Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c6_17270 Physcomitrium patens HOM05D003349 ORTHO05D003898 0.0e+00 1686.4 864 100.0
Pp3c5_7300 Physcomitrium patens HOM05D003349 ORTHO05D003898 3.0e-258 895.6 877 58.0
Mapoly0001s0286 Marchantia polymorpha HOM05D003349 ORTHO05D003898 4.2e-66 257.3 950 29.1
Pp3c3_27710 Physcomitrium patens HOM05D003349 ORTHO05D003898 9.7e-47 193.0 969 26.8
Pp3c22_2440 Physcomitrium patens HOM05D003349 ORTHO05D003898 8.5e-43 179.9 203 44.3
Pp3c19_3520 Physcomitrium patens HOM05D003349 ORTHO05D003898 1.2e-36 159.5 242 38.4
Pp3c19_3524 Physcomitrium patens HOM05D003349 ORTHO05D003898 1.2e-36 159.5 242 38.4
Pp3c18_19210 Physcomitrium patens HOM05D003349 ORTHO05D003898 2.2e-35 155.2 174 44.8
SMO116G0096 Selaginella moellendorffii HOM05D003118 ORTHO05D003898 9.4e-34 149.8 228 39.0
AagrBONN_evm.TU.Sc2ySwM_362.243 Anthoceros agrestis HOM05D003349 ORTHO05D003898 8.0e-33 146.7 218 43.6
SMO364G0157 Selaginella moellendorffii HOM05D003349 ORTHO05D003898 7.5e-31 140.2 203 40.9
AUR62032685 Chenopodium quinoa HOM05D003349 ORTHO05D003898 7.2e-26 123.6 370 29.5
Os11g0580000 Oryza sativa ssp. japonica HOM05D003349 ORTHO05D003898 2.1e-25 122.1 270 34.8
SEGI_12350 Sequoiadendron giganteum HOM05D003349 ORTHO05D003898 2.1e-25 122.1 290 35.5
HPP92_004178 Vanilla planifolia HOM05D003349 ORTHO05D003898 2.1e-25 122.1 205 35.1
CAN.G317.13 Capsicum annuum HOM05D003349 ORTHO05D003898 3.6e-25 121.3 206 36.9
Aqoxy1G00500 Aquilegia oxysepala HOM05D003349 ORTHO05D003898 4.7e-25 120.9 298 29.9
Cc06_g22870 Coffea canephora HOM05D003349 ORTHO05D003898 4.7e-25 120.9 204 36.8
MELO3C008798.2 Cucumis melo HOM05D003349 ORTHO05D003898 6.1e-25 120.6 278 32.4
TAR636G3347 Trochodendron aralioides HOM05D003349 ORTHO05D003898 6.1e-25 120.6 262 32.1
Nn2g15886 Nelumbo nucifera HOM05D003349 ORTHO05D003898 8.0e-25 120.2 281 34.5
Hund19241 Selenicereus undatus HOM05D003349 ORTHO05D003898 1.0e-24 119.8 206 35.0
CsaV3_4G013310 Cucumis sativus L. HOM05D003349 ORTHO05D003898 1.4e-24 119.4 278 32.0
SEGI_09484 Sequoiadendron giganteum HOM05D003349 ORTHO05D003898 1.4e-24 119.4 263 32.3
SEGI_29772 Sequoiadendron giganteum HOM05D003349 ORTHO05D003898 1.4e-24 119.4 263 32.3
Oeu060005.1 Olea europaea HOM05D003349 ORTHO05D003898 1.8e-24 119.0 339 31.3
ATR0697G133 Amborella trichopoda HOM05D003349 ORTHO05D003898 2.3e-24 118.6 287 33.4
Sopen03g015010 Solanum pennellii HOM05D003349 ORTHO05D003898 2.3e-24 118.6 269 33.5
