Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c6_17560 Physcomitrium patens HOM05D022548 ORTHO05D006204 0.0e+00 1508.0 826 100.0
Pp3c27_170 Physcomitrium patens HOM05D022548 ORTHO05D006204 2.2e-112 411.0 849 40.8
Pp3c16_8370 Physcomitrium patens HOM05D022548 ORTHO05D006204 7.2e-108 396.0 858 43.4
Pp3c9_7900 Physcomitrium patens HOM05D000276 ORTHO05D006204 1.0e-85 322.4 848 36.1
Pp3c15_4070 Physcomitrium patens HOM05D022548 ORTHO05D006204 1.6e-59 235.3 837 31.9
SEGI_36040 Sequoiadendron giganteum HOM05D000276 ORTHO05D006204 1.8e-26 125.6 512 28.7
EL10Ac7g16493 Beta vulgaris HOM05D000276 ORTHO05D006204 4.3e-20 104.4 205 38.5
unitig_749.g14034 Utricularia gibba HOM05D000276 ORTHO05D006204 5.3e-18 97.4 211 35.1
CiPaw.01G211700 Carya illinoinensis HOM05D000276 ORTHO05D006204 4.5e-17 94.4 223 34.1
AUR62025617 Chenopodium quinoa HOM05D000276 ORTHO05D006204 1.0e-16 93.2 232 32.8
ClCG07G014300 Citrullus lanatus HOM05D000276 ORTHO05D006204 1.0e-16 93.2 207 35.7
Aqoxy7G04179 Aquilegia oxysepala HOM05D000276 ORTHO05D006204 2.2e-16 92.0 479 25.5
CAN.G790.61 Capsicum annuum HOM05D000276 ORTHO05D006204 2.9e-16 91.7 482 27.0
Lj5A30G67 Lonicera japonica HOM05D000276 ORTHO05D006204 2.9e-16 91.7 207 35.3
Hund18639 Selenicereus undatus HOM05D000276 ORTHO05D006204 3.8e-16 91.3 228 33.3
Pp3c16_19900 Physcomitrium patens HOM05D022548 ORTHO05D006204 5.0e-16 90.9 326 30.4
CDE05G1253 Ceratophyllum demersum HOM05D002431 ORTHO05D002543 6.5e-16 90.5 240 40.4
DCAR_030330 Daucus carota HOM05D002431 ORTHO05D002543 6.5e-16 90.5 258 35.7
Psat7g086280 Pisum sativum HOM05D002431 ORTHO05D002543 6.5e-16 90.5 453 30.2
Aqoxy4G00012 Aquilegia oxysepala HOM05D000276 ORTHO05D006204 8.5e-16 90.1 256 30.9
AUR62001408 Chenopodium quinoa HOM05D000276 ORTHO05D006204 1.9e-15 89.0 232 33.2
Cc04_g00750 Coffea canephora HOM05D000276 ORTHO05D006204 1.9e-15 89.0 265 32.5
MELO3C022698.2 Cucumis melo HOM05D000276 ORTHO05D006204 1.9e-15 89.0 207 33.8
Oeu059014.1 Olea europaea HOM05D000276 ORTHO05D006204 2.5e-15 88.6 224 33.0
AagrBONN_evm.TU.Sc2ySwM_117.2369 Anthoceros agrestis HOM05D000276 ORTHO05D006204 3.2e-15 88.2 288 33.0
THA.LOC104824101 Tarenaya hassleriana HOM05D002431 ORTHO05D002543 3.2e-15 88.2 234 41.5
PGR119G2259 Punica granatum HOM05D000276 ORTHO05D006204 4.2e-15 87.8 223 33.6
Sabra01G0129700 Salix brachista HOM05D000276 ORTHO05D006204 4.2e-15 87.8 209 34.4
CDE05G0828 Ceratophyllum demersum HOM05D002431 ORTHO05D002543 9.4e-15 86.7 240 41.7
TWI77G0990 Tripterygium wilfordii HOM05D002431 ORTHO05D002543 9.4e-15 86.7 257 40.1
