Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c5_28450 Physcomitrium patens HOM05D005164 ORTHO05D006398 5.4e-218 760.8 402 100.0
Mapoly0072s0034 Marchantia polymorpha HOM05D005164 ORTHO05D006398 7.1e-202 707.2 402 91.8
AagrBONN_evm.TU.Sc2ySwM_117.2514 Anthoceros agrestis HOM05D005164 ORTHO05D006398 3.3e-191 671.8 399 87.0
SMO364G0673 Selaginella moellendorffii HOM05D005164 ORTHO05D006398 1.2e-180 636.7 399 83.0
ATR0733G076 Amborella trichopoda HOM05D005164 ORTHO05D006398 5.3e-173 611.3 398 79.9
Nn5g29540 Nelumbo nucifera HOM05D005164 ORTHO05D006398 1.6e-169 599.7 398 77.4
Ciclev10001386m.g Citrus clementina HOM05D005164 ORTHO05D006398 3.0e-168 595.5 398 76.4
COL.COLO4_26343 Corchorus olitorius HOM05D005164 ORTHO05D006398 3.0e-168 595.5 398 76.9
Thecc.08G024200 Theobroma cacao HOM05D005164 ORTHO05D006398 3.0e-168 595.5 398 76.9
QL02p007897 Quercus lobata HOM05D005164 ORTHO05D006398 5.2e-168 594.7 397 76.8
GSVIVG01009684001 Vitis vinifera HOM05D005164 ORTHO05D006398 5.2e-168 594.7 398 76.6
Gohir.A03G078200 Gossypium hirsutum HOM05D005164 ORTHO05D006398 6.7e-168 594.3 398 76.9
TAR376G0296 Trochodendron aralioides HOM05D005164 ORTHO05D006398 1.5e-167 593.2 398 76.6
Gohir.D02G094300 Gossypium hirsutum HOM05D005164 ORTHO05D006398 2.0e-167 592.8 398 76.6
Gorai.005G107200 Gossypium raimondii HOM05D005164 ORTHO05D006398 2.0e-167 592.8 398 76.6
Cfa018135 Carpinus fangiana HOM05D005164 ORTHO05D006398 4.4e-167 591.7 398 75.9
Duzib041G0411 Durio zibethinus HOM05D005164 ORTHO05D006398 7.5e-167 590.9 398 76.6
Lj4C784T1 Lonicera japonica HOM05D005164 ORTHO05D006398 9.7e-167 590.5 398 76.6
Aqoxy6G01049 Aquilegia oxysepala HOM05D005164 ORTHO05D006398 2.2e-166 589.3 398 76.6
Cc10_g03080 Coffea canephora HOM05D005164 ORTHO05D006398 4.8e-166 588.2 398 76.4
Potri.002G263200 Populus trichocarpa HOM05D005164 ORTHO05D006398 4.8e-166 588.2 398 75.6
RcHm_v2.0_Chr6g0300751 Rosa chinensis HOM05D005164 ORTHO05D006398 8.2e-166 587.4 398 75.9
Glyma.12G005400 Glycine max HOM05D005164 ORTHO05D006398 1.1e-165 587.0 398 75.6
MSTRG.24294 Avicennia marina HOM05D005164 ORTHO05D006398 1.8e-165 586.3 402 74.1
Sc02g0006310 Simmondsia chinensis HOM05D005164 ORTHO05D006398 3.1e-165 585.5 398 75.6
CiPaw.15G075600 Carya illinoinensis HOM05D005164 ORTHO05D006398 4.1e-165 585.1 398 75.6
Dinv36062 Davidia involucrata HOM05D005164 ORTHO05D006398 4.1e-165 585.1 398 75.4
Glyma.09G231100 Glycine max HOM05D005164 ORTHO05D006398 4.1e-165 585.1 398 75.1
Manes.18G028500 Manihot esculenta HOM05D005164 ORTHO05D006398 4.1e-165 585.1 398 75.4
Potri.014G180800 Populus trichocarpa HOM05D005164 ORTHO05D006398 4.1e-165 585.1 392 76.8
Solyc04g080160.3 Solanum lycopersicum HOM05D005164 ORTHO05D006398 7.0e-165 584.3 398 74.6