AUR62032062 Chenopodium quinoa HOM05D003349 ORTHO05D003898 3.0e-24 118.2 280 31.4
ClCG04G005280 Citrullus lanatus HOM05D003349 ORTHO05D003898 5.2e-24 117.5 278 31.7
SEGI_06046 Sequoiadendron giganteum HOM05D003349 ORTHO05D003898 5.2e-24 117.5 203 34.0
TAR633G2041 Trochodendron aralioides HOM05D003349 ORTHO05D003898 5.2e-24 117.5 271 31.4
Oeu012406.1 Olea europaea HOM05D003349 ORTHO05D003898 6.8e-24 117.1 263 33.5
PSO339G2750 Papaver somniferum HOM05D003349 ORTHO05D003898 6.8e-24 117.1 205 34.6
PSO384G0567 Papaver somniferum HOM05D003349 ORTHO05D003898 6.8e-24 117.1 205 34.6
Ciclev10019371m.g Citrus clementina HOM05D003349 ORTHO05D003898 8.9e-24 116.7 332 29.5
Nitab4.5_0000001g0070 Nicotiana tabacum HOM05D003349 ORTHO05D003898 1.2e-23 116.3 260 33.1
Hma1.2p1_0376F.1_g139170 Hydrangea macrophylla HOM05D003349 ORTHO05D003898 1.5e-23 115.9 288 32.6
Lj1A1137T83 Lonicera japonica HOM05D003349 ORTHO05D003898 1.5e-23 115.9 260 32.7
Manes.08G150100 Manihot esculenta HOM05D003349 ORTHO05D003898 1.5e-23 115.9 262 30.5
Nn7g35824 Nelumbo nucifera HOM05D003349 ORTHO05D003898 2.0e-23 115.5 285 30.9
Atru.chr2.1365 Acer truncatum HOM05D003349 ORTHO05D003898 3.4e-23 114.8 340 29.1
CDE06G0484 Ceratophyllum demersum HOM05D003349 ORTHO05D003898 3.4e-23 114.8 323 30.3
Nitab4.5_0002825g0010 Nicotiana tabacum HOM05D003349 ORTHO05D003898 3.4e-23 114.8 260 32.7
Solyc03g062700.4 Solanum lycopersicum HOM05D003349 ORTHO05D003898 3.4e-23 114.8 293 33.1
PGSC0003DMG400008643 Solanum tuberosum HOM05D003349 ORTHO05D003898 3.4e-23 114.8 293 32.8
Peaxi162Scf00076g01031 Petunia axillaris HOM05D003349 ORTHO05D003898 7.5e-23 113.6 271 32.5
PGR042G2987 Punica granatum HOM05D003349 ORTHO05D003898 7.5e-23 113.6 260 33.5
MD14G1002300 Malus domestica HOM05D003349 ORTHO05D003898 9.8e-23 113.2 278 32.7
CDE07G0844 Ceratophyllum demersum HOM05D003349 ORTHO05D003898 1.3e-22 112.8 332 28.9
Prupe.7G003500 Prunus persica HOM05D003349 ORTHO05D003898 1.3e-22 112.8 296 31.8
QL07p020065 Quercus lobata HOM05D003349 ORTHO05D003898 1.3e-22 112.8 259 31.7
arahy.Tifrunner.gnm1.ann1.CJ7Z8Q Arachis hypogaea HOM05D003349 ORTHO05D003898 1.7e-22 112.5 217 32.7
SalBow6G1268 Salvia bowleyana HOM05D003349 ORTHO05D003898 1.7e-22 112.5 258 31.4
arahy.Tifrunner.gnm1.ann1.L5U228 Arachis hypogaea HOM05D003349 ORTHO05D003898 2.2e-22 112.1 217 32.7
Carub.0002s0958 Capsella rubella HOM05D003349 ORTHO05D003898 2.2e-22 112.1 285 30.5