SalBow6G5970 Salvia bowleyana HOM05D000276 ORTHO05D006204 1.6e-14 85.9 207 34.8
TPR.G34762 Trifolium pratense HOM05D002431 ORTHO05D002543 2.1e-14 85.5 451 31.0
PGSC0003DMG400009148 Solanum tuberosum HOM05D000276 ORTHO05D006204 3.6e-14 84.7 217 33.2
Peaxi162Scf00038g02240 Petunia axillaris HOM05D000276 ORTHO05D006204 4.7e-14 84.3 219 33.8
Sed0017728 Sechium edule HOM05D000276 ORTHO05D006204 4.7e-14 84.3 205 33.2
Atru.chr11.1045 Acer truncatum HOM05D002431 ORTHO05D002543 6.1e-14 84.0 488 29.7
CiPaw.02G131200 Carya illinoinensis HOM05D000276 ORTHO05D006204 6.1e-14 84.0 205 34.1
Phvul.009G261800 Phaseolus vulgaris HOM05D000276 ORTHO05D006204 1.0e-13 83.2 224 31.7
MSTRG.10914 Avicennia marina HOM05D000276 ORTHO05D006204 2.3e-13 82.0 257 31.1
ECA234G3069 Erigeron canadensis HOM05D000276 ORTHO05D006204 3.9e-13 81.3 205 33.7
MSTRG.22517 Avicennia marina HOM05D000276 ORTHO05D006204 5.1e-13 80.9 222 29.7
Phvul.010G123300 Phaseolus vulgaris HOM05D000276 ORTHO05D006204 5.1e-13 80.9 204 33.8
RcHm_v2.0_Chr2g0147831 Rosa chinensis HOM05D000276 ORTHO05D006204 5.1e-13 80.9 210 32.9
ClCG11G000810 Citrullus lanatus HOM05D002431 ORTHO05D002543 6.7e-13 80.5 486 24.7
CiPaw.05G163000 Carya illinoinensis HOM05D002431 ORTHO05D002543 8.8e-13 80.1 455 29.7
Solyc03g123590.4 Solanum lycopersicum HOM05D000276 ORTHO05D006204 1.1e-12 79.7 217 31.8
Sopen03g041360 Solanum pennellii HOM05D000276 ORTHO05D006204 1.1e-12 79.7 204 31.9
Os11g0616300 Oryza sativa ssp. japonica HOM05D000276 ORTHO05D006204 1.5e-12 79.3 225 32.0
Pp3c14_21250 Physcomitrium patens HOM05D002431 ORTHO05D002543 1.5e-12 79.3 398 27.1
Potri.010G098000 Populus trichocarpa HOM05D002431 ORTHO05D002543 1.5e-12 79.3 483 29.0
Sed0020238 Sechium edule HOM05D000276 ORTHO05D006204 2.0e-12 79.0 206 33.0
VMungo0331G0415 Vigna mungo HOM05D000276 ORTHO05D006204 2.0e-12 79.0 204 33.3
VMungo1309G2546 Vigna mungo HOM05D000276 ORTHO05D006204 2.6e-12 78.6 228 30.7
Glyma.16G013800 Glycine max HOM05D000276 ORTHO05D006204 3.3e-12 78.2 206 33.5
Glyma.08G090800 Glycine max HOM05D002431 ORTHO05D002543 5.7e-12 77.4 454 30.4
Lsat_1_v5_gn_1_39200 Lactuca sativa HOM05D000276 ORTHO05D006204 5.7e-12 77.4 223 35.9
Nn6g35726 Nelumbo nucifera HOM05D000276 ORTHO05D006204 5.7e-12 77.4 210 40.0
Rhsim08G0244500 Rhododendron simsii HOM05D000276 ORTHO05D006204 5.7e-12 77.4 211 37.4
Lsat_1_v5_gn_4_92260 Lactuca sativa HOM05D000276 ORTHO05D006204 7.4e-12 77.0 204 33.8
Sed0013249 Sechium edule HOM05D002431 ORTHO05D002543 7.4e-12 77.0 486 29.0
SEGI_21805 Sequoiadendron giganteum HOM05D002431 ORTHO05D002543 7.4e-12 77.0 473 28.5
