Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c5_2520 Physcomitrium patens HOM05D004931 ORTHO05D006579 6.8e-173 610.5 302 100.0
Pp3c6_24540 Physcomitrium patens HOM05D004931 ORTHO05D006579 1.3e-118 430.3 254 85.0
Mapoly0005s0248 Marchantia polymorpha HOM05D004931 ORTHO05D006579 4.0e-104 382.1 270 69.6
PSO017G2176 Papaver somniferum HOM05D004931 ORTHO05D006579 2.2e-94 349.7 273 64.8
PSO478G0594 Papaver somniferum HOM05D004931 ORTHO05D006579 1.1e-93 347.4 273 64.8
AagrBONN_evm.TU.Sc2ySwM_368.2426 Anthoceros agrestis HOM05D004931 ORTHO05D006579 1.7e-91 340.1 243 70.0
AUR62005713 Chenopodium quinoa HOM05D004931 ORTHO05D006579 1.7e-91 340.1 274 61.3
ECA238G3692 Erigeron canadensis HOM05D004931 ORTHO05D006579 4.2e-90 335.5 283 59.0
Actinidia34703 Actinidia chinensis HOM05D004931 ORTHO05D006579 7.2e-90 334.7 273 60.4
CiPaw.05G101400 Carya illinoinensis HOM05D004931 ORTHO05D006579 7.2e-90 334.7 270 62.6
Aqoxy5G03136 Aquilegia oxysepala HOM05D004931 ORTHO05D006579 9.4e-90 334.3 273 61.9
Migut.K01057 Erythranthe guttata HOM05D004931 ORTHO05D006579 9.4e-90 334.3 276 60.1
GSVIVG01001087001 Vitis vinifera HOM05D004931 ORTHO05D006579 1.2e-89 334.0 274 62.4
AUR62028841 Chenopodium quinoa HOM05D004931 ORTHO05D006579 1.6e-89 333.6 260 62.7
TAR374G0634 Trochodendron aralioides HOM05D004931 ORTHO05D006579 3.6e-89 332.4 272 62.5
Manes.08G101500 Manihot esculenta HOM05D004931 ORTHO05D006579 8.0e-89 331.3 273 59.3
TAR622G0753 Trochodendron aralioides HOM05D004931 ORTHO05D006579 8.0e-89 331.3 271 62.0
SMO358G0085 Selaginella moellendorffii HOM05D004931 ORTHO05D006579 1.0e-88 330.9 243 67.1
Dinv06619 Davidia involucrata HOM05D004931 ORTHO05D006579 3.0e-88 329.3 273 60.1
COL.COLO4_21767 Corchorus olitorius HOM05D004931 ORTHO05D006579 5.2e-88 328.6 271 60.1
Manes.09G188000 Manihot esculenta HOM05D004931 ORTHO05D006579 5.2e-88 328.6 273 59.0
TWI36G0173 Tripterygium wilfordii HOM05D004931 ORTHO05D006579 5.2e-88 328.6 277 60.6
Gohir.A03G152300 Gossypium hirsutum HOM05D004931 ORTHO05D006579 6.8e-88 328.2 271 60.9
MD00G1177400 Malus domestica HOM05D004931 ORTHO05D006579 6.8e-88 328.2 263 62.4
Nn3g16276 Nelumbo nucifera HOM05D004931 ORTHO05D006579 6.8e-88 328.2 275 61.5
Os08g0537800 Oryza sativa ssp. japonica HOM05D004931 ORTHO05D006579 6.8e-88 328.2 257 63.0
Prupe.1G215300 Prunus persica HOM05D004931 ORTHO05D006579 6.8e-88 328.2 270 60.4
CSS0024647 Camellia sinensis var. sinensis HOM05D004931 ORTHO05D006579 1.5e-87 327.0 271 60.5
Cc11_g15020 Coffea canephora HOM05D004931 ORTHO05D006579 2.0e-87 326.6 273 60.8
