05D005641 ORTHO05D007953 9.5e-32 140.6 121 51.2
Ah.09g231980 Amaranthus hybridus HOM05D005641 ORTHO05D007953 1.2e-31 140.2 114 52.6
Solyc10g049650.3 Solanum lycopersicum HOM05D005641 ORTHO05D007953 1.2e-31 140.2 118 52.5
HanXRQChr03g0069981 Helianthus annuus HOM05D005641 ORTHO05D007953 1.6e-31 139.8 124 51.6
CSS0039741 Camellia sinensis var. sinensis HOM05D005641 ORTHO05D007953 2.1e-31 139.4 122 52.5
CBR_g32245 Chara braunii HOM05D005641 ORTHO05D007953 2.1e-31 139.4 117 48.7
Nitab4.5_0012285g0030 Nicotiana tabacum HOM05D005641 ORTHO05D007953 2.8e-31 139.0 135 47.4
vmacro19527 Vaccinium macrocarpon HOM05D005641 ORTHO05D007953 6.1e-31 137.9 136 50.0
EL10Ac8g19366 Beta vulgaris HOM05D005641 ORTHO05D007953 1.8e-30 136.3 114 52.6
CAN.G1.68 Capsicum annuum HOM05D005641 ORTHO05D007953 2.3e-30 136.0 118 50.0
Nitab4.5_0001259g0120 Nicotiana tabacum HOM05D005641 ORTHO05D007953 3.0e-30 135.6 133 47.4
AUR62022504 Chenopodium quinoa HOM05D005641 ORTHO05D007953 4.0e-30 135.2 114 52.6
Ciclev10028542m.g Citrus clementina HOM05D005641 ORTHO05D007953 5.2e-30 134.8 117 49.6
AUR62031337 Chenopodium quinoa HOM05D005641 ORTHO05D007953 8.9e-30 134.0 137 48.9
Glyma.01G243000 Glycine max HOM05D005641 ORTHO05D007953 8.9e-30 134.0 135 48.9
HPP92_020459 Vanilla planifolia HOM05D005641 ORTHO05D007953 8.9e-30 134.0 131 47.3
QL02p069415 Quercus lobata HOM05D000030 ORTHO05D000009 2.0e-29 132.9 107 51.4
Peaxi162Scf00083g00163 Petunia axillaris HOM05D005641 ORTHO05D007953 4.4e-29 131.7 115 48.7
Hund12610 Selenicereus undatus HOM05D005641 ORTHO05D007953 5.8e-29 131.3 126 49.2
HPP92_026175 Vanilla planifolia HOM05D005641 ORTHO05D007953 1.3e-28 130.2 131 46.6
VMungo1215G0158 Vigna mungo HOM05D005641 ORTHO05D007953 2.9e-28 129.0 150 41.3
Ca_24352_v3 Cicer arietinum L. HOM05D005641 ORTHO05D007953 1.1e-27 127.1 88 60.2
SalBow3G4250 Salvia bowleyana HOM05D005641 ORTHO05D007953 1.7e-25 119.8 83 57.8
Actinidia27984 Actinidia chinensis HOM05D005641 ORTHO05D007953 1.1e-24 117.1 119 47.9
Hma1.2p1_1023F.1_g248890 Hydrangea macrophylla HOM05D005641 ORTHO05D007953 1.4e-22 110.2 117 46.2
Hma1.2p1_1023F.1_g248900 Hydrangea macrophylla HOM05D005641 ORTHO05D007953 8.9e-22 107.5 74 59.5
arahy.Tifrunner.gnm1.ann1.C5GEYC Arachis hypogaea HOM05D005641 ORTHO05D007953 1.1e-19 100.5 120 41.7
RcHm_v2.0_Chr6g0253401 Rosa chinensis HOM05D005641 ORTHO05D035713 1.9e-19 99.8 90 47.8
FvH4_2g04050 Fragaria vesca HOM05D005641 ORTHO05D035713 1.6e-18 96.7 90 46.7
Psat4g227920 Pisum sativum HOM05D005641 ORTHO05D007953 1.0e-17 94.0 73 53.4
RcHm_v2.0_Chr6g0253251 Rosa chinensis HOM05D005641 ORTHO05D007953 2.3e-17 92.8 87 41.4