SHI25222 Sapria himalayana HOM05D000276 ORTHO05D006204 9.7e-12 76.6 201 34.3
QL03p041928 Quercus lobata HOM05D002431 ORTHO05D002543 1.3e-11 76.3 274 35.0
CsaV3_3G031000 Cucumis sativus L. HOM05D000276 ORTHO05D006204 1.7e-11 75.9 138 39.9
Lalb_Chr07g0188081 Lupinus albus HOM05D002431 ORTHO05D002543 1.7e-11 75.9 263 38.8
CsaV3_5G012590 Cucumis sativus L. HOM05D002431 ORTHO05D002543 2.2e-11 75.5 486 28.2
CsaV3_5G012800 Cucumis sativus L. HOM05D002431 ORTHO05D002543 2.2e-11 75.5 486 28.2
FvH4_6g35790 Fragaria vesca HOM05D000276 ORTHO05D006204 2.2e-11 75.5 210 34.8
FAN14G2098 Fragaria x ananassa HOM05D000276 ORTHO05D006204 2.2e-11 75.5 210 34.8
FAN14G4808 Fragaria x ananassa HOM05D000276 ORTHO05D006204 2.2e-11 75.5 210 34.8
Lalb_Chr12g0209221 Lupinus albus HOM05D002431 ORTHO05D002543 2.2e-11 75.5 265 37.7
Manes.10G068300 Manihot esculenta HOM05D002431 ORTHO05D002543 2.2e-11 75.5 452 29.4
CANSAT56G1386 Cannabis sativa HOM05D000276 ORTHO05D006204 2.8e-11 75.1 224 31.2
FAN09G0859 Fragaria x ananassa HOM05D000276 ORTHO05D006204 2.8e-11 75.1 210 34.8
Rhsim09G0075000 Rhododendron simsii HOM05D002431 ORTHO05D002543 2.8e-11 75.1 445 32.1
Nitab4.5_0008337g0030 Nicotiana tabacum HOM05D000276 ORTHO05D006204 3.7e-11 74.7 136 40.4
Nitab4.5_0010687g0030 Nicotiana tabacum HOM05D000276 ORTHO05D006204 3.7e-11 74.7 310 29.4
VMungo0251G0662 Vigna mungo HOM05D002431 ORTHO05D002543 3.7e-11 74.7 396 32.1
Lj4g0002360 Lotus japonicus HOM05D002431 ORTHO05D002543 6.3e-11 73.9 454 29.5
vmacro15085 Vaccinium macrocarpon HOM05D000276 ORTHO05D006204 6.3e-11 73.9 210 37.6
vmacro18765 Vaccinium macrocarpon HOM05D000276 ORTHO05D006204 6.3e-11 73.9 210 37.6
MD17G1154200 Malus domestica HOM05D000276 ORTHO05D006204 8.2e-11 73.6 204 31.4
TWI59G1360 Tripterygium wilfordii HOM05D000276 ORTHO05D006204 8.2e-11 73.6 136 38.2
FAN05G4018 Fragaria x ananassa HOM05D000276 ORTHO05D006204 1.1e-10 73.2 241 30.7
Potri.001G163000 Populus trichocarpa HOM05D000276 ORTHO05D006204 1.4e-10 72.8 209 32.1
Atru.chr1.4144 Acer truncatum HOM05D000276 ORTHO05D006204 2.4e-10 72.0 191 35.6
Actinidia24430 Actinidia chinensis HOM05D000276 ORTHO05D003951 2.4e-10 72.0 211 30.3
Lj9C538T3 Lonicera japonica HOM05D000276 ORTHO05D006204 2.4e-10 72.0 219 33.3
TAR383G0418 Trochodendron aralioides HOM05D000276 ORTHO05D006204 2.4e-10 72.0 334 26.6
Glyma.07G045800 Glycine max HOM05D000276 ORTHO05D006204 3.1e-10 71.6 135 41.5
Lsat_1_v5_gn_4_26141 Lactuca sativa HOM05D002431 ORTHO05D002543 3.1e-10 71.6 255 36.9
Migut.E00242 Erythranthe guttata HOM05D005632 ORTHO05D006870 4.1e-10 71.2 220 32.7
