Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c5_19450 Physcomitrium patens HOM05D005376 ORTHO05D006481 7.9e-161 570.5 304 100.0
Pp3c5_19453 Physcomitrium patens HOM05D005376 ORTHO05D006481 7.9e-161 570.5 304 100.0
Pp3c16_8830 Physcomitrium patens HOM05D005376 ORTHO05D006481 1.6e-65 253.8 302 56.0
Mapoly0083s0037 Marchantia polymorpha HOM05D005376 ORTHO05D006481 7.2e-37 158.7 236 46.6
SEGI_07365 Sequoiadendron giganteum HOM05D005376 ORTHO05D006481 1.0e-30 138.3 172 51.7
Potri.012G144300 Populus trichocarpa HOM05D005376 ORTHO05D006481 1.4e-29 134.4 204 50.0
AagrBONN_evm.TU.Sc2ySwM_117.3925 Anthoceros agrestis HOM05D005376 ORTHO05D006481 2.5e-29 133.7 98 75.5
MCO14G251 Micromonas commoda HOM05D005376 ORTHO05D006481 2.5e-29 133.7 173 50.9
CSS0038684 Camellia sinensis var. sinensis HOM05D005376 ORTHO05D006481 4.2e-29 132.9 187 48.1
PGR142G2432 Punica granatum HOM05D005376 ORTHO05D006481 2.7e-28 130.2 204 47.1
Thhalv10014513m.g Eutrema salsugineum HOM05D005376 ORTHO05D006481 3.6e-28 129.8 187 48.7
Lj5g0000296 Lotus japonicus HOM05D005376 ORTHO05D006481 3.6e-28 129.8 187 47.6
Actinidia20875 Actinidia chinensis HOM05D005376 ORTHO05D006481 6.1e-28 129.0 148 53.4
A03p15670 Brassica napus HOM05D005376 ORTHO05D006481 1.0e-27 128.3 183 50.8
Migut.F01097 Erythranthe guttata HOM05D005376 ORTHO05D006481 1.0e-27 128.3 162 48.8
BraA02t06246Z Brassica rapa HOM05D005376 ORTHO05D006481 1.4e-27 127.9 174 51.1
Cpa.g.sc107.83 Carica papaya HOM05D005376 ORTHO05D006481 2.3e-27 127.1 171 52.0
DCAR_009379 Daucus carota HOM05D005376 ORTHO05D006481 2.3e-27 127.1 149 51.0
Zm00001eb085050 Zea mays HOM05D005376 ORTHO05D006481 2.3e-27 127.1 207 44.0
Glyma.20G161700 Glycine max HOM05D005376 ORTHO05D006481 6.7e-27 125.6 172 51.7
Potri.015G147100 Populus trichocarpa HOM05D005376 ORTHO05D006481 6.7e-27 125.6 226 43.4
CiPaw.06G001100 Carya illinoinensis HOM05D005376 ORTHO05D006481 8.8e-27 125.2 146 52.7
BcaB05g21960 Brassica carinata HOM05D005376 ORTHO05D006481 1.1e-26 124.8 184 44.6
A02p11810 Brassica napus HOM05D005376 ORTHO05D006481 1.1e-26 124.8 192 44.8
C02p19650 Brassica napus HOM05D005376 ORTHO05D006481 1.1e-26 124.8 155 49.7
BolC2t08101H Brassica oleracea HOM05D005376 ORTHO05D006481 1.1e-26 124.8 184 45.1
ATR0680G109 Amborella trichopoda HOM05D005376 ORTHO05D006481 2.0e-26 124.0 167 46.7
BcaB01g04203 Brassica carinata HOM05D005376 ORTHO05D006481 2.0e-26 124.0 171 51.5
HanXRQChr09g0252451 Helianthus annuus HOM05D005376 ORTHO05D006481 2.5e-26 123.6 108 67.6
QL09p013410 Quercus lobata HOM05D005376 ORTHO05D006481 2.5e-26 123.6 155 51.6
AL8G26870 Arabidopsis lyrata HOM05D005376 ORTHO05D006481 3.3e-26 123.2 157 52.2
