Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c6_15930 Physcomitrium patens HOM05D006220 ORTHO05D007590 2.2e-202 709.5 605 100.0
Os02g0826600 Oryza sativa ssp. japonica HOM05D006220 ORTHO05D007590 6.1e-80 302.8 595 62.2
AagrBONN_evm.TU.Sc2ySwM_362.1464 Anthoceros agrestis HOM05D006220 ORTHO05D007590 3.8e-74 283.5 595 57.8
Mapoly0029s0091 Marchantia polymorpha HOM05D006220 ORTHO05D007590 2.5e-73 280.8 591 61.3
Gohir.A13G145200 Gossypium hirsutum HOM05D006220 ORTHO05D007590 1.5e-70 271.6 594 60.6
Cfa020552 Carpinus fangiana HOM05D006220 ORTHO05D007590 1.3e-69 268.5 594 60.3
HanXRQChr03g0078511 Helianthus annuus HOM05D006220 ORTHO05D007590 3.7e-69 266.9 594 57.9
Nitab4.5_0000207g0180 Nicotiana tabacum HOM05D006220 ORTHO05D007590 5.9e-67 259.6 327 51.1
CAN.G1110.52 Capsicum annuum HOM05D006220 ORTHO05D007590 1.7e-66 258.1 593 63.9
Sp3g13670 Schrenkiella parvula HOM05D006220 ORTHO05D007590 2.9e-66 257.3 596 58.6
arahy.Tifrunner.gnm1.ann1.LU5I8Y Arachis hypogaea HOM05D006220 ORTHO05D007590 3.8e-66 256.9 600 62.2
CSS0010017 Camellia sinensis var. sinensis HOM05D006220 ORTHO05D007590 3.3e-65 253.8 593 60.7
Hund22942 Selenicereus undatus HOM05D006220 ORTHO05D007590 9.5e-65 252.3 593 59.5
Gorai.013G167800 Gossypium raimondii HOM05D006220 ORTHO05D007590 1.2e-64 251.9 594 59.8
TWI38G2391 Tripterygium wilfordii HOM05D006220 ORTHO05D007590 1.6e-64 251.5 594 60.1
Zm00001eb259320 Zea mays HOM05D006220 ORTHO05D007590 2.8e-64 250.8 595 58.5
Sopen10g002840 Solanum pennellii HOM05D006220 ORTHO05D007590 6.1e-64 249.6 593 63.6
RcHm_v2.0_Chr5g0034391 Rosa chinensis HOM05D006220 ORTHO05D007590 1.4e-63 248.4 593 59.5
Gohir.D13G150000 Gossypium hirsutum HOM05D006220 ORTHO05D007590 1.8e-63 248.1 594 59.4
Solyc10g006930.4 Solanum lycopersicum HOM05D006220 ORTHO05D007590 4.0e-63 246.9 593 62.9
Thecc.07G079000 Theobroma cacao HOM05D006220 ORTHO05D007590 4.9e-61 240.0 594 58.6
Hma1.2p1_0148F.1_g066160 Hydrangea macrophylla HOM05D006220 ORTHO05D007590 8.3e-61 239.2 593 57.8
Prupe.4G184800 Prunus persica HOM05D006220 ORTHO05D007590 1.1e-60 238.8 593 55.0
arahy.Tifrunner.gnm1.ann1.BQ9KJC Arachis hypogaea HOM05D006220 ORTHO05D007590 4.1e-60 236.9 600 61.2
AL3G27960 Arabidopsis lyrata HOM05D006220 ORTHO05D007590 7.0e-60 236.1 594 58.4
AT3G15410 Arabidopsis thaliana HOM05D006220 ORTHO05D007590 1.2e-59 235.3 594 58.1
CANSAT56G4311 Cannabis sativa HOM05D006220 ORTHO05D007590 2.7e-59 234.2 593 61.6
SMO200G0168 Selaginella moellendorffii HOM05D006220 ORTHO05D007590 1.0e-58 232.3 596 61.1
Oeu008016.1 Olea europaea HOM05D006220 ORTHO05D007590 1.3e-58 231.9 327 48.6
Carub.0003s1514 Capsella rubella HOM05D006220 ORTHO05D007590 8.6e-58 229.2 594 58.2