EL10Ac3g06814 Beta vulgaris HOM05D003349 ORTHO05D003898 3.7e-22 111.3 285 30.9
VMungo1383G1871 Vigna mungo HOM05D003349 ORTHO05D003898 3.7e-22 111.3 206 34.5
CANSAT78G1787 Cannabis sativa HOM05D003349 ORTHO05D003898 4.9e-22 110.9 300 32.0
Phvul.001G110000 Phaseolus vulgaris HOM05D003349 ORTHO05D003898 4.9e-22 110.9 214 33.6
TAR623G1645 Trochodendron aralioides HOM05D003349 ORTHO05D003898 4.9e-22 110.9 249 30.9
unitig_899.g15643 Utricularia gibba HOM05D003349 ORTHO05D003898 4.9e-22 110.9 214 34.1
Eucgr.A02093 Eucalyptus grandis HOM05D003349 ORTHO05D003898 6.3e-22 110.5 252 31.3
Manes.09G142100 Manihot esculenta HOM05D003349 ORTHO05D003898 6.3e-22 110.5 296 29.4
CiPaw.06G089600 Carya illinoinensis HOM05D003349 ORTHO05D003898 1.1e-21 109.8 264 31.8
Haze_19412 Corylus avellana HOM05D003349 ORTHO05D003898 1.1e-21 109.8 271 30.3
Sed0005648 Sechium edule HOM05D003349 ORTHO05D003898 1.1e-21 109.8 250 31.2
arahy.Tifrunner.gnm1.ann1.GFD0T8 Arachis hypogaea HOM05D003349 ORTHO05D003898 1.4e-21 109.4 219 32.4
arahy.Tifrunner.gnm1.ann1.N26BUN Arachis hypogaea HOM05D003349 ORTHO05D003898 1.4e-21 109.4 219 32.4
Gohir.D11G269200 Gossypium hirsutum HOM05D003349 ORTHO05D003898 1.4e-21 109.4 264 31.4
Phvul.004G079400 Phaseolus vulgaris HOM05D003349 ORTHO05D003898 1.4e-21 109.4 210 32.4
Sabra19G0041800 Salix brachista HOM05D003349 ORTHO05D003898 1.4e-21 109.4 292 30.1
GSVIVG01033391001 Vitis vinifera HOM05D003349 ORTHO05D003898 1.4e-21 109.4 260 33.1
Sed0027207 Sechium edule HOM05D003349 ORTHO05D003898 1.8e-21 109.0 253 30.8
Lj2g0007320 Lotus japonicus HOM05D003349 ORTHO05D003898 2.4e-21 108.6 219 32.0
TWI34G0012 Tripterygium wilfordii HOM05D003349 ORTHO05D003898 2.4e-21 108.6 289 28.7
Ca_25618_v3 Cicer arietinum L. HOM05D003349 ORTHO05D003898 3.1e-21 108.2 280 29.3
Gorai.007G289100 Gossypium raimondii HOM05D003349 ORTHO05D003898 4.1e-21 107.8 264 30.7
TAR369G0075 Trochodendron aralioides HOM05D003349 ORTHO05D003898 4.1e-21 107.8 272 30.5
Lj1g0027644 Lotus japonicus HOM05D003349 ORTHO05D003898 5.4e-21 107.5 206 33.5
TWI60G1263 Tripterygium wilfordii HOM05D003349 ORTHO05D003898 5.4e-21 107.5 287 29.3
AT1G54385 Arabidopsis thaliana HOM05D003349 ORTHO05D003898 7.0e-21 107.1 283 30.7
SGA_v2.0_scaffold24G10518 Striga asiatica HOM05D003349 ORTHO05D003898 7.0e-21 107.1 206 33.0
Ca_21768_v3 Cicer arietinum L. HOM05D003349 ORTHO05D003898 9.2e-21 106.7 303 27.4
Duzib128G1865 Durio zibethinus HOM05D003349 ORTHO05D003898 9.2e-21 106.7 264 31.1