BcaC03g14530 Brassica carinata HOM05D005376 ORTHO05D006481 3.3e-26 123.2 188 45.7
Dinv35232 Davidia involucrata HOM05D005376 ORTHO05D006481 3.3e-26 123.2 158 52.5
Sed0004337 Sechium edule HOM05D005376 ORTHO05D006481 3.3e-26 123.2 270 39.3
BcaC01g06187 Brassica carinata HOM05D005376 ORTHO05D006481 4.3e-26 122.9 186 48.4
Duzib084G0056 Durio zibethinus HOM05D005376 ORTHO05D006481 4.3e-26 122.9 162 50.6
Os11g0580800 Oryza sativa ssp. japonica HOM05D005376 ORTHO05D006481 4.3e-26 122.9 139 53.2
Gohir.D09G043122 Gossypium hirsutum HOM05D005376 ORTHO05D006481 5.7e-26 122.5 181 47.0
Lalb_Chr06g0161271 Lupinus albus HOM05D005376 ORTHO05D006481 7.4e-26 122.1 177 50.8
THA.LOC104825106 Tarenaya hassleriana HOM05D005376 ORTHO05D006481 7.4e-26 122.1 186 46.8
VMungo0720G1970 Vigna mungo HOM05D005376 ORTHO05D006481 7.4e-26 122.1 152 51.3
Gohir.A09G042000 Gossypium hirsutum HOM05D005376 ORTHO05D006481 9.7e-26 121.7 149 51.7
Manes.14G024100 Manihot esculenta HOM05D005376 ORTHO05D006481 9.7e-26 121.7 159 51.6
Atru.chr1.400 Acer truncatum HOM05D005376 ORTHO05D006481 1.7e-25 120.9 150 49.3
Aa31LG3G8830 Aethionema arabicum HOM05D005376 ORTHO05D006481 1.7e-25 120.9 138 53.6
Aqoxy7G00281 Aquilegia oxysepala HOM05D005376 ORTHO05D006481 1.7e-25 120.9 151 50.3
CsaV3_3G017320 Cucumis sativus L. HOM05D005376 ORTHO05D006481 1.7e-25 120.9 175 50.3
Glyma.10G232400 Glycine max HOM05D005376 ORTHO05D006481 1.7e-25 120.9 173 48.6
arahy.Tifrunner.gnm1.ann1.20ERFR Arachis hypogaea HOM05D005376 ORTHO05D006481 2.2e-25 120.6 126 60.3
C03p18310 Brassica napus HOM05D005376 ORTHO05D006481 2.8e-25 120.2 259 40.5
BolC3t14229H Brassica oleracea HOM05D005376 ORTHO05D006481 2.8e-25 120.2 259 40.5
BraA03t10859Z Brassica rapa HOM05D005376 ORTHO05D006481 2.8e-25 120.2 270 41.9
Cfa016268 Carpinus fangiana HOM05D005376 ORTHO05D006481 2.8e-25 120.2 164 51.2
Oeu004115.1 Olea europaea HOM05D005376 ORTHO05D006481 2.8e-25 120.2 135 54.8
Duzib205G1046 Durio zibethinus HOM05D005376 ORTHO05D006481 3.7e-25 119.8 146 52.7
arahy.Tifrunner.gnm1.ann1.QSSI4A Arachis hypogaea HOM05D005376 ORTHO05D006481 4.8e-25 119.4 126 60.3
Carub.0008s1254 Capsella rubella HOM05D005376 ORTHO05D006481 4.8e-25 119.4 190 44.2
FAN10G0028 Fragaria x ananassa HOM05D005376 ORTHO05D006481 4.8e-25 119.4 181 47.0
FAN01G1606 Fragaria x ananassa HOM05D005376 ORTHO05D006481 6.3e-25 119.0 155 51.0
FAN10G2308 Fragaria x ananassa HOM05D005376 ORTHO05D006481 8.2e-25 118.6 182 47.3
CDE09G0642 Ceratophyllum demersum HOM05D005376 ORTHO05D006481 1.1e-24 118.2 150 52.7
FvH4_7g29980 Fragaria vesca HOM05D005376 ORTHO05D006481 1.1e-24 118.2 186 46.2
FAN06G2500 Fragaria x ananassa HOM05D005376 ORTHO05D006481 1.1e-24 118.2 186 46.2