HPP92_022050 Vanilla planifolia HOM05D006220 ORTHO05D007590 1.9e-57 228.0 594 56.1
PGR031G1387 Punica granatum HOM05D006220 ORTHO05D007590 5.6e-57 226.5 594 57.1
BcaB06g29573 Brassica carinata HOM05D006220 ORTHO05D007590 7.3e-57 226.1 596 57.0
Lalb_Chr20g0109761 Lupinus albus HOM05D006220 ORTHO05D007590 1.6e-56 224.9 594 60.6
Actinidia05212 Actinidia chinensis HOM05D006220 ORTHO05D007590 3.6e-56 223.8 593 60.7
MD11G1243700 Malus domestica HOM05D006220 ORTHO05D007590 6.1e-56 223.0 596 50.5
ECA240G2314 Erigeron canadensis HOM05D006220 ORTHO05D007590 1.0e-55 222.2 594 56.1
TAR626G0245 Trochodendron aralioides HOM05D006220 ORTHO05D007590 2.3e-55 221.1 582 62.9
CARHR090460 Cardamine hirsuta HOM05D006220 ORTHO05D007590 3.0e-55 220.7 594 57.1
Thhalv10020366m.g Eutrema salsugineum HOM05D006220 ORTHO05D007590 3.0e-55 220.7 596 56.0
COL.COLO4_09426 Corchorus olitorius HOM05D006220 ORTHO05D007590 4.0e-55 220.3 594 56.9
MELO3C016523.2 Cucumis melo HOM05D006220 ORTHO05D007590 4.0e-55 220.3 593 54.6
Atru.chr2.2718 Acer truncatum HOM05D006220 ORTHO05D007590 8.9e-55 219.2 594 61.1
BraA05t22221Z Brassica rapa HOM05D006220 ORTHO05D007590 8.9e-55 219.2 602 56.5
FAN25G1684 Fragaria x ananassa HOM05D006220 ORTHO05D007590 8.9e-55 219.2 593 61.0
AUR62029364 Chenopodium quinoa HOM05D006220 ORTHO05D007590 3.4e-54 217.2 595 42.5
GSVIVG01014371001 Vitis vinifera HOM05D006220 ORTHO05D007590 3.4e-54 217.2 594 56.1
Aqoxy4G01032 Aquilegia oxysepala HOM05D006220 ORTHO05D007590 5.8e-54 216.5 595 60.8
Lj3g0017554 Lotus japonicus HOM05D006220 ORTHO05D007590 2.2e-53 214.5 594 60.1
Manes.03G112900 Manihot esculenta HOM05D006220 ORTHO05D007590 8.3e-53 212.6 594 55.1
Ciclev10007835m.g Citrus clementina HOM05D006220 ORTHO05D007590 1.4e-52 211.8 594 59.6
CsaV3_3G006190 Cucumis sativus L. HOM05D006220 ORTHO05D007590 4.1e-52 210.3 593 53.3
Glyma.13G278800 Glycine max HOM05D006220 ORTHO05D007590 9.2e-52 209.1 594 59.4
Sed0021838 Sechium edule HOM05D006220 ORTHO05D007590 9.2e-52 209.1 593 55.8
FvH4_3g20490 Fragaria vesca HOM05D006220 ORTHO05D007590 2.0e-51 208.0 593 60.4
SGA_v2.0_scaffold9G04934 Striga asiatica HOM05D006220 ORTHO05D007590 1.0e-50 205.7 610 52.8
FAN16G3027 Fragaria x ananassa HOM05D006220 ORTHO05D007590 1.7e-50 204.9 593 60.2
Cc05_g12250 Coffea canephora HOM05D006220 ORTHO05D007590 3.0e-50 204.1 593 56.5
BolC5t33860H Brassica oleracea HOM05D006220 ORTHO05D007590 5.0e-50 203.4 602 55.1
AUR62034280 Chenopodium quinoa HOM05D006220 ORTHO05D007590 7.3e-49 199.5 586 46.4
THA.LOC104810484 Tarenaya hassleriana HOM05D006220 ORTHO05D007590 1.6e-48 198.4 594 55.1
