Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c5_4230 Physcomitrium patens HOM05D004382 ORTHO05D005181 6.1e-68 260.8 138 100.0
Pp3c16_5650 Physcomitrium patens HOM05D004382 ORTHO05D005181 6.1e-52 207.6 128 83.6
Pp3c27_2340 Physcomitrium patens HOM05D004382 ORTHO05D005181 6.7e-51 204.1 128 84.4
Pp3c27_2320 Physcomitrium patens HOM05D004382 ORTHO05D005181 1.8e-48 196.1 128 82.8
AagrBONN_evm.TU.Sc2ySwM_228.2640 Anthoceros agrestis HOM05D004382 ORTHO05D005181 1.2e-34 150.2 127 65.4
Mapoly0006s0055 Marchantia polymorpha HOM05D004382 ORTHO05D005181 2.6e-34 149.1 136 61.8
SEGI_14655 Sequoiadendron giganteum HOM05D004382 ORTHO05D005181 7.0e-32 141.0 138 59.4
SMO134G0197 Selaginella moellendorffii HOM05D004382 ORTHO05D005181 1.0e-30 137.1 134 57.5
PSO541G3267 Papaver somniferum HOM05D004382 ORTHO05D005181 2.3e-30 136.0 124 60.5
PSO675G7775 Papaver somniferum HOM05D004382 ORTHO05D005181 2.3e-30 136.0 124 60.5
HPP92_016563 Vanilla planifolia HOM05D004382 ORTHO05D005181 2.3e-30 136.0 117 63.2
AUR62022575 Chenopodium quinoa HOM05D004382 ORTHO05D005181 8.6e-30 134.0 130 58.5
Lalb_Chr01g0015971 Lupinus albus HOM05D004382 ORTHO05D005181 8.6e-30 134.0 119 63.0
SGA_v2.0_scaffold49G18168 Striga asiatica HOM05D004382 ORTHO05D005181 1.1e-29 133.7 140 57.1
CiPaw.11G067100 Carya illinoinensis HOM05D004382 ORTHO05D005181 1.5e-29 133.3 141 57.4
AUR62004366 Chenopodium quinoa HOM05D004382 ORTHO05D005181 2.5e-29 132.5 130 58.5
Nn3g20146 Nelumbo nucifera HOM05D002089 ORTHO05D011346 2.5e-29 132.5 122 61.5
GSVIVG01020484001 Vitis vinifera HOM05D004382 ORTHO05D005181 3.3e-29 132.1 121 62.0
Actinidia37109 Actinidia chinensis HOM05D004382 ORTHO05D005181 4.2e-29 131.7 120 62.5
Mapoly0001s0109 Marchantia polymorpha HOM05D004382 ORTHO05D005181 5.5e-29 131.3 134 57.5
CDE04G0985 Ceratophyllum demersum HOM05D004382 ORTHO05D005181 7.2e-29 131.0 138 55.1
EL10Ac4g08547 Beta vulgaris HOM05D004382 ORTHO05D005181 1.2e-28 130.2 122 59.8
CDE12G0390 Ceratophyllum demersum HOM05D004382 ORTHO05D005181 1.2e-28 130.2 138 54.3
Lalb_Chr25g0285191 Lupinus albus HOM05D004382 ORTHO05D005181 1.2e-28 130.2 126 57.9
Thhalv10019302m.g Eutrema salsugineum HOM05D004382 ORTHO05D005181 1.6e-28 129.8 142 53.5
PGSC0003DMG400022241 Solanum tuberosum HOM05D004382 ORTHO05D005181 1.6e-28 129.8 140 55.0
CDE11G0376 Ceratophyllum demersum HOM05D004382 ORTHO05D005181 2.1e-28 129.4 120 58.3
Ca_03704_v3 Cicer arietinum L. HOM05D004382 ORTHO05D005181 2.1e-28 129.4 141 56.0
FAN21G1818 Fragaria x ananassa HOM05D004382 ORTHO05D005181 2.1e-28 129.4 141 56.0
Peaxi162Scf00006g00149 Petunia axillaris HOM05D004382 ORTHO05D005181 2.1e-28 129.4 120 60.0
TAR627G0744 Trochodendron aralioides HOM05D004382 ORTHO05D005181 2.1e-28 129.4 117 59.8
Atru.chr2.1854 Acer truncatum HOM05D004382 ORTHO05D005181 2.8e-28 129.0 139 56.8