FAN06G2733 Fragaria x ananassa HOM05D005376 ORTHO05D006481 1.1e-24 118.2 186 46.2
MSTRG.27099 Avicennia marina HOM05D005376 ORTHO05D006481 1.4e-24 117.9 146 52.1
Ciclev10005655m.g Citrus clementina HOM05D005376 ORTHO05D006481 1.4e-24 117.9 185 45.4
Eucgr.K00283 Eucalyptus grandis HOM05D005376 ORTHO05D006481 1.4e-24 117.9 188 46.3
TWI39G0402 Tripterygium wilfordii HOM05D005376 ORTHO05D006481 1.4e-24 117.9 153 49.7
Prupe.2G298400 Prunus persica HOM05D005376 ORTHO05D006481 1.8e-24 117.5 100 71.0
HPP92_014785 Vanilla planifolia HOM05D005376 ORTHO05D006481 1.8e-24 117.5 180 46.1
Phvul.007G073200 Phaseolus vulgaris HOM05D005376 ORTHO05D006481 2.4e-24 117.1 101 70.3
Lsat_1_v5_gn_9_57581 Lactuca sativa HOM05D005376 ORTHO05D006481 3.1e-24 116.7 212 40.6
PSO782G3185 Papaver somniferum HOM05D005376 ORTHO05D006481 3.1e-24 116.7 105 62.9
Sabra12G0108300 Salix brachista HOM05D005376 ORTHO05D006481 3.1e-24 116.7 246 43.1
EL10Ac3g05591 Beta vulgaris HOM05D005376 ORTHO05D006481 4.1e-24 116.3 166 48.8
FAN03G2430 Fragaria x ananassa HOM05D005376 ORTHO05D006481 4.1e-24 116.3 186 45.7
MD07G1276100 Malus domestica HOM05D005376 ORTHO05D006481 4.1e-24 116.3 100 69.0
PSO478G1134 Papaver somniferum HOM05D005376 ORTHO05D006481 4.1e-24 116.3 129 55.8
CARHR265430 Cardamine hirsuta HOM05D005376 ORTHO05D006481 5.3e-24 115.9 213 43.2
AUR62021148 Chenopodium quinoa HOM05D005376 ORTHO05D006481 5.3e-24 115.9 146 50.7
ECA233G3491 Erigeron canadensis HOM05D005376 ORTHO05D006481 5.3e-24 115.9 135 53.3
Rhsim03G0188900 Rhododendron simsii HOM05D005376 ORTHO05D006481 5.3e-24 115.9 155 51.0
RhsimUnG0027200 Rhododendron simsii HOM05D005376 ORTHO05D006481 5.3e-24 115.9 155 51.0
TWI23G0148 Tripterygium wilfordii HOM05D005376 ORTHO05D006481 9.1e-24 115.2 154 48.1
CBR_g49097 Chara braunii HOM05D005376 ORTHO05D006481 1.5e-23 114.4 235 41.3
AUR62031389 Chenopodium quinoa HOM05D005376 ORTHO05D006481 1.5e-23 114.4 168 49.4
FAN03G2197 Fragaria x ananassa HOM05D005376 ORTHO05D006481 1.5e-23 114.4 186 45.7
Zm00001eb421330 Zea mays HOM05D005376 ORTHO05D006481 1.5e-23 114.4 203 41.9
Gorai.006G049600 Gossypium raimondii HOM05D005376 ORTHO05D006481 2.0e-23 114.0 190 44.7
Nn1g01558 Nelumbo nucifera HOM05D005376 ORTHO05D006481 2.0e-23 114.0 229 42.8
CANSAT21G2457 Cannabis sativa HOM05D005376 ORTHO05D006481 2.6e-23 113.6 188 45.7
Migut.F00319 Erythranthe guttata HOM05D005376 ORTHO05D006481 2.6e-23 113.6 196 40.3
Lsat_1_v5_gn_8_6901 Lactuca sativa HOM05D005376 ORTHO05D006481 3.4e-23 113.2 123 58.5
AT5G52440 Arabidopsis thaliana HOM05D005376 ORTHO05D006481 4.5e-23 112.8 200 41.0
Sp6g14660 Schrenkiella parvula HOM05D005376 ORTHO05D006481 4.5e-23 112.8 188 44.7
MELO3C006928.2 Cucumis melo HOM05D005376 ORTHO05D006481 1.0e-22 111.7 275 39.3