PSO724G0674 Papaver somniferum HOM05D000276 ORTHO05D006204 4.1e-10 71.2 209 29.2
Eucgr.J01777 Eucalyptus grandis HOM05D002431 ORTHO05D002543 5.3e-10 70.9 455 30.5
AUR62017841 Chenopodium quinoa HOM05D002431 ORTHO05D002543 7.0e-10 70.5 291 34.4
Ca_18210_v3 Cicer arietinum L. HOM05D002431 ORTHO05D002543 7.0e-10 70.5 408 31.1
CDE03G0116 Ceratophyllum demersum HOM05D000276 ORTHO05D006204 9.1e-10 70.1 210 33.3
Eucgr.I02162 Eucalyptus grandis HOM05D000276 ORTHO05D006204 9.1e-10 70.1 146 38.4
PSO135G0530 Papaver somniferum HOM05D000276 ORTHO05D006204 9.1e-10 70.1 316 25.0
Phvul.002G186400 Phaseolus vulgaris HOM05D002431 ORTHO05D002543 9.1e-10 70.1 396 31.1
Potri.008G144300 Populus trichocarpa HOM05D002431 ORTHO05D002543 9.1e-10 70.1 154 46.8
Dinv28152 Davidia involucrata HOM05D002431 ORTHO05D002543 1.2e-09 69.7 241 36.9
Rhsim12G0213200 Rhododendron simsii HOM05D000276 ORTHO05D003951 1.6e-09 69.3 210 32.4
HanXRQChr10g0312011 Helianthus annuus HOM05D000276 ORTHO05D006204 2.0e-09 68.9 199 32.7
Cc11_g03240 Coffea canephora HOM05D002431 ORTHO05D002543 2.6e-09 68.6 157 41.4
Prupe.1G342800 Prunus persica HOM05D002431 ORTHO05D002543 2.6e-09 68.6 444 30.2
SEGI_29969 Sequoiadendron giganteum HOM05D002431 ORTHO05D002543 2.6e-09 68.6 392 26.8
EL10Ac8g19626 Beta vulgaris HOM05D002431 ORTHO05D002543 3.5e-09 68.2 239 38.1
ECA247G2873 Erigeron canadensis HOM05D000276 ORTHO05D006204 4.5e-09 67.8 147 39.5
MBI19_g32870_MAGBIO Magnolia biondii HOM05D000276 ORTHO05D006204 4.5e-09 67.8 234 31.6
Lalb_Chr17g0343241 Lupinus albus HOM05D000276 ORTHO05D006204 5.9e-09 67.4 225 29.3
Mapoly0109s0057 Marchantia polymorpha HOM05D002431 ORTHO05D002543 5.9e-09 67.4 394 28.2
CDE06G0894 Ceratophyllum demersum HOM05D000276 ORTHO05D006204 1.3e-08 66.2 221 32.1
COL.COLO4_30861 Corchorus olitorius HOM05D000276 ORTHO05D006204 1.3e-08 66.2 207 30.0
ATR0618G051 Amborella trichopoda HOM05D002431 ORTHO05D002543 1.7e-08 65.9 462 28.6
BcaB07g33286 Brassica carinata HOM05D000276 ORTHO05D006204 1.7e-08 65.9 213 31.5
Phvul.002G177800 Phaseolus vulgaris HOM05D002431 ORTHO05D002543 1.7e-08 65.9 268 33.2
Thecc.06G129800 Theobroma cacao HOM05D000276 ORTHO05D006204 2.9e-08 65.1 216 29.2
TAR627G0788 Trochodendron aralioides HOM05D002431 ORTHO05D002543 2.9e-08 65.1 270 30.0
Migut.I01129 Erythranthe guttata HOM05D000276 ORTHO05D006204 5.0e-08 64.3 259 39.0
Gohir.D01G138400 Gossypium hirsutum HOM05D002431 ORTHO05D002543 5.0e-08 64.3 277 33.9
Sabra08G0109300 Salix brachista HOM05D002431 ORTHO05D002543 5.0e-08 64.3 156 44.2
BcaC08g43563 Brassica carinata HOM05D000276 ORTHO05D003951 6.5e-08 63.9 213 31.5