Prupe.8G141500 Prunus persica HOM05D005641 ORTHO05D007953 6.8e-14 81.3 77 39.0
Lj9A326T79 Lonicera japonica HOM05D005641 ORTHO05D007953 4.4e-13 78.6 94 40.4
Lj9A326T80 Lonicera japonica HOM05D005641 ORTHO05D007953 5.8e-13 78.2 62 54.8
RcHm_v2.0_Chr6g0253371 Rosa chinensis HOM05D001615 ORTHO05D001493 4.9e-12 75.1 73 43.8
RcHm_v2.0_Chr6g0253261 Rosa chinensis HOM05D005641 ORTHO05D007953 4.6e-10 68.6 75 38.7
ClCG10G010510 Citrullus lanatus HOM05D005641 ORTHO05D007953 1.1e-08 63.9 60 50.0
Lalb_Chr16g0376281 Lupinus albus HOM05D005641 ORTHO05D007953 5.6e-08 61.6 56 46.4
Cfa004644 Carpinus fangiana HOM05D005641 ORTHO05D002074 1.1e-06 57.4 35 60.0
arahy.Tifrunner.gnm1.ann1.50IW82 Arachis hypogaea HOM05D002499 ORTHO05D002812 1.8e-06 56.6 95 28.4
arahy.Tifrunner.gnm1.ann1.PLPE7Z Arachis hypogaea HOM05D002499 ORTHO05D002812 1.8e-06 56.6 95 28.4
Zm00001eb234370 Zea mays HOM05D002499 ORTHO05D002812 1.8e-06 56.6 95 28.4
Nitab4.5_0003335g0050 Nicotiana tabacum HOM05D002499 ORTHO05D002812 3.1e-06 55.8 95 28.4
Peaxi162Scf00003g02633 Petunia axillaris HOM05D005641 ORTHO05D007953 3.1e-06 55.8 62 41.9
Migut.D01091 Erythranthe guttata HOM05D002499 ORTHO05D002812 5.2e-06 55.1 95 27.4
Sc18g0000430 Simmondsia chinensis HOM05D002499 ORTHO05D002812 5.2e-06 55.1 90 32.2
TAR625G0939 Trochodendron aralioides HOM05D002499 ORTHO05D002812 5.2e-06 55.1 95 28.4
arahy.Tifrunner.gnm1.ann1.K6DZ42 Arachis hypogaea HOM05D002499 ORTHO05D002812 6.8e-06 54.7 95 27.4
CAN.G438.90 Capsicum annuum HOM05D002499 ORTHO05D002812 6.8e-06 54.7 95 29.5
CiPaw.01G251600 Carya illinoinensis HOM05D002499 ORTHO05D002812 6.8e-06 54.7 95 28.4
HPP92_005343 Vanilla planifolia HOM05D002499 ORTHO05D002812 6.8e-06 54.7 95 28.4
Zm00001eb264710 Zea mays HOM05D005641 ORTHO05D007953 6.8e-06 54.7 37 59.5
ECA246G0812 Erigeron canadensis HOM05D002499 ORTHO05D002812 8.9e-06 54.3 95 27.4
Nn2g12223 Nelumbo nucifera HOM05D002499 ORTHO05D002812 8.9e-06 54.3 95 28.4
Peaxi162Scf00023g01330 Petunia axillaris HOM05D002499 ORTHO05D002812 8.9e-06 54.3 95 27.4
SMO356G0707 Selaginella moellendorffii HOM05D002499 ORTHO05D002812 8.9e-06 54.3 73 30.1
Solyc03g120000.3 Solanum lycopersicum HOM05D002499 ORTHO05D002812 8.9e-06 54.3 95 28.4
Sopen03g038880 Solanum pennellii HOM05D002499 ORTHO05D002812 8.9e-06 54.3 95 28.4
PGSC0003DMG400005610 Solanum tuberosum HOM05D002499 ORTHO05D002812 8.9e-06 54.3 95 28.4
vmacro16869 Vaccinium macrocarpon HOM05D002499 ORTHO05D002812 8.9e-06 54.3 95 28.4
vmacro17297 Vaccinium macrocarpon HOM05D002499 ORTHO05D002812 8.9e-06 54.3 95 28.4


User provided reference genes

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