A07p27340 Brassica napus HOM05D004382 ORTHO05D005181 2.8e-28 129.0 142 54.2
BraA07t30375Z Brassica rapa HOM05D004382 ORTHO05D005181 2.8e-28 129.0 142 54.2
FvH4_3g16050 Fragaria vesca HOM05D004382 ORTHO05D005181 2.8e-28 129.0 141 56.7
FAN11G1612 Fragaria x ananassa HOM05D004382 ORTHO05D005181 2.8e-28 129.0 141 56.7
RcHm_v2.0_Chr5g0027021 Rosa chinensis HOM05D004382 ORTHO05D005181 2.8e-28 129.0 141 56.0
MBI02_g25371_MAGBIO Magnolia biondii HOM05D004382 ORTHO05D005181 3.6e-28 128.6 119 59.7
TWI38G0625 Tripterygium wilfordii HOM05D004382 ORTHO05D005181 3.6e-28 128.6 143 54.5
CANSAT56G1367 Cannabis sativa HOM05D004382 ORTHO05D005181 4.7e-28 128.3 141 56.7
FAN25G3309 Fragaria x ananassa HOM05D004382 ORTHO05D005181 4.7e-28 128.3 141 56.0
Manes.15G102500 Manihot esculenta HOM05D004382 ORTHO05D005181 4.7e-28 128.3 123 59.3
SalBow5G1313 Salvia bowleyana HOM05D004382 ORTHO05D005181 4.7e-28 128.3 116 59.5
SalBow5G2519 Salvia bowleyana HOM05D004382 ORTHO05D005181 4.7e-28 128.3 116 59.5
CAN.G943.25 Capsicum annuum HOM05D004382 ORTHO05D005181 6.1e-28 127.9 120 59.2
MD10G1198300 Malus domestica HOM05D004382 ORTHO05D005181 6.1e-28 127.9 143 55.9
BcaB02g07194 Brassica carinata HOM05D004382 ORTHO05D005181 8.0e-28 127.5 142 53.5
Medtr2g064650 Medicago truncatula HOM05D004382 ORTHO05D005181 8.0e-28 127.5 141 57.4
TPR.G10344 Trifolium pratense HOM05D004382 ORTHO05D005181 8.0e-28 127.5 141 56.7
MD05G1215200 Malus domestica HOM05D004382 ORTHO05D005181 1.0e-27 127.1 143 55.9
Nitab4.5_0000134g0030 Nicotiana tabacum HOM05D004382 ORTHO05D005181 1.0e-27 127.1 120 58.3
Psat1g002320 Pisum sativum HOM05D004382 ORTHO05D005181 1.0e-27 127.1 140 56.4
Solyc07g066310.3 Solanum lycopersicum HOM05D004382 ORTHO05D005181 1.0e-27 127.1 139 54.7
Sopen07g034490 Solanum pennellii HOM05D004382 ORTHO05D005181 1.0e-27 127.1 139 54.7
Gohir.A01G037100 Gossypium hirsutum HOM05D004382 ORTHO05D005181 1.4e-27 126.7 95 67.4
Aqoxy1G01569 Aquilegia oxysepala HOM05D004382 ORTHO05D005181 1.8e-27 126.3 141 53.9
BcaC03g15860 Brassica carinata HOM05D004382 ORTHO05D005181 1.8e-27 126.3 142 53.5
A02p22470 Brassica napus HOM05D004382 ORTHO05D005181 1.8e-27 126.3 142 53.5
C02p36150 Brassica napus HOM05D004382 ORTHO05D005181 1.8e-27 126.3 142 53.5
BolC2t09629H Brassica oleracea HOM05D004382 ORTHO05D005181 1.8e-27 126.3 142 53.5
BraA02t07252Z Brassica rapa HOM05D004382 ORTHO05D005181 1.8e-27 126.3 142 53.5
Glyma.15G253700 Glycine max HOM05D004382 ORTHO05D005181 1.8e-27 126.3 139 56.1
TWI38G0568 Tripterygium wilfordii HOM05D004382 ORTHO05D005181 1.8e-27 126.3 142 54.2
Gorai.002G032900 Gossypium raimondii HOM05D004382 ORTHO05D005181 2.3e-27 125.9 95 67.4
Lj3g0019499 Lotus japonicus HOM05D004382 ORTHO05D005181 2.3e-27 125.9 140 55.7
