Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c5_2190 Physcomitrium patens HOM05D004324 ORTHO05D004840 1.0e-207 726.5 363 100.0
Mapoly0082s0038 Marchantia polymorpha HOM05D004324 ORTHO05D004840 4.7e-144 515.0 331 76.1
SMO367G0287 Selaginella moellendorffii HOM05D004324 ORTHO05D004840 8.0e-144 514.2 312 79.5
SEGI_09298 Sequoiadendron giganteum HOM05D004324 ORTHO05D004840 6.8e-143 511.1 312 80.1
Nn1g01122 Nelumbo nucifera HOM05D004324 ORTHO05D004840 9.8e-142 507.3 313 78.6
Aqoxy7G00682 Aquilegia oxysepala HOM05D004324 ORTHO05D004840 1.8e-140 503.1 313 77.3
ATR0665G432 Amborella trichopoda HOM05D004324 ORTHO05D004840 2.4e-140 502.7 313 78.0
MSTRG.17174 Avicennia marina HOM05D004324 ORTHO05D004840 2.4e-140 502.7 313 78.0
PSO478G0881 Papaver somniferum HOM05D004324 ORTHO05D004840 9.2e-140 500.7 313 76.7
PSO782G5694 Papaver somniferum HOM05D004324 ORTHO05D004840 9.2e-140 500.7 313 76.7
GSVIVG01027662001 Vitis vinifera HOM05D004324 ORTHO05D004840 9.2e-140 500.7 313 77.3
Dinv32365 Davidia involucrata HOM05D004324 ORTHO05D004840 1.2e-139 500.4 313 78.3
FAN01G0081 Fragaria x ananassa HOM05D004324 ORTHO05D004840 2.7e-139 499.2 312 77.2
CANSAT56G0022 Cannabis sativa HOM05D004324 ORTHO05D004840 3.5e-139 498.8 313 77.0
Migut.B01616 Erythranthe guttata HOM05D004324 ORTHO05D004840 3.5e-139 498.8 313 77.3
Sed0016777 Sechium edule HOM05D004324 ORTHO05D004840 5.9e-139 498.0 313 77.0
FAN03G2758 Fragaria x ananassa HOM05D004324 ORTHO05D004840 7.8e-139 497.7 312 76.9
FAN06G1729 Fragaria x ananassa HOM05D004324 ORTHO05D004840 7.8e-139 497.7 312 76.9
FAN06G4220 Fragaria x ananassa HOM05D004324 ORTHO05D004840 7.8e-139 497.7 312 76.9
Actinidia12245 Actinidia chinensis HOM05D004324 ORTHO05D004840 1.3e-138 496.9 313 77.0
TAR375G0703 Trochodendron aralioides HOM05D004324 ORTHO05D004840 1.3e-138 496.9 313 77.3
EL10Ac1g00868 Beta vulgaris HOM05D004324 ORTHO05D004840 1.7e-138 496.5 313 77.3
BcaC01g04748 Brassica carinata HOM05D004324 ORTHO05D004840 1.7e-138 496.5 329 73.9
Thhalv10028793m.g Eutrema salsugineum HOM05D004324 ORTHO05D004840 1.7e-138 496.5 323 75.5
Manes.05G047100 Manihot esculenta HOM05D004324 ORTHO05D004840 1.7e-138 496.5 313 77.3
RcHm_v2.0_Chr1g0349771 Rosa chinensis HOM05D004324 ORTHO05D004840 1.7e-138 496.5 312 76.9
TWI59G0845 Tripterygium wilfordii HOM05D004324 ORTHO05D004840 1.7e-138 496.5 313 76.4
BraA03t12035Z Brassica rapa HOM05D004324 ORTHO05D004840 2.3e-138 496.1 329 73.6
Cpa.g.sc145.18 Carica papaya HOM05D004324 ORTHO05D004840 2.3e-138 496.1 313 77.3
Thecc.08G173500 Theobroma cacao HOM05D004324 ORTHO05D004840 2.3e-138 496.1 313 77.3
A03p28290 Brassica napus HOM05D004324 ORTHO05D004840 2.9e-138 495.7 329 73.6
C03p34220 Brassica napus HOM05D004324 ORTHO05D004840 2.9e-138 495.7 329 73.9
Solyc01g091160.4 Solanum lycopersicum HOM05D004324 ORTHO05D004840 5.0e-138 495.0 313 75.7
