Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c5_9920 Physcomitrium patens HOM05D005554 ORTHO05D007823 3.7e-39 164.5 86 100.0
Pp3c23_15810 Physcomitrium patens HOM05D005554 ORTHO05D007823 4.0e-17 91.3 79 73.4
Pp3c24_18820 Physcomitrium patens HOM05D005554 ORTHO05D007823 1.0e-12 76.6 82 54.9
Migut.E01089 Erythranthe guttata HOM05D005554 ORTHO05D007823 3.6e-10 68.2 80 52.5
SMO147G0132 Selaginella moellendorffii HOM05D005554 ORTHO05D007823 3.6e-10 68.2 79 53.2
Gorai.003G158300 Gossypium raimondii HOM05D005554 ORTHO05D007823 8.0e-10 67.0 81 49.4
Cc08_g14820 Coffea canephora HOM05D005554 ORTHO05D007823 1.0e-09 66.6 80 48.8
Pp3c3_2590 Physcomitrium patens HOM05D005554 ORTHO05D313840 1.4e-09 66.2 86 52.3
AagrBONN_evm.TU.Sc2ySwM_228.1600 Anthoceros agrestis HOM05D005554 ORTHO05D007823 2.3e-09 65.5 80 50.0
CSS0044545 Camellia sinensis var. sinensis HOM05D005554 ORTHO05D007823 3.0e-09 65.1 80 48.8
Mapoly0091s0082 Marchantia polymorpha HOM05D005554 ORTHO05D007823 3.0e-09 65.1 79 50.6
Gohir.A03G016800 Gossypium hirsutum HOM05D005554 ORTHO05D007823 4.0e-09 64.7 81 49.4
Lj2C185T6 Lonicera japonica HOM05D005554 ORTHO05D007823 4.0e-09 64.7 80 50.0
Aa31LG2G890 Aethionema arabicum HOM05D005554 ORTHO05D007823 5.2e-09 64.3 82 43.9
Oeu064085.1 Olea europaea HOM05D005554 ORTHO05D007823 5.2e-09 64.3 80 47.5
Hma1.2p1_0377F.1_g139310 Hydrangea macrophylla HOM05D005554 ORTHO05D007823 6.8e-09 63.9 80 46.2
Peaxi162Scf00119g01015 Petunia axillaris HOM05D005554 ORTHO05D007823 6.8e-09 63.9 80 46.2
DCAR_000617 Daucus carota HOM05D005554 ORTHO05D007823 8.9e-09 63.5 80 45.0
PGR031G2745 Punica granatum HOM05D005554 ORTHO05D007823 8.9e-09 63.5 80 46.2
SalBow1G4020 Salvia bowleyana HOM05D005554 ORTHO05D007823 8.9e-09 63.5 80 45.0
Nitab4.5_0010813g0010 Nicotiana tabacum HOM05D005554 ORTHO05D007823 1.2e-08 63.2 80 45.0
Haze_08788 Corylus avellana HOM05D005554 ORTHO05D007823 1.5e-08 62.8 80 45.0
Actinidia14567 Actinidia chinensis HOM05D005554 ORTHO05D007823 2.0e-08 62.4 80 47.5
ATR0680G162 Amborella trichopoda HOM05D005554 ORTHO05D007823 2.0e-08 62.4 81 46.9
CBR_g32224 Chara braunii HOM05D005554 ORTHO05D007823 2.0e-08 62.4 85 43.5
Atru.chr9.2175 Acer truncatum HOM05D005554 ORTHO05D007823 2.6e-08 62.0 80 47.5
Cfa012222 Carpinus fangiana HOM05D005554 ORTHO05D007823 2.6e-08 62.0 80 47.5
CDE05G1777 Ceratophyllum demersum HOM05D005554 ORTHO05D007823 2.6e-08 62.0 80 46.2
COL.COLO4_34475 Corchorus olitorius HOM05D005554 ORTHO05D007823 2.6e-08 62.0 80 45.0
Nitab4.5_0001615g0110 Nicotiana tabacum HOM05D005554 ORTHO05D007823 2.6e-08 62.0 80 43.8
THA.LOC104823588 Tarenaya hassleriana HOM05D005554 ORTHO05D007823 2.6e-08 62.0 79 44.3
CiPaw.12G092300 Carya illinoinensis HOM05D005554 ORTHO05D007823 3.4e-08 61.6 80 43.8
Dinv38934 Davidia involucrata HOM05D005554 ORTHO05D007823 3.4e-08 61.6 80 47.5
PSO478G3044 Papaver somniferum HOM05D005554 ORTHO05D007823 3.4e-08 61.6 80 45.0
unitig_26.g9706 Utricularia gibba HOM05D005554 ORTHO05D007823 3.4e-08 61.6 80 45.0