ClCG07G010700 Citrullus lanatus HOM05D004382 ORTHO05D005181 3.0e-27 125.6 120 60.8
Sp5g34090 Schrenkiella parvula HOM05D004382 ORTHO05D005181 3.0e-27 125.6 142 51.4
MSTRG.14535 Avicennia marina HOM05D004382 ORTHO05D005181 4.0e-27 125.2 119 58.8
BcaB05g25168 Brassica carinata HOM05D004382 ORTHO05D005181 4.0e-27 125.2 142 52.1
BcaC08g45389 Brassica carinata HOM05D004382 ORTHO05D005181 4.0e-27 125.2 142 52.8
BcaC08g47468 Brassica carinata HOM05D004382 ORTHO05D005181 4.0e-27 125.2 142 54.2
A07p44190 Brassica napus HOM05D004382 ORTHO05D005181 4.0e-27 125.2 142 54.2
C06p30200 Brassica napus HOM05D004382 ORTHO05D005181 4.0e-27 125.2 142 52.8
C06p52920 Brassica napus HOM05D004382 ORTHO05D005181 4.0e-27 125.2 142 54.2
BolC6t38183H Brassica oleracea HOM05D004382 ORTHO05D005181 4.0e-27 125.2 142 52.8
BolC6t40310H Brassica oleracea HOM05D004382 ORTHO05D005181 4.0e-27 125.2 142 54.2
BraA07t31927Z Brassica rapa HOM05D004382 ORTHO05D005181 4.0e-27 125.2 142 54.2
Nitab4.5_0000313g0040 Nicotiana tabacum HOM05D004382 ORTHO05D005181 4.0e-27 125.2 139 54.7
THA.LOC104812349 Tarenaya hassleriana HOM05D004382 ORTHO05D005181 4.0e-27 125.2 134 55.2
Aa31LG4G1950 Aethionema arabicum HOM05D004382 ORTHO05D005181 5.2e-27 124.8 142 53.5
ATR1098G153 Amborella trichopoda HOM05D004382 ORTHO05D005181 5.2e-27 124.8 141 53.9
Cc05_g15930 Coffea canephora HOM05D004382 ORTHO05D005181 5.2e-27 124.8 140 52.9
DCAR_009633 Daucus carota HOM05D004382 ORTHO05D005181 5.2e-27 124.8 127 55.9
Nitab4.5_0002475g0030 Nicotiana tabacum HOM05D004382 ORTHO05D005181 5.2e-27 124.8 141 53.2
Prupe.4G143700 Prunus persica HOM05D004382 ORTHO05D005181 5.2e-27 124.8 137 56.2
Sed0014118 Sechium edule HOM05D004382 ORTHO05D005181 6.8e-27 124.4 117 61.5
CSS0001445 Camellia sinensis var. sinensis HOM05D004382 ORTHO05D005181 8.9e-27 124.0 142 52.1
CSS0016237 Camellia sinensis var. sinensis HOM05D004382 ORTHO05D005181 8.9e-27 124.0 120 55.8
Glyma.08G173700 Glycine max HOM05D004382 ORTHO05D005181 8.9e-27 124.0 140 55.0
Rhsim04G0006200 Rhododendron simsii HOM05D004382 ORTHO05D005181 8.9e-27 124.0 134 54.5
SalBow8G0430 Salvia bowleyana HOM05D004382 ORTHO05D005181 8.9e-27 124.0 138 55.8
BcaB02g08662 Brassica carinata HOM05D004382 ORTHO05D005181 1.2e-26 123.6 142 53.5
Potri.001G438700 Populus trichocarpa HOM05D004382 ORTHO05D005181 1.2e-26 123.6 136 54.4
Hund10309 Selenicereus undatus HOM05D004382 ORTHO05D005181 1.2e-26 123.6 132 54.5
Ah.08g216320 Amaranthus hybridus HOM05D004382 ORTHO05D005181 1.5e-26 123.2 142 54.2
arahy.Tifrunner.gnm1.ann1.9QX17Y Arachis hypogaea HOM05D004382 ORTHO05D005181 1.5e-26 123.2 140 54.3
Migut.H01700 Erythranthe guttata HOM05D004382 ORTHO05D005181 1.5e-26 123.2 140 53.6
HanXRQChr05g0160651 Helianthus annuus HOM05D004382 ORTHO05D005181 1.5e-26 123.2 137 53.3