Sopen04g033750 Solanum pennellii HOM05D005164 ORTHO05D006398 7.0e-165 584.3 398 74.6
TWI56G0324 Tripterygium wilfordii HOM05D005164 ORTHO05D006398 7.0e-165 584.3 398 74.9
CDE02G4403 Ceratophyllum demersum HOM05D005164 ORTHO05D006398 9.1e-165 583.9 398 75.6
Phvul.011G006200 Phaseolus vulgaris HOM05D005164 ORTHO05D006398 9.1e-165 583.9 398 75.1
Ca_25003_v3 Cicer arietinum L. HOM05D005164 ORTHO05D006398 1.6e-164 583.2 398 74.9
Medtr0173s0030 Medicago truncatula HOM05D005164 ORTHO05D006398 1.6e-164 583.2 398 74.9
SalBow8G2733 Salvia bowleyana HOM05D005164 ORTHO05D006398 1.6e-164 583.2 398 74.4
MELO3C003848.2 Cucumis melo HOM05D005164 ORTHO05D006398 2.0e-164 582.8 398 75.6
CsaV3_3G045000 Cucumis sativus L. HOM05D005164 ORTHO05D006398 2.0e-164 582.8 398 75.6
PGSC0003DMG400005163 Solanum tuberosum HOM05D005164 ORTHO05D006398 2.0e-164 582.8 398 74.4
VMungo1127G0366 Vigna mungo HOM05D005164 ORTHO05D006398 3.5e-164 582.0 398 74.9
CiPaw.16G055400 Carya illinoinensis HOM05D005164 ORTHO05D006398 4.5e-164 581.6 398 74.6
Eucgr.F01909 Eucalyptus grandis HOM05D005164 ORTHO05D006398 5.9e-164 581.3 398 74.9
Gohir.A05G260000 Gossypium hirsutum HOM05D005164 ORTHO05D006398 5.9e-164 581.3 398 74.9
Lj3g0003260 Lotus japonicus HOM05D005164 ORTHO05D006398 5.9e-164 581.3 398 74.9
FvH4_2g40000 Fragaria vesca HOM05D005164 ORTHO05D006398 7.7e-164 580.9 399 75.7
FAN27G0257 Fragaria x ananassa HOM05D005164 ORTHO05D006398 7.7e-164 580.9 399 75.7
Peaxi162Scf00690g00117 Petunia axillaris HOM05D005164 ORTHO05D006398 7.7e-164 580.9 398 75.4
Os03g0197400 Oryza sativa ssp. japonica HOM05D005164 ORTHO05D006398 1.0e-163 580.5 400 75.2
CANSAT64G0480 Cannabis sativa HOM05D005164 ORTHO05D006398 2.2e-163 579.3 398 74.6
FAN15G2586 Fragaria x ananassa HOM05D005164 ORTHO05D006398 2.2e-163 579.3 399 75.4
THA.LOC104814156 Tarenaya hassleriana HOM05D005164 ORTHO05D006398 2.9e-163 578.9 399 74.4
HanXRQChr02g0040181 Helianthus annuus HOM05D005164 ORTHO05D006398 3.8e-163 578.6 398 74.4
Sed0001534 Sechium edule HOM05D005164 ORTHO05D006398 5.0e-163 578.2 396 75.8
Sed0021376 Sechium edule HOM05D005164 ORTHO05D006398 8.5e-163 577.4 398 75.1
EL10Ac8g20456 Beta vulgaris HOM05D005164 ORTHO05D006398 1.1e-162 577.0 398 74.1
Lsat_1_v5_gn_1_17561 Lactuca sativa HOM05D005164 ORTHO05D006398 1.5e-162 576.6 398 74.4
Psat3g167280 Pisum sativum HOM05D005164 ORTHO05D006398 2.5e-162 575.9 398 73.9
ECA247G1488 Erigeron canadensis HOM05D005164 ORTHO05D006398 3.2e-162 575.5 398 74.4
Gohir.D05G261900 Gossypium hirsutum HOM05D005164 ORTHO05D006398 3.2e-162 575.5 398 74.4
THA.LOC104822841 Tarenaya hassleriana HOM05D005164 ORTHO05D006398 3.2e-162 575.5 398 73.9