Sopen01g036910 Solanum pennellii HOM05D004324 ORTHO05D004840 5.0e-138 495.0 313 75.7
BolC3t15731H Brassica oleracea HOM05D004324 ORTHO05D004840 6.6e-138 494.6 329 73.6
Ciclev10021006m.g Citrus clementina HOM05D004324 ORTHO05D004840 6.6e-138 494.6 313 76.0
CDE04G0300 Ceratophyllum demersum HOM05D004324 ORTHO05D004840 8.6e-138 494.2 313 77.0
CsaV3_6G006290 Cucumis sativus L. HOM05D004324 ORTHO05D004840 8.6e-138 494.2 313 76.7
Manes.01G267300 Manihot esculenta HOM05D004324 ORTHO05D004840 8.6e-138 494.2 313 77.0
SalBow5G2819 Salvia bowleyana HOM05D004324 ORTHO05D004840 8.6e-138 494.2 313 76.4
Nitab4.5_0000457g0100 Nicotiana tabacum HOM05D004324 ORTHO05D004840 1.1e-137 493.8 313 75.1
Os04g0106300 Oryza sativa ssp. japonica HOM05D004324 ORTHO05D004840 1.1e-137 493.8 313 76.7
Sp6g08900 Schrenkiella parvula HOM05D004324 ORTHO05D004840 1.1e-137 493.8 313 76.0
AL6G41660 Arabidopsis lyrata HOM05D004324 ORTHO05D004840 2.5e-137 492.7 313 76.7
vmacro13417 Vaccinium macrocarpon HOM05D004324 ORTHO05D004840 2.5e-137 492.7 313 75.7
Nitab4.5_0010616g0050 Nicotiana tabacum HOM05D004324 ORTHO05D004840 3.3e-137 492.3 313 74.8
QL08p052832 Quercus lobata HOM05D004324 ORTHO05D004840 3.3e-137 492.3 313 76.7
MD07G1119200 Malus domestica HOM05D004324 ORTHO05D004840 4.3e-137 491.9 313 76.4
Peaxi162Scf00013g03018 Petunia axillaris HOM05D004324 ORTHO05D004840 5.6e-137 491.5 313 75.4
AT4G08900 Arabidopsis thaliana HOM05D004324 ORTHO05D004840 7.3e-137 491.1 313 76.4
CARHR259850 Cardamine hirsuta HOM05D004324 ORTHO05D004840 9.5e-137 490.7 313 76.4
Cc02_g24110 Coffea canephora HOM05D004324 ORTHO05D004840 9.5e-137 490.7 313 76.0
COL.COLO4_24610 Corchorus olitorius HOM05D004324 ORTHO05D004840 9.5e-137 490.7 313 76.0
Hma1.2p1_0442F.1_g153860 Hydrangea macrophylla HOM05D004324 ORTHO05D004840 9.5e-137 490.7 312 76.0
PGR042G0702 Punica granatum HOM05D004324 ORTHO05D004840 9.5e-137 490.7 313 75.7
BcaB01g02843 Brassica carinata HOM05D004324 ORTHO05D004840 1.2e-136 490.3 325 74.2
Carub.0006s2738 Capsella rubella HOM05D004324 ORTHO05D004840 1.2e-136 490.3 313 76.4
CAN.G388.33 Capsicum annuum HOM05D004324 ORTHO05D004840 1.6e-136 490.0 313 75.4
Gohir.D05G254400 Gossypium hirsutum HOM05D004324 ORTHO05D004840 1.6e-136 490.0 313 76.4
ClCG06G000480 Citrullus lanatus HOM05D004324 ORTHO05D004840 2.1e-136 489.6 313 75.7
Eucgr.E01445 Eucalyptus grandis HOM05D004324 ORTHO05D004840 2.1e-136 489.6 313 76.7
HanXRQChr16g0519961 Helianthus annuus HOM05D004324 ORTHO05D004840 2.1e-136 489.6 313 76.7
Lalb_Chr12g0208141 Lupinus albus HOM05D004324 ORTHO05D004840 2.1e-136 489.6 312 77.2
Potri.002G146200 Populus trichocarpa HOM05D004324 ORTHO05D004840 2.1e-136 489.6 313 75.7
Atru.chr5.282 Acer truncatum HOM05D004324 ORTHO05D004840 2.8e-136 489.2 313 77.0
Ca_19938_v3 Cicer arietinum L. HOM05D004324 ORTHO05D004840 2.8e-136 489.2 313 76.7