CAN.G774.53 Capsicum annuum HOM05D005554 ORTHO05D007823 4.4e-08 61.2 80 45.0
Ciclev10018956m.g Citrus clementina HOM05D005554 ORTHO05D007823 4.4e-08 61.2 80 46.2
PSO782G1990 Papaver somniferum HOM05D005554 ORTHO05D007823 4.4e-08 61.2 80 43.8
Sed0016596 Sechium edule HOM05D005554 ORTHO05D007823 4.4e-08 61.2 81 44.4
Solyc08g081170.4 Solanum lycopersicum HOM05D005554 ORTHO05D007823 4.4e-08 61.2 80 43.8
PGSC0003DMG402012338 Solanum tuberosum HOM05D005554 ORTHO05D007823 4.4e-08 61.2 80 43.8
Carub.0002s0117 Capsella rubella HOM05D005554 ORTHO05D007823 5.7e-08 60.8 79 43.0
Thhalv10023292m.g Eutrema salsugineum HOM05D005554 ORTHO05D007823 5.7e-08 60.8 79 43.0
Gohir.D12G231000 Gossypium hirsutum HOM05D005554 ORTHO05D007823 5.7e-08 60.8 80 47.5
Gorai.008G247200 Gossypium raimondii HOM05D005554 ORTHO05D007823 5.7e-08 60.8 80 47.5
CARHR047660 Cardamine hirsuta HOM05D005554 ORTHO05D007823 7.5e-08 60.5 79 43.0
MBI18_g45367_MAGBIO Magnolia biondii HOM05D005554 ORTHO05D007823 7.5e-08 60.5 80 46.2
QL12p032791 Quercus lobata HOM05D005554 ORTHO05D007823 7.5e-08 60.5 80 46.2
Sp2g00970 Schrenkiella parvula HOM05D005554 ORTHO05D007823 7.5e-08 60.5 79 43.0
SGA_v2.0_scaffold144G35937 Striga asiatica HOM05D005554 ORTHO05D007823 7.5e-08 60.5 80 43.8
Aqoxy7G00299 Aquilegia oxysepala HOM05D005554 ORTHO05D007823 9.8e-08 60.1 80 47.5
AL2G11550 Arabidopsis lyrata HOM05D005554 ORTHO05D007823 9.8e-08 60.1 79 43.0
CANSAT21G2493 Cannabis sativa HOM05D005554 ORTHO05D007823 9.8e-08 60.1 80 42.5
Sopen08g029470 Solanum pennellii HOM05D005554 ORTHO05D007823 9.8e-08 60.1 80 42.5
Thecc.03G279900 Theobroma cacao HOM05D005554 ORTHO05D007823 9.8e-08 60.1 80 47.5
TAR375G0921 Trochodendron aralioides HOM05D005554 ORTHO05D007823 9.8e-08 60.1 79 45.6
ClCG01G002630 Citrullus lanatus HOM05D005554 ORTHO05D007823 1.3e-07 59.7 81 45.7
MELO3C005683.2 Cucumis melo HOM05D005554 ORTHO05D007823 1.3e-07 59.7 81 45.7
CsaV3_5G002730 Cucumis sativus L. HOM05D005554 ORTHO05D007823 1.3e-07 59.7 81 45.7
FAN04G0002 Fragaria x ananassa HOM05D005554 ORTHO05D007823 1.3e-07 59.7 80 47.5
FAN08G3292 Fragaria x ananassa HOM05D005554 ORTHO05D007823 1.3e-07 59.7 80 47.5
TWI15G0555 Tripterygium wilfordii HOM05D005554 ORTHO05D007823 1.3e-07 59.7 80 45.0
vmacro11364 Vaccinium macrocarpon HOM05D005554 ORTHO05D007823 1.3e-07 59.7 79 45.6
BcaB07g31556 Brassica carinata HOM05D005554 ORTHO05D007823 1.7e-07 59.3 79 41.8
BcaC04g22690 Brassica carinata HOM05D005554 ORTHO05D007823 1.7e-07 59.3 79 41.8
A09p13810 Brassica napus HOM05D005554 ORTHO05D007823 1.7e-07 59.3 79 41.8
C09p16520 Brassica napus HOM05D005554 ORTHO05D007823 1.7e-07 59.3 79 41.8
BolC9t54561H Brassica oleracea HOM05D005554 ORTHO05D007823 1.7e-07 59.3 79 41.8
BraA09t37033Z Brassica rapa HOM05D005554 ORTHO05D007823 1.7e-07 59.3 79 41.8
Nn6g33413 Nelumbo nucifera HOM05D005554 ORTHO05D007823 1.7e-07 59.3 80 46.2
AT1G63680 Arabidopsis thaliana HOM05D005554 ORTHO05D007823 2.2e-07 58.9 79 41.8
Prupe.5G101100 Prunus persica HOM05D005554 ORTHO05D007823 2.2e-07 58.9 80 47.5