Gohir.A01G116500 Gossypium hirsutum HOM05D005164 ORTHO05D006398 7.2e-162 574.3 398 73.6
CANSAT25G0119 Cannabis sativa HOM05D005164 ORTHO05D006398 9.4e-162 573.9 403 73.9
AUR62014895 Chenopodium quinoa HOM05D005164 ORTHO05D006398 1.2e-161 573.5 398 74.6
BcaC06g31734 Brassica carinata HOM05D005164 ORTHO05D006398 1.6e-161 573.2 398 72.6
Gorai.002G128900 Gossypium raimondii HOM05D005164 ORTHO05D006398 1.6e-161 573.2 398 72.9
FAN20G1227 Fragaria x ananassa HOM05D005164 ORTHO05D006398 2.7e-161 572.4 399 74.4
DCAR_019523 Daucus carota HOM05D005164 ORTHO05D006398 4.7e-161 571.6 398 73.9
A06p48120 Brassica napus HOM05D005164 ORTHO05D006398 6.1e-161 571.2 398 72.4
BraA06t27681Z Brassica rapa HOM05D005164 ORTHO05D006398 6.1e-161 571.2 398 72.4
Gohir.D01G104900 Gossypium hirsutum HOM05D005164 ORTHO05D006398 8.0e-161 570.9 398 72.9
Gorai.009G273800 Gossypium raimondii HOM05D005164 ORTHO05D006398 8.0e-161 570.9 401 73.8
Thhalv10003436m.g Eutrema salsugineum HOM05D005164 ORTHO05D006398 1.0e-160 570.5 395 73.7
CAN.G1126.40 Capsicum annuum HOM05D005164 ORTHO05D006398 1.8e-160 569.7 398 73.1
PGR031G3751 Punica granatum HOM05D005164 ORTHO05D006398 1.8e-160 569.7 398 73.6
Carub.0008s0578 Capsella rubella HOM05D005164 ORTHO05D006398 4.0e-160 568.5 395 73.4
AT5G42970 Arabidopsis thaliana HOM05D005164 ORTHO05D006398 5.2e-160 568.2 395 72.9
BcaC02g10785 Brassica carinata HOM05D005164 ORTHO05D006398 5.2e-160 568.2 398 72.1
C04p25110 Brassica napus HOM05D005164 ORTHO05D006398 5.2e-160 568.2 398 72.1
BolC4t24015H Brassica oleracea HOM05D005164 ORTHO05D006398 5.2e-160 568.2 398 72.1
CDE01G0241 Ceratophyllum demersum HOM05D005164 ORTHO05D006398 6.8e-160 567.8 402 73.9
Hund21200 Selenicereus undatus HOM05D005164 ORTHO05D006398 6.8e-160 567.8 398 74.4
BcaB07g30597 Brassica carinata HOM05D005164 ORTHO05D006398 8.8e-160 567.4 398 72.1
CARHR181050 Cardamine hirsuta HOM05D005164 ORTHO05D006398 8.8e-160 567.4 395 73.2
CBR_g36268 Chara braunii HOM05D005164 ORTHO05D006398 2.0e-159 566.2 399 74.9
A02p27610 Brassica napus HOM05D005164 ORTHO05D006398 2.6e-159 565.8 398 72.1
BolC2t10406H Brassica oleracea HOM05D005164 ORTHO05D006398 2.6e-159 565.8 398 72.1
BraA02t07794Z Brassica rapa HOM05D005164 ORTHO05D006398 2.6e-159 565.8 398 72.1
Sp2g07720 Schrenkiella parvula HOM05D005164 ORTHO05D006398 2.6e-159 565.8 395 72.7
MD08G1033300 Malus domestica HOM05D005164 ORTHO05D006398 3.4e-159 565.5 398 73.1
AL8G17800 Arabidopsis lyrata HOM05D005164 ORTHO05D006398 1.1e-157 560.5 395 72.4
Migut.N00498 Erythranthe guttata HOM05D005164 ORTHO05D006398 1.1e-157 560.5 398 72.4
unitig_22.g6774 Utricularia gibba HOM05D005164 ORTHO05D006398 1.1e-157 560.5 402 71.9
BcaC03g16546 Brassica carinata HOM05D005164 ORTHO05D006398 1.4e-157 560.1 398 71.6