Sc19g0006470 Simmondsia chinensis HOM05D003349 ORTHO05D003898 9.2e-21 106.7 270 31.5
THA.LOC104821510 Tarenaya hassleriana HOM05D003349 ORTHO05D003898 9.2e-21 106.7 281 29.2
Glyma.19G110600 Glycine max HOM05D003349 ORTHO05D003898 1.2e-20 106.3 263 29.3
Dinv37011 Davidia involucrata HOM05D003349 ORTHO05D003898 1.6e-20 105.9 285 32.6
CARHR055490 Cardamine hirsuta HOM05D003349 ORTHO05D003898 2.0e-20 105.5 273 29.7
Thhalv10028548m.g Eutrema salsugineum HOM05D003349 ORTHO05D003898 2.0e-20 105.5 324 29.6
FAN23G0882 Fragaria x ananassa HOM05D003349 ORTHO05D003898 2.0e-20 105.5 255 29.8
Lalb_Chr06g0173961 Lupinus albus HOM05D003349 ORTHO05D003898 2.0e-20 105.5 208 31.7
Sp6g02300 Schrenkiella parvula HOM05D003349 ORTHO05D003898 2.0e-20 105.5 327 29.4
COL.COLO4_13609 Corchorus olitorius HOM05D003349 ORTHO05D003898 2.7e-20 105.1 263 31.6
Migut.J01894 Erythranthe guttata HOM05D003349 ORTHO05D003898 2.7e-20 105.1 297 30.3
FvH4_1g28060 Fragaria vesca HOM05D003349 ORTHO05D003898 2.7e-20 105.1 256 29.7
FAN19G0867 Fragaria x ananassa HOM05D003349 ORTHO05D003898 2.7e-20 105.1 256 29.7
Thecc.05G293700 Theobroma cacao HOM05D003349 ORTHO05D003898 2.7e-20 105.1 298 29.2
Actinidia30557 Actinidia chinensis HOM05D003349 ORTHO05D003898 3.5e-20 104.8 285 31.2
CiPaw.09G001500 Carya illinoinensis HOM05D003349 ORTHO05D003898 3.5e-20 104.8 264 31.4
FAN26G3194 Fragaria x ananassa HOM05D003349 ORTHO05D003898 3.5e-20 104.8 256 29.7
Potri.019G033900 Populus trichocarpa HOM05D003349 ORTHO05D003898 3.5e-20 104.8 377 27.9
CSS0039180 Camellia sinensis var. sinensis HOM05D003349 ORTHO05D003898 4.5e-20 104.4 214 32.7
Zm00001eb200470 Zea mays HOM05D003349 ORTHO05D003898 5.9e-20 104.0 302 30.1
Cpa.g.sc51.107 Carica papaya HOM05D003349 ORTHO05D003898 7.8e-20 103.6 214 31.3
RcHm_v2.0_Chr3g0497191 Rosa chinensis HOM05D003349 ORTHO05D003898 7.8e-20 103.6 293 28.3
TPR.G34626 Trifolium pratense HOM05D003349 ORTHO05D003898 7.8e-20 103.6 217 30.4
FvH4_5g28880 Fragaria vesca HOM05D003349 ORTHO05D003898 1.0e-19 103.2 264 30.3
Gohir.A11G259100 Gossypium hirsutum HOM05D003349 ORTHO05D003898 1.0e-19 103.2 264 30.7
vmacro12571 Vaccinium macrocarpon HOM05D003349 ORTHO05D003898 1.0e-19 103.2 261 30.3
ECA285G0003 Erigeron canadensis HOM05D003349 ORTHO05D003898 1.7e-19 102.4 273 31.1
Potri.013G058700 Populus trichocarpa HOM05D003349 ORTHO05D003898 1.7e-19 102.4 296 29.1
Sabra13G0052200 Salix brachista HOM05D003349 ORTHO05D003898 1.7e-19 102.4 292 29.1