Ah.10g034840 Amaranthus hybridus HOM05D005554 ORTHO05D007823 2.8e-07 58.5 80 46.2
arahy.Tifrunner.gnm1.ann1.C4WXPV Arachis hypogaea HOM05D005554 ORTHO05D007823 2.8e-07 58.5 79 43.0
Glyma.05G208600 Glycine max HOM05D005554 ORTHO05D007823 2.8e-07 58.5 80 45.0
Glyma.05G208921 Glycine max HOM05D005554 ORTHO05D007823 2.8e-07 58.5 80 45.0
MD06G1085100 Malus domestica HOM05D005554 ORTHO05D007823 2.8e-07 58.5 80 46.2
EL10Ac6g14928 Beta vulgaris HOM05D005554 ORTHO05D007823 3.7e-07 58.2 80 43.8
Cpa.g.sc74.56 Carica papaya HOM05D005554 ORTHO05D007823 3.7e-07 58.2 80 43.8
ECA246G2370 Erigeron canadensis HOM05D005554 ORTHO05D007823 3.7e-07 58.2 80 40.0
Eucgr.D01840 Eucalyptus grandis HOM05D005554 ORTHO05D007823 3.7e-07 58.2 80 43.8
FvH4_5g02610 Fragaria vesca HOM05D005554 ORTHO05D007823 3.7e-07 58.2 80 46.2
FAN13G2706 Fragaria x ananassa HOM05D005554 ORTHO05D007823 3.7e-07 58.2 80 46.2
FAN18G3000 Fragaria x ananassa HOM05D005554 ORTHO05D007823 3.7e-07 58.2 80 46.2
RcHm_v2.0_Chr7g0197491 Rosa chinensis HOM05D005554 ORTHO05D007823 3.7e-07 58.2 80 46.2
Ca_17525_v3 Cicer arietinum L. HOM05D005554 ORTHO05D007823 4.9e-07 57.8 80 41.2
Gohir.A12G229900 Gossypium hirsutum HOM05D005554 ORTHO05D007823 4.9e-07 57.8 80 46.2
Hund14815 Selenicereus undatus HOM05D005554 ORTHO05D007823 4.9e-07 57.8 80 43.8
Potri.001G103300 Populus trichocarpa HOM05D005554 ORTHO05D007823 6.3e-07 57.4 80 43.8
Sabra01G0078000 Salix brachista HOM05D005554 ORTHO05D007823 6.3e-07 57.4 80 43.8
MSTRG.13839 Avicennia marina HOM05D005554 ORTHO05D007823 8.3e-07 57.0 80 42.5
Lsat_1_v5_gn_3_6620 Lactuca sativa HOM05D005554 ORTHO05D007823 8.3e-07 57.0 80 40.0
Medtr8g098345 Medicago truncatula HOM05D005554 ORTHO05D007823 8.3e-07 57.0 79 40.5
Gohir.D03G151100 Gossypium hirsutum HOM05D005554 ORTHO05D007823 1.1e-06 56.6 34 70.6
Lj4g0004686 Lotus japonicus HOM05D005554 ORTHO05D007823 1.1e-06 56.6 79 41.8
Duzib205G0518 Durio zibethinus HOM05D005554 ORTHO05D007823 1.4e-06 56.2 80 45.0
Lalb_Chr05g0224711 Lupinus albus HOM05D005554 ORTHO05D007823 1.4e-06 56.2 80 43.8
Glyma.08G015200 Glycine max HOM05D005554 ORTHO05D007823 1.8e-06 55.8 80 42.5
Manes.02G019800 Manihot esculenta HOM05D005554 ORTHO05D007823 2.4e-06 55.5 80 42.5
TPR.G12960 Trifolium pratense HOM05D005554 ORTHO05D007823 2.4e-06 55.5 79 43.0
HPP92_014728 Vanilla planifolia HOM05D005554 ORTHO05D007823 2.4e-06 55.5 81 44.4
arahy.Tifrunner.gnm1.ann1.CVD0A8 Arachis hypogaea HOM05D005554 ORTHO05D007823 3.1e-06 55.1 79 41.8
Phvul.002G290300 Phaseolus vulgaris HOM05D005554 ORTHO05D007823 4.1e-06 54.7 80 42.5
Sc01g0009640 Simmondsia chinensis HOM05D005554 ORTHO05D007823 4.1e-06 54.7 80 41.2
Psat7g032760 Pisum sativum HOM05D005554 ORTHO05D007823 5.4e-06 54.3 79 39.2
HPP92_008493 Vanilla planifolia HOM05D005554 ORTHO05D007823 5.4e-06 54.3 81 44.4
VMungo0251G0638 Vigna mungo HOM05D005554 ORTHO05D007823 9.2e-06 53.5 80 42.5


User provided reference genes

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