C02p43640 Brassica napus HOM05D005164 ORTHO05D006398 1.4e-157 560.1 398 71.6
MD15G1029900 Malus domestica HOM05D005164 ORTHO05D006398 3.1e-157 558.9 406 71.9
Aa31LG9G13090 Aethionema arabicum HOM05D005164 ORTHO05D006398 5.4e-157 558.1 398 72.1
PSO541G6137 Papaver somniferum HOM05D005164 ORTHO05D006398 9.1e-157 557.4 398 72.9
PSO675G3600 Papaver somniferum HOM05D005164 ORTHO05D006398 1.6e-156 556.6 398 72.9
Zm00001eb008060 Zea mays HOM05D005164 ORTHO05D006398 1.6e-156 556.6 440 67.5
AUR62031100 Chenopodium quinoa HOM05D005164 ORTHO05D006398 2.9e-155 552.4 398 72.9
ClCG05G019140 Citrullus lanatus HOM05D005164 ORTHO05D006398 2.1e-153 546.2 398 72.1
Haze_17990 Corylus avellana HOM05D005164 ORTHO05D006398 1.8e-152 543.1 501 60.3
Nitab4.5_0000110g0500 Nicotiana tabacum HOM05D005164 ORTHO05D006398 7.5e-151 537.7 398 70.6
Prupe.1G381600 Prunus persica HOM05D005164 ORTHO05D006398 3.7e-150 535.4 398 71.1
SGA_v2.0_scaffold326G48708 Striga asiatica HOM05D005164 ORTHO05D006398 3.7e-150 535.4 355 76.9
Hma1.2p1_0023F.1_g014900 Hydrangea macrophylla HOM05D005164 ORTHO05D006398 8.3e-150 534.3 490 60.0
Oeu009868.2 Olea europaea HOM05D005164 ORTHO05D006398 1.8e-149 533.1 477 61.4
Actinidia22558 Actinidia chinensis HOM05D005164 ORTHO05D006398 2.7e-148 529.3 368 74.2
MBI17_g39721_MAGBIO Magnolia biondii HOM05D005164 ORTHO05D006398 4.5e-148 528.5 431 66.8
Nitab4.5_0010187g0010 Nicotiana tabacum HOM05D005164 ORTHO05D006398 5.9e-148 528.1 398 70.1
Rhsim06G0035000 Rhododendron simsii HOM05D005164 ORTHO05D006398 1.7e-147 526.6 418 67.5
Atru.chr13.515 Acer truncatum HOM05D005164 ORTHO05D006398 2.3e-147 526.2 354 76.0
Sabra14G0141000 Salix brachista HOM05D005164 ORTHO05D006398 1.5e-146 523.5 437 65.4
Hma1.2p1_0469F.1_g159190 Hydrangea macrophylla HOM05D005164 ORTHO05D006398 4.0e-144 515.4 439 63.6
Manes.05G161900 Manihot esculenta HOM05D005164 ORTHO05D006398 1.3e-142 510.4 354 73.4
TPR.G3648 Trifolium pratense HOM05D005164 ORTHO05D006398 1.7e-139 500.0 387 68.0
HPP92_024905 Vanilla planifolia HOM05D005164 ORTHO05D006398 5.0e-131 471.9 347 72.6
vmacro21627 Vaccinium macrocarpon HOM05D005164 ORTHO05D006398 1.9e-125 453.4 398 62.3
Duzib093G0265 Durio zibethinus HOM05D005164 ORTHO05D006398 6.6e-123 444.9 398 61.1
CSS0020238 Camellia sinensis var. sinensis HOM05D005164 ORTHO05D006398 1.2e-116 424.1 270 80.7
Actinidia15313 Actinidia chinensis HOM05D005164 ORTHO05D006398 2.3e-115 419.9 419 56.6
CAN.G416.53 Capsicum annuum HOM05D005164 ORTHO05D006398 1.5e-114 417.2 308 73.1
Cre11.g478240 Chlamydomonas reinhardtii HOM05D005164 ORTHO05D006398 1.4e-112 410.6 388 55.4
MCO16G668 Micromonas commoda HOM05D005164 ORTHO05D006398 2.2e-110 403.3 402 53.7