CDE05G0932 Ceratophyllum demersum HOM05D006220 ORTHO05D007590 8.0e-48 196.1 594 57.7
FAN11G1997 Fragaria x ananassa HOM05D006220 ORTHO05D007590 1.4e-47 195.3 607 52.9
A05p33990 Brassica napus HOM05D006220 ORTHO05D007590 2.3e-47 194.5 575 55.5
MBI17_g46353_MAGBIO Magnolia biondii HOM05D006220 ORTHO05D007590 4.0e-47 193.7 325 45.5
Potri.011G121700 Populus trichocarpa HOM05D006220 ORTHO05D007590 1.2e-46 192.2 594 59.1
Glyma.12G222700 Glycine max HOM05D006220 ORTHO05D007590 2.6e-46 191.0 595 55.0
Rhsim06G0196800 Rhododendron simsii HOM05D006220 ORTHO05D007590 4.4e-46 190.3 363 44.1
CBR_g29878 Chara braunii HOM05D006220 ORTHO05D007590 7.5e-46 189.5 254 48.4
Dinv08311 Davidia involucrata HOM05D006220 ORTHO05D007590 9.8e-46 189.1 327 48.9
Nitab4.5_0001320g0170 Nicotiana tabacum HOM05D006220 ORTHO05D007590 1.3e-45 188.7 323 43.7
Lsat_1_v5_gn_9_97140 Lactuca sativa HOM05D006220 ORTHO05D007590 2.2e-45 188.0 538 49.1
Psat5g245040 Pisum sativum HOM05D006220 ORTHO05D007590 2.2e-45 188.0 595 57.8
Nn1g06599 Nelumbo nucifera HOM05D006220 ORTHO05D007590 2.9e-45 187.6 638 55.3
Cpa.g.sc80.40 Carica papaya HOM05D006220 ORTHO05D007590 1.9e-44 184.9 596 50.3
PSO210G4054 Papaver somniferum HOM05D006220 ORTHO05D007590 1.9e-44 184.9 594 57.2
TPR.G38952 Trifolium pratense HOM05D006220 ORTHO05D007590 2.4e-44 184.5 607 51.7
DCAR_017149 Daucus carota HOM05D006220 ORTHO05D007590 4.1e-44 183.7 531 58.4
Peaxi162Scf00027g02813 Petunia axillaris HOM05D006220 ORTHO05D007590 1.7e-42 178.3 327 44.6
Aa31LG8G2650 Aethionema arabicum HOM05D006220 ORTHO05D007590 2.3e-42 177.9 355 40.6
Duzib213G0302 Durio zibethinus HOM05D006220 ORTHO05D007590 3.0e-42 177.6 517 57.6
BcaC05g29008 Brassica carinata HOM05D006220 ORTHO05D007590 8.6e-42 176.0 574 55.1
Medtr2g079560 Medicago truncatula HOM05D006220 ORTHO05D007590 8.6e-42 176.0 574 58.9
Sc16g0006920 Simmondsia chinensis HOM05D006220 ORTHO05D007590 8.6e-42 176.0 528 57.2
Migut.H01927 Erythranthe guttata HOM05D006220 ORTHO05D007590 3.3e-41 174.1 593 54.3
vmacro11856 Vaccinium macrocarpon HOM05D006220 ORTHO05D007590 3.3e-41 174.1 587 57.6
MD00G1090000 Malus domestica HOM05D006220 ORTHO05D007590 7.3e-41 172.9 569 53.8
ATR0680G100 Amborella trichopoda HOM05D006220 ORTHO05D007590 4.7e-40 170.2 594 58.4
unitig_26.g9535 Utricularia gibba HOM05D006220 ORTHO05D007590 4.7e-40 170.2 327 34.9
Haze_09468 Corylus avellana HOM05D006220 ORTHO05D007590 1.1e-39 169.1 220 49.1
VMungo1080G0525 Vigna mungo HOM05D006220 ORTHO05D007590 1.4e-39 168.7 574 59.4
CiPaw.11G172800 Carya illinoinensis HOM05D006220 ORTHO05D007590 6.8e-39 166.4 442 64.7
PSO832G1845 Papaver somniferum HOM05D006220 ORTHO05D007590 1.2e-38 165.6 594 57.7