Gohir.D02G175400 Gossypium hirsutum HOM05D004931 ORTHO05D006579 2.0e-87 326.6 271 60.5
EL10Ac6g13609 Beta vulgaris HOM05D004931 ORTHO05D006579 2.6e-87 326.2 268 61.2
FvH4_4g22670 Fragaria vesca HOM05D004931 ORTHO05D006579 2.6e-87 326.2 270 60.4
Haze_12500 Corylus avellana HOM05D004931 ORTHO05D006579 3.4e-87 325.9 273 60.4
HanXRQChr17g0559151 Helianthus annuus HOM05D004931 ORTHO05D006579 4.4e-87 325.5 283 57.6
Thecc.02G192700 Theobroma cacao HOM05D004931 ORTHO05D006579 4.4e-87 325.5 271 60.1
Ciclev10005352m.g Citrus clementina HOM05D004931 ORTHO05D006579 7.5e-87 324.7 271 60.1
Cpa.g.sc38.82 Carica papaya HOM05D004931 ORTHO05D006579 1.3e-86 323.9 267 61.0
Cfa009447 Carpinus fangiana HOM05D004931 ORTHO05D006579 1.3e-86 323.9 270 60.0
Sed0000722 Sechium edule HOM05D004931 ORTHO05D006579 1.3e-86 323.9 272 59.6
Gorai.005G197000 Gossypium raimondii HOM05D004931 ORTHO05D006579 1.7e-86 323.6 271 60.1
MELO3C017814.2 Cucumis melo HOM05D004931 ORTHO05D006579 2.2e-86 323.2 270 59.6
CsaV3_4G002250 Cucumis sativus L. HOM05D004931 ORTHO05D006579 2.8e-86 322.8 270 60.0
SEGI_13679 Sequoiadendron giganteum HOM05D004931 ORTHO05D006579 3.7e-86 322.4 270 60.4
SGA_v2.0_scaffold80G25951 Striga asiatica HOM05D004931 ORTHO05D006579 4.9e-86 322.0 287 58.2
SGA_v2.0_scaffold81G25976 Striga asiatica HOM05D004931 ORTHO05D006579 4.9e-86 322.0 276 60.9
MSTRG.455 Avicennia marina HOM05D004931 ORTHO05D006579 8.3e-86 321.2 271 58.3
Sp1g24310 Schrenkiella parvula HOM05D004931 ORTHO05D006579 8.3e-86 321.2 263 62.0
Atru.chr12.1413 Acer truncatum HOM05D004931 ORTHO05D006579 1.1e-85 320.9 271 59.0
arahy.Tifrunner.gnm1.ann1.BF7HNV Arachis hypogaea HOM05D004931 ORTHO05D006579 1.1e-85 320.9 270 60.4
CANSAT01G2308 Cannabis sativa HOM05D004931 ORTHO05D006579 1.1e-85 320.9 280 57.9
Duzib248G0794 Durio zibethinus HOM05D004931 ORTHO05D006579 1.1e-85 320.9 261 61.3
Thhalv10008031m.g Eutrema salsugineum HOM05D004931 ORTHO05D006579 1.1e-85 320.9 255 63.1
PGR102G0149 Punica granatum HOM05D004931 ORTHO05D006579 1.4e-85 320.5 272 57.7
Sc14g0009240 Simmondsia chinensis HOM05D004931 ORTHO05D006579 1.4e-85 320.5 266 61.3
QL03p049374 Quercus lobata HOM05D004931 ORTHO05D006579 1.8e-85 320.1 310 55.2
Sopen04g017340 Solanum pennellii HOM05D004931 ORTHO05D006579 1.8e-85 320.1 271 60.1
arahy.Tifrunner.gnm1.ann1.Q671IP Arachis hypogaea HOM05D004931 ORTHO05D006579 2.4e-85 319.7 273 59.7
Solyc04g045480.3 Solanum lycopersicum HOM05D004931 ORTHO05D006579 2.4e-85 319.7 271 60.1
Lsat_1_v5_gn_2_17061 Lactuca sativa HOM05D004931 ORTHO05D006579 4.1e-85 318.9 283 56.9