Duzib177G0253 Durio zibethinus HOM05D004324 ORTHO05D004840 2.8e-136 489.2 313 76.0
Lsat_1_v5_gn_4_43080 Lactuca sativa HOM05D004324 ORTHO05D004840 2.8e-136 489.2 313 76.0
Gorai.009G265900 Gossypium raimondii HOM05D004324 ORTHO05D004840 3.6e-136 488.8 313 76.0
Aa31LG9G14610 Aethionema arabicum HOM05D004324 ORTHO05D004840 4.7e-136 488.4 313 75.1
CSS0002473 Camellia sinensis var. sinensis HOM05D004324 ORTHO05D004840 4.7e-136 488.4 319 74.3
RcHm_v2.0_Chr1g0349751 Rosa chinensis HOM05D004324 ORTHO05D004840 4.7e-136 488.4 319 74.6
Sc26g0001240 Simmondsia chinensis HOM05D004324 ORTHO05D004840 4.7e-136 488.4 313 76.7
Duzib268G1605 Durio zibethinus HOM05D004324 ORTHO05D004840 6.1e-136 488.0 313 76.0
Potri.014G067700 Populus trichocarpa HOM05D004324 ORTHO05D004840 6.1e-136 488.0 313 75.4
Prupe.2G142300 Prunus persica HOM05D004324 ORTHO05D004840 6.1e-136 488.0 313 75.4
Phvul.010G081600 Phaseolus vulgaris HOM05D004324 ORTHO05D004840 8.0e-136 487.6 313 77.0
THA.LOC104826515 Tarenaya hassleriana HOM05D004324 ORTHO05D004840 8.0e-136 487.6 313 76.0
AUR62004190 Chenopodium quinoa HOM05D004324 ORTHO05D004840 1.0e-135 487.3 312 75.0
SHI13535 Sapria himalayana HOM05D004324 ORTHO05D004840 1.0e-135 487.3 313 76.7
ECA234G2725 Erigeron canadensis HOM05D004324 ORTHO05D004840 1.8e-135 486.5 313 75.7
Lj3g0015076 Lotus japonicus HOM05D004324 ORTHO05D004840 1.8e-135 486.5 313 76.0
AUR62013655 Chenopodium quinoa HOM05D004324 ORTHO05D004840 2.3e-135 486.1 312 75.0
CSS0015452 Camellia sinensis var. sinensis HOM05D004324 ORTHO05D004840 3.0e-135 485.7 313 75.1
CSS0042374 Camellia sinensis var. sinensis HOM05D004324 ORTHO05D004840 3.0e-135 485.7 313 75.1
Psat0s3070g0160 Pisum sativum HOM05D004324 ORTHO05D004840 3.0e-135 485.7 313 76.7
Rhsim07G0029000 Rhododendron simsii HOM05D004324 ORTHO05D004840 3.0e-135 485.7 336 71.1
DCAR_008551 Daucus carota HOM05D004324 ORTHO05D004840 4.0e-135 485.3 303 77.2
unitig_899.g15094 Utricularia gibba HOM05D004324 ORTHO05D004840 4.0e-135 485.3 303 77.9
SGA_v2.0_scaffold153G36989 Striga asiatica HOM05D004324 ORTHO05D004840 5.2e-135 485.0 313 75.7
CiPaw.01G263900 Carya illinoinensis HOM05D004324 ORTHO05D004840 6.8e-135 484.6 313 75.7
Oeu055504.4 Olea europaea HOM05D004324 ORTHO05D004840 6.8e-135 484.6 350 70.0
Sopen01g036920 Solanum pennellii HOM05D004324 ORTHO05D004840 6.8e-135 484.6 313 75.7
TPR.G7599 Trifolium pratense HOM05D004324 ORTHO05D004840 6.8e-135 484.6 313 76.0
Solyc01g091170.3 Solanum lycopersicum HOM05D004324 ORTHO05D004840 8.9e-135 484.2 313 75.7
Glyma.01G140200 Glycine max HOM05D004324 ORTHO05D004840 1.5e-134 483.4 313 76.0
Glyma.17G131300 Glycine max HOM05D004324 ORTHO05D004840 3.4e-134 482.3 313 76.4
Thecc.08G173700 Theobroma cacao HOM05D004324 ORTHO05D004840 3.4e-134 482.3 313 73.5
HPP92_007375 Vanilla planifolia HOM05D004324 ORTHO05D004840 3.4e-134 482.3 313 74.4