C06p09620 Brassica napus HOM05D000276 ORTHO05D003951 6.5e-08 63.9 213 31.5
BolC6t36034H Brassica oleracea HOM05D000276 ORTHO05D003951 6.5e-08 63.9 213 31.5
MELO3C022596.2 Cucumis melo HOM05D002431 ORTHO05D002543 6.5e-08 63.9 474 27.4
Glyma.05G145700 Glycine max HOM05D005632 ORTHO05D006870 6.5e-08 63.9 222 32.0
Peaxi162Scf00128g00929 Petunia axillaris HOM05D005632 ORTHO05D006870 8.5e-08 63.5 337 26.1
Potri.010G056800 Populus trichocarpa HOM05D005632 ORTHO05D006870 1.1e-07 63.2 223 37.7
GSVIVG01016672001 Vitis vinifera HOM05D000276 ORTHO05D006204 1.1e-07 63.2 207 38.6
Ah.02g120700 Amaranthus hybridus HOM05D002431 ORTHO05D002543 1.5e-07 62.8 463 27.6
Nn3g18710 Nelumbo nucifera HOM05D002431 ORTHO05D002543 1.5e-07 62.8 375 31.2
A06p00740 Brassica napus HOM05D000276 ORTHO05D003951 1.9e-07 62.4 213 31.0
CARHR044190 Cardamine hirsuta HOM05D000276 ORTHO05D006204 1.9e-07 62.4 213 29.6
QL05p001260 Quercus lobata HOM05D000276 ORTHO05D006204 1.9e-07 62.4 464 24.1
Actinidia32345 Actinidia chinensis HOM05D002431 ORTHO05D002543 2.5e-07 62.0 286 32.5
AUR62005576 Chenopodium quinoa HOM05D005632 ORTHO05D006870 2.5e-07 62.0 222 34.7
Dinv37820 Davidia involucrata HOM05D000276 ORTHO05D006204 2.5e-07 62.0 207 31.9
CDE04G0609 Ceratophyllum demersum HOM05D002431 ORTHO05D002543 3.2e-07 61.6 161 35.4
Ciclev10025517m.g Citrus clementina HOM05D000276 ORTHO05D006204 3.2e-07 61.6 438 24.0
COL.COLO4_16621 Corchorus olitorius HOM05D002431 ORTHO05D002543 3.2e-07 61.6 275 34.9
Gohir.A01G145800 Gossypium hirsutum HOM05D002431 ORTHO05D002543 3.2e-07 61.6 158 43.7
BraA06t23308Z Brassica rapa HOM05D000276 ORTHO05D003951 4.2e-07 61.2 213 30.5
MBI08_g36441_MAGBIO Magnolia biondii HOM05D005632 ORTHO05D006870 4.2e-07 61.2 257 29.6
AUR62002679 Chenopodium quinoa HOM05D002431 ORTHO05D002543 5.5e-07 60.8 269 36.8
Duzib248G0063 Durio zibethinus HOM05D002431 ORTHO05D002543 5.5e-07 60.8 289 34.9
Gorai.002G167500 Gossypium raimondii HOM05D002431 ORTHO05D002543 5.5e-07 60.8 277 33.6
AT1G53860 Arabidopsis thaliana HOM05D000276 ORTHO05D006204 7.2e-07 60.5 212 28.3
CSS0004223 Camellia sinensis var. sinensis HOM05D002431 ORTHO05D002543 7.2e-07 60.5 235 36.6
GSVIVG01010242001 Vitis vinifera HOM05D002431 ORTHO05D002543 7.2e-07 60.5 226 33.2
arahy.Tifrunner.gnm1.ann1.X1RNA0 Arachis hypogaea HOM05D002431 ORTHO05D002543 9.4e-07 60.1 270 33.3
MSTRG.522 Avicennia marina HOM05D005632 ORTHO05D006870 9.4e-07 60.1 221 35.3
MBI13_g01693_MAGBIO Magnolia biondii HOM05D000276 ORTHO05D006204 9.4e-07 60.1 223 30.0
QL03p054693 Quercus lobata HOM05D005632 ORTHO05D006870 9.4e-07 60.1 220 30.0