THA.LOC104814207 Tarenaya hassleriana HOM05D004931 ORTHO05D006579 4.1e-85 318.9 279 58.4
AagrBONN_evm.TU.Sc2ySwM_26.3 Anthoceros agrestis HOM05D004931 ORTHO05D006579 7.0e-85 318.2 220 71.4
unitig_8.g2895 Utricularia gibba HOM05D004931 ORTHO05D006579 7.0e-85 318.2 268 59.0
BcaB03g12136 Brassica carinata HOM05D004931 ORTHO05D006579 9.1e-85 317.8 254 62.2
MD13G1130400 Malus domestica HOM05D004931 ORTHO05D006579 9.1e-85 317.8 271 59.0
Potri.003G162600 Populus trichocarpa HOM05D004931 ORTHO05D006579 9.1e-85 317.8 250 64.0
Ca_00224_v3 Cicer arietinum L. HOM05D004931 ORTHO05D006579 2.0e-84 316.6 273 59.0
SalBow2G3164 Salvia bowleyana HOM05D004931 ORTHO05D006579 2.0e-84 316.6 300 55.3
HPP92_011736 Vanilla planifolia HOM05D004931 ORTHO05D006579 4.5e-84 315.5 275 59.3
Aa31sc45G20 Aethionema arabicum HOM05D004931 ORTHO05D006579 5.9e-84 315.1 260 60.0
Lj6g0004184 Lotus japonicus HOM05D004931 ORTHO05D006579 5.9e-84 315.1 279 58.4
Medtr2g011420 Medicago truncatula HOM05D004931 ORTHO05D006579 7.7e-84 314.7 270 59.3
VMungo0540G0694 Vigna mungo HOM05D004931 ORTHO05D006579 7.7e-84 314.7 289 57.8
AL1G41640 Arabidopsis lyrata HOM05D004931 ORTHO05D006579 1.0e-83 314.3 257 61.1
Glyma.15G065800 Glycine max HOM05D004931 ORTHO05D006579 1.0e-83 314.3 289 57.1
CARHR027590 Cardamine hirsuta HOM05D004931 ORTHO05D006579 1.7e-83 313.5 256 61.7
Psat1g210240 Pisum sativum HOM05D004931 ORTHO05D006579 1.7e-83 313.5 279 58.8
TPR.G19613 Trifolium pratense HOM05D004931 ORTHO05D006579 1.7e-83 313.5 270 59.3
Glyma.13G248100 Glycine max HOM05D004931 ORTHO05D006579 2.3e-83 313.2 287 58.2
Carub.0001s2655 Capsella rubella HOM05D004931 ORTHO05D006579 2.9e-83 312.8 255 61.2
Phvul.006G193900 Phaseolus vulgaris HOM05D004931 ORTHO05D006579 3.8e-83 312.4 289 57.4
Ah.02g131420 Amaranthus hybridus HOM05D004931 ORTHO05D006579 5.0e-83 312.0 289 56.1
BcaC01g00008 Brassica carinata HOM05D004931 ORTHO05D006579 5.0e-83 312.0 255 60.4
AT1G28120 Arabidopsis thaliana HOM05D004931 ORTHO05D006579 6.6e-83 311.6 253 61.3
BolC3t19725H Brassica oleracea HOM05D004931 ORTHO05D006579 8.6e-83 311.2 255 60.4
ATR0582G144 Amborella trichopoda HOM05D004931 ORTHO05D006579 1.1e-82 310.8 263 58.9
Lj6A838G27 Lonicera japonica HOM05D004931 ORTHO05D006579 5.6e-82 308.5 250 62.0
Potri.001G067400 Populus trichocarpa HOM05D004931 ORTHO05D006579 5.6e-82 308.5 253 60.5
vmacro10419 Vaccinium macrocarpon HOM05D004931 ORTHO05D006579 5.6e-82 308.5 290 56.2
RcHm_v2.0_Chr4g0428911 Rosa chinensis HOM05D004931 ORTHO05D006579 2.3e-80 303.1 245 62.0
Nitab4.5_0007183g0010 Nicotiana tabacum HOM05D004931 ORTHO05D006579 3.0e-80 302.8 275 57.1