Sc26g0001250 Simmondsia chinensis HOM05D004324 ORTHO05D004840 2.2e-133 479.6 326 73.6
Hund27368 Selenicereus undatus HOM05D004324 ORTHO05D004840 4.9e-133 478.4 303 76.2
CiPaw.02G169300 Carya illinoinensis HOM05D004324 ORTHO05D004840 2.4e-132 476.1 303 76.2
Glyma.03G028000 Glycine max HOM05D004324 ORTHO05D004840 5.4e-132 474.9 313 73.2
Lj3g0008609 Lotus japonicus HOM05D004324 ORTHO05D004840 2.7e-131 472.6 313 72.8
Carub.0006s2736 Capsella rubella HOM05D004324 ORTHO05D004840 7.8e-131 471.1 335 69.0
Lj3g0002034 Lotus japonicus HOM05D004324 ORTHO05D004840 1.0e-130 470.7 313 72.2
AT4G08870 Arabidopsis thaliana HOM05D004324 ORTHO05D004840 1.3e-130 470.3 335 69.3
CBR_g50887 Chara braunii HOM05D004324 ORTHO05D004840 1.9e-129 466.5 336 68.8
arahy.Tifrunner.gnm1.ann1.2VF8XD Arachis hypogaea HOM05D004324 ORTHO05D004840 7.3e-129 464.5 345 69.0
Lj3g0012371 Lotus japonicus HOM05D004324 ORTHO05D004840 3.1e-127 459.1 328 68.6
Haze_16793 Corylus avellana HOM05D004324 ORTHO05D004840 8.9e-127 457.6 376 63.6
Medtr4g024960 Medicago truncatula HOM05D004324 ORTHO05D004840 8.9e-127 457.6 313 71.2
HanXRQChr16g0519941 Helianthus annuus HOM05D004324 ORTHO05D004840 9.8e-126 454.1 323 67.8
arahy.Tifrunner.gnm1.ann1.J6F3FE Arachis hypogaea HOM05D004324 ORTHO05D004840 2.2e-125 453.0 369 64.8
TPR.G7597 Trifolium pratense HOM05D004324 ORTHO05D004840 2.9e-125 452.6 317 71.3
Ah.05g174550 Amaranthus hybridus HOM05D004324 ORTHO05D004840 6.4e-125 451.4 349 63.9
Lj7A531T56 Lonicera japonica HOM05D004324 ORTHO05D004840 4.0e-119 432.2 313 69.3
Psat7g231720 Pisum sativum HOM05D004324 ORTHO05D004840 1.1e-113 414.1 316 65.2
SEGI_04392 Sequoiadendron giganteum HOM05D004324 ORTHO05D004840 2.1e-104 383.3 250 76.4
MELO3C022492.2 Cucumis melo HOM05D004324 ORTHO05D004840 1.2e-102 377.5 238 76.9
COL.COLO4_24608 Corchorus olitorius HOM05D004324 ORTHO05D004840 1.9e-97 360.1 313 58.8
Hma1.2p1_0375F.1_g138670 Hydrangea macrophylla HOM05D004324 ORTHO05D004840 1.3e-96 357.5 250 70.4
Sed0023731 Sechium edule HOM05D004324 ORTHO05D004840 2.9e-93 346.3 227 72.7
Dinv43690 Davidia involucrata HOM05D004324 ORTHO05D004840 5.4e-92 342.0 313 57.8
Zm00001eb418690 Zea mays HOM05D004324 ORTHO05D004840 1.3e-90 337.4 207 79.2
Atru.chr5.284 Acer truncatum HOM05D004324 ORTHO05D004840 8.7e-90 334.7 227 72.2
arahy.Tifrunner.gnm1.ann1.J17N2W Arachis hypogaea HOM05D004324 ORTHO05D004840 1.5e-89 334.0 286 61.5
Psat6g218040 Pisum sativum HOM05D004324 ORTHO05D004840 1.6e-88 330.5 314 56.4
AagrBONN_evm.TU.Sc2ySwM_368.1743 Anthoceros agrestis HOM05D004324 ORTHO05D004840 3.1e-87 326.2 189 84.7
Medtr4g024940 Medicago truncatula HOM05D004324 ORTHO05D004840 3.2e-84 316.2 206 74.3
MBI04_g35670_MAGBIO Magnolia biondii HOM05D004324 ORTHO05D004840 6.0e-83 312.0 195 76.9
FvH4_7g11450 Fragaria vesca HOM05D004324 ORTHO05D004840 2.5e-81 306.6 190 76.3