Actinidia39591 Actinidia chinensis HOM05D002431 ORTHO05D002543 1.2e-06 59.7 509 26.5
Cfa003463 Carpinus fangiana HOM05D000276 ORTHO05D006204 1.2e-06 59.7 204 28.4
Carub.0001s4314 Capsella rubella HOM05D000276 ORTHO05D006204 1.6e-06 59.3 217 28.1
Carub.0005s0124 Capsella rubella HOM05D002431 ORTHO05D002543 1.6e-06 59.3 362 27.1
Thhalv10004200m.g Eutrema salsugineum HOM05D002431 ORTHO05D002543 1.6e-06 59.3 361 25.8
Lj4g0009016 Lotus japonicus HOM05D005632 ORTHO05D006870 1.6e-06 59.3 222 32.9
Sc15g0000800 Simmondsia chinensis HOM05D000276 ORTHO05D006204 1.6e-06 59.3 202 41.1
AT2G02170 Arabidopsis thaliana HOM05D002431 ORTHO05D002543 2.1e-06 58.9 187 32.1
BcaB02g10881 Brassica carinata HOM05D000276 ORTHO05D006204 2.1e-06 58.9 213 29.6
Lalb_Chr07g0187481 Lupinus albus HOM05D002431 ORTHO05D002543 2.1e-06 58.9 234 34.6
SGA_v2.0_scaffold5371G54636 Striga asiatica HOM05D000276 ORTHO05D006204 2.1e-06 58.9 131 38.9
AL1G62570 Arabidopsis lyrata HOM05D000276 ORTHO05D006204 2.7e-06 58.5 217 26.3
EL10Ac6g15353 Beta vulgaris HOM05D002431 ORTHO05D002543 2.7e-06 58.5 192 28.1
CSS0023204 Camellia sinensis var. sinensis HOM05D002431 ORTHO05D002543 2.7e-06 58.5 234 37.2
Hma1.2p1_1340F.1_g276780 Hydrangea macrophylla HOM05D005632 ORTHO05D006870 2.7e-06 58.5 224 37.5
Gorai.011G055400 Gossypium raimondii HOM05D000276 ORTHO05D006204 3.6e-06 58.2 204 30.9
RcHm_v2.0_Chr4g0446081 Rosa chinensis HOM05D002431 ORTHO05D002543 3.6e-06 58.2 451 29.9
Zm00001eb209450 Zea mays HOM05D002431 ORTHO05D002543 3.6e-06 58.2 381 24.9
AL5G11450 Arabidopsis lyrata HOM05D002431 ORTHO05D002543 4.7e-06 57.8 187 31.6
arahy.Tifrunner.gnm1.ann1.H5LZNT Arachis hypogaea HOM05D002431 ORTHO05D002543 4.7e-06 57.8 262 33.6
arahy.Tifrunner.gnm1.ann1.PUF5Z4 Arachis hypogaea HOM05D002431 ORTHO05D002543 4.7e-06 57.8 262 33.6
EL10Ac6g13443 Beta vulgaris HOM05D005632 ORTHO05D006870 4.7e-06 57.8 371 32.6
BcaC06g34069 Brassica carinata HOM05D002431 ORTHO05D002543 4.7e-06 57.8 158 34.2
BolC7t43817H Brassica oleracea HOM05D002431 ORTHO05D002543 4.7e-06 57.8 158 34.2
AUR62003527 Chenopodium quinoa HOM05D002431 ORTHO05D002543 4.7e-06 57.8 363 25.3
Lsat_1_v5_gn_5_137881 Lactuca sativa HOM05D000276 ORTHO05D006204 4.7e-06 57.8 223 28.7
Rhsim12G0029700 Rhododendron simsii HOM05D005632 ORTHO05D006870 6.1e-06 57.4 281 34.5
HPP92_026318 Vanilla planifolia HOM05D000276 ORTHO05D006204 6.1e-06 57.4 169 29.0
Gohir.D10G051900 Gossypium hirsutum HOM05D000276 ORTHO05D006204 8.0e-06 57.0 204 29.9


User provided reference genes

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