FAN17G1056 Fragaria x ananassa HOM05D004931 ORTHO05D006579 5.2e-80 302.0 240 61.7
BcaB03g13953 Brassica carinata HOM05D004931 ORTHO05D006579 6.8e-80 301.6 254 61.4
CDE05G1203 Ceratophyllum demersum HOM05D004931 ORTHO05D006579 3.4e-79 299.3 275 55.3
C03p74760 Brassica napus HOM05D004931 ORTHO05D006579 4.4e-79 298.9 280 55.4
A08p25870 Brassica napus HOM05D004931 ORTHO05D006579 1.7e-78 297.0 279 55.2
CDE05G3195 Ceratophyllum demersum HOM05D004931 ORTHO05D006579 1.7e-78 297.0 275 55.3
DCAR_024966 Daucus carota HOM05D004931 ORTHO05D006579 1.4e-77 293.9 272 54.8
Rhsim09G0128100 Rhododendron simsii HOM05D004931 ORTHO05D006579 4.1e-77 292.4 326 49.7
ClCG07G011910 Citrullus lanatus HOM05D004931 ORTHO05D006579 1.6e-76 290.4 273 55.7
CAN.G465.9 Capsicum annuum HOM05D004931 ORTHO05D006579 7.8e-76 288.1 313 50.2
HPP92_011677 Vanilla planifolia HOM05D004931 ORTHO05D006579 7.8e-76 288.1 239 60.7
BolC7t42231H Brassica oleracea HOM05D004931 ORTHO05D006579 3.9e-75 285.8 270 56.7
BraA08t34541Z Brassica rapa HOM05D004931 ORTHO05D006579 5.0e-75 285.4 279 54.1
FAN07G1868 Fragaria x ananassa HOM05D004931 ORTHO05D006579 2.5e-74 283.1 252 57.1
C07p17280 Brassica napus HOM05D004931 ORTHO05D006579 7.3e-74 281.6 270 56.3
Zm00001eb175560 Zea mays HOM05D004931 ORTHO05D006579 3.1e-72 276.2 259 54.8
Peaxi162Scf00128g01757 Petunia axillaris HOM05D004931 ORTHO05D006579 7.5e-71 271.6 247 57.1
BcaC06g35334 Brassica carinata HOM05D004931 ORTHO05D006579 2.2e-70 270.0 270 54.4
Hund26708 Selenicereus undatus HOM05D004931 ORTHO05D006579 2.9e-70 269.6 252 55.2
FAN12G1488 Fragaria x ananassa HOM05D004931 ORTHO05D006579 6.4e-70 268.5 240 56.7
MBI07_g35974_MAGBIO Magnolia biondii HOM05D004931 ORTHO05D006579 5.4e-69 265.4 272 52.9
Nitab4.5_0001408g0040 Nicotiana tabacum HOM05D004931 ORTHO05D006579 1.6e-68 263.8 232 59.1
MBI10_g42797_MAGBIO Magnolia biondii HOM05D004931 ORTHO05D006579 4.7e-65 252.3 244 52.0
Sabra01G0046800 Salix brachista HOM05D004931 ORTHO05D006579 6.0e-60 235.3 258 49.6
Lalb_Chr15g0090151 Lupinus albus HOM05D004931 ORTHO05D006579 5.1e-59 232.3 200 60.0
Sed0016914 Sechium edule HOM05D004931 ORTHO05D006579 7.3e-58 228.4 188 60.1
Cre10.g441500 Chlamydomonas reinhardtii HOM05D004931 ORTHO05D006579 1.2e-57 227.6 295 44.4
Actinidia31350 Actinidia chinensis HOM05D004931 ORTHO05D006579 3.1e-56 223.0 273 47.3
Dinv02758 Davidia involucrata HOM05D004931 ORTHO05D006579 4.4e-55 219.2 187 56.1
Duzib132G0410 Durio zibethinus HOM05D004931 ORTHO05D006579 1.2e-52 211.1 221 50.2
PSO832G0491 Papaver somniferum HOM05D004931 ORTHO05D006579 1.2e-49 201.1 226 50.4