RcHm_v2.0_Chr2g0166611 Rosa chinensis HOM05D005164 ORTHO05D006398 5.6e-98 362.1 229 81.2
PRCOL_00006114 Prasinoderma coloniale HOM05D005164 ORTHO05D006398 1.9e-90 337.0 402 48.5
SEGI_27147 Sequoiadendron giganteum HOM05D005164 ORTHO05D006398 1.2e-87 327.8 220 76.8
Cpa.g.sc64.68 Carica papaya HOM05D005164 ORTHO05D006398 3.0e-75 286.6 227 63.9
Sopen04g033730 Solanum pennellii HOM05D005164 ORTHO05D006398 6.3e-65 252.3 237 55.7
Cfa024373 Carpinus fangiana HOM05D005164 ORTHO05D006398 2.7e-60 236.9 317 44.2
GSVIVG01023193001 Vitis vinifera HOM05D005164 ORTHO05D006398 1.5e-53 214.5 150 72.0
GSVIVG01003780001 Vitis vinifera HOM05D005164 ORTHO05D006398 1.8e-51 207.6 150 69.3
MBI17_g35116_MAGBIO Magnolia biondii HOM05D005164 ORTHO05D006398 3.7e-49 199.9 185 64.3
Haze_26904 Corylus avellana HOM05D005164 ORTHO05D006398 2.8e-41 173.7 205 46.8
Carub.0004s0266 Capsella rubella HOM05D005164 ORTHO05D006398 7.7e-39 165.6 143 58.0
arahy.Tifrunner.gnm1.ann1.ABX6XB Arachis hypogaea HOM05D005164 ORTHO05D006398 8.6e-30 135.6 246 39.4
arahy.Tifrunner.gnm1.ann1.D3INNH Arachis hypogaea HOM05D005164 ORTHO05D006398 8.3e-25 119.0 95 61.1
arahy.Tifrunner.gnm1.ann1.R33BY8 Arachis hypogaea HOM05D005164 ORTHO05D006398 8.3e-25 119.0 95 61.1
TPR.G136 Trifolium pratense HOM05D005164 ORTHO05D006398 7.5e-10 69.3 49 65.3
Lj4g0024278 Lotus japonicus HOM05D001185 ORTHO05D003777 1.0e-06 58.9 307 26.1
arahy.Tifrunner.gnm1.ann1.ZV61IE Arachis hypogaea HOM05D005164 ORTHO05D006398 1.7e-06 58.2 76 42.1
PSO700G0370 Papaver somniferum HOM05D001185 ORTHO05D003777 1.7e-06 58.2 309 25.6
Eucgr.C01514 Eucalyptus grandis HOM05D001185 ORTHO05D003777 2.3e-06 57.8 305 25.9
ECA240G1489 Erigeron canadensis HOM05D001185 ORTHO05D003777 3.0e-06 57.4 354 24.6
PSO170G5175 Papaver somniferum HOM05D001185 ORTHO05D003777 3.0e-06 57.4 306 24.5
Lalb_Chr07g0184681 Lupinus albus HOM05D001185 ORTHO05D003777 3.9e-06 57.0 307 25.1
Sed0017410 Sechium edule HOM05D001185 ORTHO05D003777 3.9e-06 57.0 308 23.7
Lj2A569G64 Lonicera japonica HOM05D001185 ORTHO05D003777 5.1e-06 56.6 309 23.9
CDE06G2150 Ceratophyllum demersum HOM05D001185 ORTHO05D003777 6.6e-06 56.2 299 26.1
Gohir.A08G225600 Gossypium hirsutum HOM05D001185 ORTHO05D003777 6.6e-06 56.2 306 25.8
Gohir.D08G246000 Gossypium hirsutum HOM05D001185 ORTHO05D003777 6.6e-06 56.2 306 25.8
Potri.007G076900 Populus trichocarpa HOM05D001185 ORTHO05D003777 6.6e-06 56.2 308 26.0
SGA_v2.0_scaffold51G18767 Striga asiatica HOM05D001185 ORTHO05D003777 6.6e-06 56.2 308 24.7
TWI31G0616 Tripterygium wilfordii HOM05D001185 ORTHO05D003777 6.6e-06 56.2 343 24.5
Sed0021912 Sechium edule HOM05D001185 ORTHO05D003777 8.6e-06 55.8 308 24.4


User provided reference genes

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