AL6G42680 Arabidopsis lyrata HOM05D004324 ORTHO05D004840 7.4e-81 305.1 192 76.6
Medtr0088s0100 Medicago truncatula HOM05D004324 ORTHO05D004840 4.8e-80 302.4 318 52.8
SGA_v2.0_scaffold11G05569 Striga asiatica HOM05D004324 ORTHO05D004840 3.8e-77 292.7 241 64.3
Psat6g218080 Pisum sativum HOM05D004324 ORTHO05D004840 5.9e-70 268.9 194 67.0
Gohir.A05G252532 Gossypium hirsutum HOM05D004324 ORTHO05D004840 1.9e-68 263.8 167 74.9
Sc26g0001270 Simmondsia chinensis HOM05D004324 ORTHO05D004840 2.6e-62 243.4 171 70.8
Gohir.A05G252466 Gossypium hirsutum HOM05D004324 ORTHO05D004840 3.8e-53 213.0 134 77.6
Psat6g217960 Pisum sativum HOM05D004324 ORTHO05D004840 9.7e-49 198.4 154 64.3
RcHm_v2.0_Chr1g0349761 Rosa chinensis HOM05D004324 ORTHO05D004840 1.6e-43 181.0 119 71.4
AL6G42730 Arabidopsis lyrata HOM05D004324 ORTHO05D004840 2.8e-40 170.2 131 63.4
CDE02G4314 Ceratophyllum demersum HOM05D004324 ORTHO05D004840 1.1e-39 168.3 147 61.2
arahy.Tifrunner.gnm1.ann1.V33WN8 Arachis hypogaea HOM05D004324 ORTHO05D004840 1.6e-35 154.5 85 85.9
Duzib177G0443 Durio zibethinus HOM05D004324 ORTHO05D004840 5.4e-31 139.4 84 81.0
MD02G1206600 Malus domestica HOM05D004324 ORTHO05D004840 8.6e-29 132.1 96 68.8
SEGI_10460 Sequoiadendron giganteum HOM05D004324 ORTHO05D004840 9.5e-28 128.6 78 78.2
CAN.G112.16 Capsicum annuum HOM05D004324 ORTHO05D004840 1.2e-27 128.3 82 70.7
CAN.G23.23 Capsicum annuum HOM05D004324 ORTHO05D004840 2.8e-27 127.1 78 74.4
MD02G1206500 Malus domestica HOM05D004324 ORTHO05D004840 2.3e-26 124.0 71 78.9
Actinidia02863 Actinidia chinensis HOM05D004324 ORTHO05D004840 9.8e-25 118.6 77 70.1
MCO07G634 Micromonas commoda HOM05D004324 ORTHO05D004840 3.6e-19 100.1 291 29.2
Sc26g0001260 Simmondsia chinensis HOM05D004324 ORTHO05D004840 4.9e-16 89.7 126 44.4
Cfa025533 Carpinus fangiana HOM05D000146 ORTHO05D004840 8.3e-16 89.0 320 25.6
Pp3s30_709 Physcomitrium patens HOM05D004324 ORTHO05D004840 3.2e-15 87.0 245 26.5
Prupe.7G087800 Prunus persica HOM05D004324 ORTHO05D004840 3.2e-15 87.0 123 48.0
Duzib106G1980 Durio zibethinus HOM05D004324 ORTHO05D004840 2.7e-14 84.0 67 61.2
Ca_28979_v3 Cicer arietinum L. HOM05D004324 ORTHO05D004840 6.0e-14 82.8 187 30.5
Cfa023222 Carpinus fangiana HOM05D004324 ORTHO05D004840 8.6e-13 79.0 273 30.0
Psat0s13993g0040 Pisum sativum HOM05D004324 ORTHO05D004840 8.6e-13 79.0 107 45.8
Actinidia02867 Actinidia chinensis HOM05D004324 ORTHO05D004840 8.0e-11 72.4 83 49.4
Cfa024978 Carpinus fangiana HOM05D004324 ORTHO05D034102 2.3e-10 70.9 211 28.0
Actinidia31395 Actinidia chinensis HOM05D004324 ORTHO05D004840 2.9e-08 63.9 52 55.8
Actinidia02866 Actinidia chinensis HOM05D004324 ORTHO05D004840 3.7e-08 63.5 103 40.8
Prupe.2G076400 Prunus persica HOM05D004324 ORTHO05D004840 3.2e-07 60.5 52 63.5


User provided reference genes

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