MSTRG.14365 Avicennia marina HOM05D006220 ORTHO05D007590 7.5e-38 162.9 593 50.4
EL10Ac4g08136 Beta vulgaris HOM05D006220 ORTHO05D007590 7.5e-38 162.9 595 52.3
Phvul.005G083000 Phaseolus vulgaris HOM05D006220 ORTHO05D007590 2.9e-37 161.0 597 56.4
C05p51740 Brassica napus HOM05D006220 ORTHO05D007590 3.7e-37 160.6 307 42.0
ClCG10G006830 Citrullus lanatus HOM05D006220 ORTHO05D007590 3.2e-36 157.5 551 52.5
Eucgr.F03334 Eucalyptus grandis HOM05D006220 ORTHO05D007590 3.2e-36 157.5 593 51.8
Hma1.2p1_0148F.1_g066170 Hydrangea macrophylla HOM05D006220 ORTHO05D007590 5.4e-36 156.8 296 44.9
Sabra11G0107700 Salix brachista HOM05D006220 ORTHO05D007590 2.1e-35 154.8 683 49.2
SalBow7G3592 Salvia bowleyana HOM05D006220 ORTHO05D007590 1.1e-31 142.5 570 44.6
Lj1A847G19 Lonicera japonica HOM05D006220 ORTHO05D007590 2.4e-31 141.4 326 42.0
arahy.Tifrunner.gnm1.ann1.XCJ8AH Arachis hypogaea HOM05D006220 ORTHO05D007590 4.6e-27 127.1 154 46.8
MD11G1243500 Malus domestica HOM05D006220 ORTHO05D007590 9.9e-22 109.4 197 42.1
Cre01.g054100 Chlamydomonas reinhardtii HOM05D006220 ORTHO05D007590 2.1e-16 91.7 671 39.2
MCO03G083 Micromonas commoda HOM05D006220 ORTHO05D007590 3.4e-14 84.3 298 31.5
Cc05_g12270 Coffea canephora HOM05D006220 ORTHO05D007590 9.9e-14 82.8 126 50.0
Cc05_g12290 Coffea canephora HOM05D006220 ORTHO05D007590 9.9e-14 82.8 126 50.0
Cc05_g12300 Coffea canephora HOM05D006220 ORTHO05D007590 9.9e-14 82.8 126 50.0
FAN11G3846 Fragaria x ananassa HOM05D000189 ORTHO05D007610 9.9e-14 82.8 227 28.2
Sabra11G0106700 Salix brachista HOM05D006220 ORTHO05D007590 1.3e-13 82.4 73 53.4
Sabra11G0107000 Salix brachista HOM05D006220 ORTHO05D007590 1.3e-13 82.4 73 53.4
Sabra11G0105900 Salix brachista HOM05D006220 ORTHO05D007590 3.8e-13 80.9 73 52.1
CBR_g29877 Chara braunii HOM05D005358 ORTHO05D006384 8.4e-13 79.7 73 50.7
Sabra11G0105600 Salix brachista HOM05D006220 ORTHO05D007590 8.4e-13 79.7 73 52.1
vmacro07967 Vaccinium macrocarpon HOM05D004270 ORTHO05D007590 1.4e-12 79.0 64 54.7
Thecc.07G078400 Theobroma cacao HOM05D006220 ORTHO05D007590 4.2e-12 77.4 98 58.2
Sc13g0008670 Simmondsia chinensis HOM05D006220 ORTHO05D007590 1.6e-11 75.5 98 58.2
HPP92_027622 Vanilla planifolia HOM05D006220 ORTHO05D007590 1.0e-10 72.8 73 46.6
Nitab4.5_0001320g0180 Nicotiana tabacum HOM05D006220 ORTHO05D007590 2.8e-08 64.7 96 36.5
Gohir.1Z049312 Gossypium hirsutum HOM05D006220 ORTHO05D007590 3.7e-08 64.3 119 34.5
Atru.chr2.2722 Acer truncatum HOM05D006220 ORTHO05D017154 1.4e-07 62.4 119 35.3
Lsat_1_v5_gn_9_85500 Lactuca sativa HOM05D006220 ORTHO05D007590 1.8e-07 62.0 102 36.3


User provided reference genes

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