HanXRQChr01g0024711 Helianthus annuus HOM05D003349 ORTHO05D003898 2.3e-19 102.1 256 30.9
Lj2A357T88 Lonicera japonica HOM05D003349 ORTHO05D003898 2.3e-19 102.1 211 32.2
Sc13g0002710 Simmondsia chinensis HOM05D003349 ORTHO05D003898 2.9e-19 101.7 269 30.1
DCAR_019880 Daucus carota HOM05D003349 ORTHO05D003898 3.9e-19 101.3 273 30.0
FAN18G3983 Fragaria x ananassa HOM05D003349 ORTHO05D003898 3.9e-19 101.3 264 29.9
Rhsim03G0001200 Rhododendron simsii HOM05D003349 ORTHO05D003898 5.0e-19 100.9 263 30.8
Actinidia22087 Actinidia chinensis HOM05D003349 ORTHO05D003898 6.6e-19 100.5 295 30.8
CANSAT56G0778 Cannabis sativa HOM05D003349 ORTHO05D003898 6.6e-19 100.5 206 31.6
Lsat_1_v5_gn_1_59620 Lactuca sativa HOM05D003349 ORTHO05D003898 8.6e-19 100.1 206 32.0
Lalb_Chr21g0317171 Lupinus albus HOM05D003349 ORTHO05D003898 8.6e-19 100.1 296 27.0
Medtr6g032885 Medicago truncatula HOM05D003349 ORTHO05D003898 8.6e-19 100.1 303 29.0
SGA_v2.0_scaffold118G32450 Striga asiatica HOM05D003349 ORTHO05D003898 8.6e-19 100.1 222 32.4
MSTRG.19938 Avicennia marina HOM05D003349 ORTHO05D003898 1.1e-18 99.8 291 27.8
Duzib177G0419 Durio zibethinus HOM05D003349 ORTHO05D003898 1.1e-18 99.8 298 29.2
Glyma.02G071700 Glycine max HOM05D003349 ORTHO05D003898 1.1e-18 99.8 226 30.5
Glyma.16G041800 Glycine max HOM05D003349 ORTHO05D003898 1.5e-18 99.4 263 28.1
BcaB01g02049 Brassica carinata HOM05D003349 ORTHO05D003898 2.5e-18 98.6 316 27.5
CBR_g25968 Chara braunii HOM05D003349 ORTHO05D003898 3.3e-18 98.2 203 31.0
Psat1g096120 Pisum sativum HOM05D003349 ORTHO05D003898 3.3e-18 98.2 303 29.4
Glyma.16G152900 Glycine max HOM05D003349 ORTHO05D003898 4.3e-18 97.8 295 29.5
DCAR_009680 Daucus carota HOM05D003349 ORTHO05D003898 7.3e-18 97.1 224 31.7
HanXRQChr09g0266371 Helianthus annuus HOM05D003349 ORTHO05D003898 9.5e-18 96.7 225 32.9
Lalb_Chr02g0157061 Lupinus albus HOM05D003349 ORTHO05D003898 9.5e-18 96.7 282 30.1
A09p01870 Brassica napus HOM05D003349 ORTHO05D003898 2.1e-17 95.5 324 27.5
ECA238G0201 Erigeron canadensis HOM05D003349 ORTHO05D003898 2.1e-17 95.5 287 30.0
Lsat_1_v5_gn_2_57641 Lactuca sativa HOM05D003349 ORTHO05D003898 2.1e-17 95.5 381 26.2
SHI21767 Sapria himalayana HOM05D003349 ORTHO05D003898 2.8e-17 95.1 206 31.1
Aqoxy2G00587 Aquilegia oxysepala HOM05D003349 ORTHO05D003898 6.1e-17 94.0 219 29.2
BcaNung04050 Brassica carinata HOM05D003349 ORTHO05D003898 8.0e-17 93.6 327 27.5
C09p01910 Brassica napus HOM05D003349 ORTHO05D003898 8.0e-17 93.6 327 27.5