arahy.Tifrunner.gnm1.ann1.HCTL36 Arachis hypogaea HOM05D004382 ORTHO05D005181 2.0e-26 122.9 140 55.0
MSTRG.7052 Avicennia marina HOM05D004382 ORTHO05D005181 2.0e-26 122.9 142 51.4
Phvul.005G055200 Phaseolus vulgaris HOM05D004382 ORTHO05D005181 2.0e-26 122.9 140 55.0
Sopen12g008070 Solanum pennellii HOM05D004382 ORTHO05D005181 2.0e-26 122.9 135 51.9
Carub.0002s2591 Capsella rubella HOM05D004382 ORTHO05D005181 2.6e-26 122.5 142 52.1
Duzib187G1376 Durio zibethinus HOM05D004382 ORTHO05D005181 2.6e-26 122.5 135 54.1
Eucgr.F01447 Eucalyptus grandis HOM05D004382 ORTHO05D005181 2.6e-26 122.5 135 54.1
Zm00001eb171230 Zea mays HOM05D004382 ORTHO05D005181 2.6e-26 122.5 119 60.5
Lalb_Chr03g0031561 Lupinus albus HOM05D004382 ORTHO05D005181 3.4e-26 122.1 141 52.5
Sed0025739 Sechium edule HOM05D004382 ORTHO05D005181 3.4e-26 122.1 117 59.8
unitig_8.g4771 Utricularia gibba HOM05D004382 ORTHO05D005181 3.4e-26 122.1 118 58.5
ClCG11G016280 Citrullus lanatus HOM05D004382 ORTHO05D005181 4.4e-26 121.7 108 63.0
ECA236G0888 Erigeron canadensis HOM05D004382 ORTHO05D005181 4.4e-26 121.7 117 56.4
HanXRQChr08g0232801 Helianthus annuus HOM05D004382 ORTHO05D005181 4.4e-26 121.7 138 53.6
Hma1.2p1_0193F.1_g084500 Hydrangea macrophylla HOM05D004382 ORTHO05D005181 4.4e-26 121.7 120 55.8
Hma1.2p1_0321F.1_g124500 Hydrangea macrophylla HOM05D004382 ORTHO05D005181 4.4e-26 121.7 120 56.7
Oeu002809.1 Olea europaea HOM05D004382 ORTHO05D005181 4.4e-26 121.7 140 54.3
Oeu003841.1 Olea europaea HOM05D004382 ORTHO05D005181 4.4e-26 121.7 117 58.1
Os07g0147550 Oryza sativa ssp. japonica HOM05D004382 ORTHO05D005181 4.4e-26 121.7 138 51.4
Solyc12g017250.2 Solanum lycopersicum HOM05D004382 ORTHO05D005181 4.4e-26 121.7 135 51.1
Ciclev10022793m.g Citrus clementina HOM05D004382 ORTHO05D005181 5.7e-26 121.3 142 50.7
CsaV3_4G007600 Cucumis sativus L. HOM05D004382 ORTHO05D005181 5.7e-26 121.3 119 58.0
Potri.011G142200 Populus trichocarpa HOM05D004382 ORTHO05D005181 5.7e-26 121.3 136 52.9
AT1G79040 Arabidopsis thaliana HOM05D004382 ORTHO05D005181 7.5e-26 120.9 142 51.4
Peaxi162Scf00232g01129 Petunia axillaris HOM05D004382 ORTHO05D005181 7.5e-26 120.9 137 54.0
Sabra11G0127600 Salix brachista HOM05D004382 ORTHO05D005181 7.5e-26 120.9 140 52.1
CARHR072720 Cardamine hirsuta HOM05D004382 ORTHO05D005181 9.8e-26 120.6 142 52.1
COL.COLO4_05073 Corchorus olitorius HOM05D004382 ORTHO05D005181 9.8e-26 120.6 143 55.2
DCAR_016816 Daucus carota HOM05D004382 ORTHO05D005181 9.8e-26 120.6 123 55.3
PGR142G2616 Punica granatum HOM05D004382 ORTHO05D005181 9.8e-26 120.6 136 52.2
DCAR_013749 Daucus carota HOM05D004382 ORTHO05D005181 1.3e-25 120.2 148 52.0
Os07g0147500 Oryza sativa ssp. japonica HOM05D004382 ORTHO05D005181 1.3e-25 120.2 136 50.7
QL04p074767 Quercus lobata HOM05D004382 ORTHO05D005181 1.3e-25 120.2 136 52.2