PRCOL_00001027 Prasinoderma coloniale HOM05D004931 ORTHO05D006579 1.3e-46 191.0 260 43.5
CBR_g45420 Chara braunii HOM05D000019 ORTHO05D000048 1.0e-43 181.4 145 64.8
Haze_27431 Corylus avellana HOM05D004931 ORTHO05D006579 5.1e-43 179.1 263 37.3
A07p11470 Brassica napus HOM05D004931 ORTHO05D006579 1.5e-42 177.6 157 59.2
BraA07t28936Z Brassica rapa HOM05D004931 ORTHO05D006579 1.5e-42 177.6 157 59.2
Eucgr.B03557 Eucalyptus grandis HOM05D004931 ORTHO05D006579 1.2e-36 157.9 115 67.8
PGSC0003DMG402006689 Solanum tuberosum HOM05D004931 ORTHO05D006579 4.6e-36 156.0 118 66.9
Lalb_Chr18g0060061 Lupinus albus HOM05D004931 ORTHO05D006579 1.9e-34 150.6 127 61.4
PGSC0003DMG401006689 Solanum tuberosum HOM05D004931 ORTHO05D006579 8.4e-30 135.2 124 55.6
PSO170G5257 Papaver somniferum HOM05D004650 ORTHO05D005715 2.1e-25 120.6 145 46.9
Sc17g0004710 Simmondsia chinensis HOM05D004931 ORTHO05D006579 9.0e-24 115.2 91 64.8
RcHm_v2.0_Chr7g0205601 Rosa chinensis HOM05D004931 ORTHO05D006579 2.0e-23 114.0 85 61.2
Os02g0521600 Oryza sativa ssp. japonica HOM05D004931 ORTHO05D037234 8.7e-19 98.6 256 31.2
TPR.G382 Trifolium pratense HOM05D004931 ORTHO05D006579 4.3e-18 96.3 80 56.2
Zm00001eb242070 Zea mays HOM05D004931 ORTHO05D037234 5.7e-18 95.9 273 29.7
Os04g0652600 Oryza sativa ssp. japonica HOM05D004931 ORTHO05D299584 9.0e-16 88.6 219 29.2
Zm00001eb406040 Zea mays HOM05D004931 ORTHO05D006579 2.0e-15 87.4 224 27.7
TPR.G19900 Trifolium pratense HOM05D004931 ORTHO05D006579 1.1e-13 81.6 80 51.2
ECA238G1930 Erigeron canadensis HOM05D000406 ORTHO05D006918 1.4e-13 81.3 55 65.5
Zm00001eb037020 Zea mays HOM05D004931 ORTHO05D006579 4.6e-12 76.3 61 54.1
Zm00001eb406050 Zea mays HOM05D004931 ORTHO05D444756 4.6e-12 76.3 208 26.9
Cre06.g253755 Chlamydomonas reinhardtii HOM05D018811 ORTHO05D145199 1.3e-11 74.7 338 24.6
Cre06.g253459 Chlamydomonas reinhardtii HOM05D018811 ORTHO05D146359 1.8e-11 74.3 338 24.6
BolC2t10441H Brassica oleracea HOM05D004931 ORTHO05D027277 4.3e-10 69.7 68 55.9
C01p27720 Brassica napus HOM05D004931 ORTHO05D027277 2.8e-09 67.0 74 51.4
Solyc03g059395.1 Solanum lycopersicum HOM05D004931 ORTHO05D006579 4.1e-08 63.2 81 42.0
TPR.G399 Trifolium pratense HOM05D004931 ORTHO05D006579 1.5e-07 61.2 78 43.6
BcaC03g16580 Brassica carinata HOM05D004931 ORTHO05D027277 7.7e-07 58.9 52 61.5
Cre06.g253566 Chlamydomonas reinhardtii HOM05D018811 ORTHO05D138934 8.5e-06 55.5 116 32.8
Cre06.g253851 Chlamydomonas reinhardtii HOM05D018811 ORTHO05D145445 8.5e-06 55.5 116 32.8


User provided reference genes

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