BolC9t53126H Brassica oleracea HOM05D003349 ORTHO05D003898 8.0e-17 93.6 327 27.5
BraA09t35838Z Brassica rapa HOM05D003349 ORTHO05D003898 1.0e-16 93.2 327 27.5
Aa31LG5G14550 Aethionema arabicum HOM05D003349 ORTHO05D003898 3.1e-16 91.7 208 28.4
AL1G64640 Arabidopsis lyrata HOM05D003349 ORTHO05D003898 3.1e-16 91.7 332 28.6
Eucgr.K01495 Eucalyptus grandis HOM05D003349 ORTHO05D003898 4.0e-16 91.3 276 27.9
Thhalv10022309m.g Eutrema salsugineum HOM05D003349 ORTHO05D003898 4.0e-16 91.3 208 29.8
HanXRQChr03g0090421 Helianthus annuus HOM05D003349 ORTHO05D003898 4.0e-16 91.3 206 29.1
THA.LOC104820732 Tarenaya hassleriana HOM05D003349 ORTHO05D003898 4.0e-16 91.3 266 27.8
THA.LOC104802863 Tarenaya hassleriana HOM05D003349 ORTHO05D003898 6.8e-16 90.5 210 28.6
CARHR078110 Cardamine hirsuta HOM05D003349 ORTHO05D003898 1.2e-15 89.7 213 30.0
Sp3g02940 Schrenkiella parvula HOM05D003349 ORTHO05D003898 3.4e-15 88.2 213 29.6
FAN13G1757 Fragaria x ananassa HOM05D003349 ORTHO05D003898 4.4e-15 87.8 262 30.2
HanXRQChr16g0523881 Helianthus annuus HOM05D003349 ORTHO05D003898 9.8e-15 86.7 208 30.8
AL3G13880 Arabidopsis lyrata HOM05D003349 ORTHO05D003898 1.3e-14 86.3 213 30.0
A05p43390 Brassica napus HOM05D003349 ORTHO05D003898 8.3e-14 83.6 215 28.8
BraA05t23079Z Brassica rapa HOM05D003349 ORTHO05D003898 1.1e-13 83.2 215 28.4
Zm00001eb032360 Zea mays HOM05D003349 ORTHO05D003898 1.1e-13 83.2 226 27.4
BcaC05g29887 Brassica carinata HOM05D003349 ORTHO05D003898 1.9e-13 82.4 215 27.9
PGR142G2675 Punica granatum HOM05D003349 ORTHO05D003898 1.9e-13 82.4 296 28.7
C05p63090 Brassica napus HOM05D003349 ORTHO05D003898 2.4e-13 82.0 215 27.9
BolC5t34961H Brassica oleracea HOM05D003349 ORTHO05D003898 2.4e-13 82.0 215 27.9
BcaC05g30298 Brassica carinata HOM05D003349 ORTHO05D003898 4.1e-13 81.3 208 27.9
AagrBONN_evm.TU.Sc2ySwM_117.2517 Anthoceros agrestis HOM05D003349 ORTHO05D003898 5.4e-13 80.9 94 43.6
Os12g0624800 Oryza sativa ssp. japonica HOM05D003349 ORTHO05D003898 5.4e-13 80.9 261 29.9
AT3G03970 Arabidopsis thaliana HOM05D003349 ORTHO05D003898 9.2e-13 80.1 213 29.1
Carub.0003s0322 Capsella rubella HOM05D003349 ORTHO05D003898 2.0e-12 79.0 208 27.4
ATR0605G207 Amborella trichopoda HOM05D003349 ORTHO05D003898 2.8e-09 68.6 204 24.5
BcaC05g30237 Brassica carinata HOM05D003349 ORTHO05D003898 2.3e-08 65.5 204 25.5


User provided reference genes

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