Sed0016780 Sechium edule HOM05D004382 ORTHO05D005181 1.7e-25 119.8 136 54.4
vmacro09788 Vaccinium macrocarpon HOM05D004382 ORTHO05D005181 2.2e-25 119.4 140 54.3
Gohir.D05G330700 Gossypium hirsutum HOM05D004382 ORTHO05D005181 2.9e-25 119.0 137 52.6
Gorai.009G354500 Gossypium raimondii HOM05D004382 ORTHO05D005181 2.9e-25 119.0 137 52.6
Sc16g0003480 Simmondsia chinensis HOM05D004382 ORTHO05D005181 2.9e-25 119.0 140 52.1
Gohir.A04G050200 Gossypium hirsutum HOM05D004382 ORTHO05D005181 3.7e-25 118.6 137 51.8
Potri.001G438800 Populus trichocarpa HOM05D004382 ORTHO05D005181 4.9e-25 118.2 121 54.5
Thecc.07G156900 Theobroma cacao HOM05D004382 ORTHO05D005181 8.3e-25 117.5 135 51.1
VMungo1080G1647 Vigna mungo HOM05D004382 ORTHO05D005181 8.3e-25 117.5 140 52.1
Os08g0200300 Oryza sativa ssp. japonica HOM05D004382 ORTHO05D005181 1.4e-24 116.7 134 53.0
Rhsim06G0237200 Rhododendron simsii HOM05D006828 ORTHO05D008312 2.4e-24 115.9 102 60.8
Manes.03G082900 Manihot esculenta HOM05D004382 ORTHO05D005181 4.1e-24 115.2 141 51.1
Nitab4.5_0001791g0030 Nicotiana tabacum HOM05D004382 ORTHO05D005181 5.4e-24 114.8 118 55.9
AL2G39500 Arabidopsis lyrata HOM05D004382 ORTHO05D005181 2.0e-23 112.8 136 50.7
Potri.011G142300 Populus trichocarpa HOM05D004382 ORTHO05D005181 1.0e-22 110.5 136 49.3
Lsat_1_v5_gn_7_116120 Lactuca sativa HOM05D004382 ORTHO05D005181 1.3e-22 110.2 129 49.6
Dinv19628 Davidia involucrata HOM05D006828 ORTHO05D008312 2.3e-22 109.4 86 65.1
vmacro11652 Vaccinium macrocarpon HOM05D004382 ORTHO05D005181 1.1e-21 107.1 155 47.7
CBR_g30109 Chara braunii HOM05D000004 ORTHO05D000002 3.6e-20 102.1 72 68.1
Sabra11G0127700 Salix brachista HOM05D004382 ORTHO05D005181 1.4e-19 100.1 120 51.7
Eucgr.F03186 Eucalyptus grandis HOM05D004382 ORTHO05D005181 7.5e-18 94.4 89 57.3
Gohir.D01G024400 Gossypium hirsutum HOM05D004382 ORTHO05D005181 1.7e-17 93.2 67 67.2
PRCOL_00003342 Prasinoderma coloniale HOM05D004382 ORTHO05D005181 2.2e-17 92.8 135 44.4
PGSC0003DMG400002312 Solanum tuberosum HOM05D004382 ORTHO05D005181 2.0e-15 86.3 135 43.7
Cre06.g261000 Chlamydomonas reinhardtii HOM05D004382 ORTHO05D005181 7.8e-15 84.3 94 53.2
Cpa.g.c38697 Carica papaya HOM05D004382 ORTHO05D005181 1.0e-14 84.0 52 75.0
Sabra16G0296700 Salix brachista HOM05D004382 ORTHO05D005181 1.5e-13 80.1 140 40.7
MBI18_g37150_MAGBIO Magnolia biondii HOM05D004382 ORTHO05D005181 4.7e-12 75.1 121 43.8
MELO3C016181.2 Cucumis melo HOM05D004382 ORTHO05D005181 1.3e-09 67.0 72 54.2
PGR083G0343 Punica granatum HOM05D004382 ORTHO05D005181 2.2e-09 66.2 71 54.9
Cpa.g.c37194 Carica papaya HOM05D004382 ORTHO05D005181 4.1e-08 62.0 94 47.9
Haze_08525 Corylus avellana HOM05D004382 ORTHO05D005181 5.4e-08 61.6 48 62.5


User provided reference genes

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