MBI17_g35259_MAGBIO Magnolia biondii HOM05D005376 ORTHO05D006481 1.0e-22 111.7 70 82.9
SalBow4G0945 Salvia bowleyana HOM05D005376 ORTHO05D006481 1.7e-22 110.9 159 46.5
SMO223G0008 Selaginella moellendorffii HOM05D005376 ORTHO05D006481 1.7e-22 110.9 71 78.9
SGA_v2.0_scaffold44G16739 Striga asiatica HOM05D005376 ORTHO05D006481 1.7e-22 110.9 152 48.0
ClCG05G008230 Citrullus lanatus HOM05D005376 ORTHO05D006481 2.2e-22 110.5 196 43.4
Cc02_g02590 Coffea canephora HOM05D005376 ORTHO05D006481 3.8e-22 109.8 158 44.3
RcHm_v2.0_Chr1g0377931 Rosa chinensis HOM05D005376 ORTHO05D006481 3.8e-22 109.8 124 59.7
Ah.13g068730 Amaranthus hybridus HOM05D005376 ORTHO05D006481 6.5e-22 109.0 158 48.7
Oeu022600.1 Olea europaea HOM05D005376 ORTHO05D006481 8.5e-22 108.6 250 38.0
Hund04774 Selenicereus undatus HOM05D005376 ORTHO05D006481 1.4e-21 107.8 176 45.5
Actinidia34140 Actinidia chinensis HOM05D005376 ORTHO05D006481 2.5e-21 107.1 148 46.6
Manes.06G150900 Manihot esculenta HOM05D005376 ORTHO05D006481 2.5e-21 107.1 141 52.5
Haze_00025 Corylus avellana HOM05D005376 ORTHO05D006481 4.2e-21 106.3 178 43.8
Hma1.2p1_0227F.1_g096040 Hydrangea macrophylla HOM05D005376 ORTHO05D006481 7.2e-21 105.5 152 46.1
GSVIVG01028894001 Vitis vinifera HOM05D005376 ORTHO05D006481 1.2e-20 104.8 152 48.7
Nitab4.5_0001625g0010 Nicotiana tabacum HOM05D005376 ORTHO05D006481 2.7e-20 103.6 135 49.6
COL.COLO4_28026 Corchorus olitorius HOM05D005376 ORTHO05D006481 4.7e-20 102.8 146 45.9
Sc19g0001360 Simmondsia chinensis HOM05D005376 ORTHO05D006481 6.1e-20 102.4 166 47.0
ECA232G4406 Erigeron canadensis HOM05D005376 ORTHO05D006481 1.8e-19 100.9 90 66.7
PGSC0003DMG400010161 Solanum tuberosum HOM05D005376 ORTHO05D006481 3.0e-19 100.1 205 39.5
Ca_10737_v3 Cicer arietinum L. HOM05D004749 ORTHO05D005995 5.1e-19 99.4 205 41.5
Medtr1g100220 Medicago truncatula HOM05D005376 ORTHO05D006481 5.1e-19 99.4 174 42.0
Psat6g193680 Pisum sativum HOM05D005376 ORTHO05D006481 6.7e-19 99.0 155 43.2
Thecc.03G181600 Theobroma cacao HOM05D005376 ORTHO05D006481 2.0e-18 97.4 159 46.5
Nitab4.5_0000084g0270 Nicotiana tabacum HOM05D005376 ORTHO05D006481 7.4e-18 95.5 263 35.4
Sopen03g004140 Solanum pennellii HOM05D005376 ORTHO05D006481 1.3e-17 94.7 215 37.7
PRCOL_00002629 Prasinoderma coloniale HOM05D005376 ORTHO05D006481 1.7e-17 94.4 179 39.1
Solyc03g025310.3 Solanum lycopersicum HOM05D005376 ORTHO05D006481 1.7e-17 94.4 162 45.1
TPR.G27004 Trifolium pratense HOM05D004749 ORTHO05D005995 1.7e-17 94.4 206 39.3
Cre08.g371650 Chlamydomonas reinhardtii HOM05D005376 ORTHO05D006481 1.1e-16 91.7 118 48.3
TAR636G3226 Trochodendron aralioides HOM05D005376 ORTHO05D006481 1.8e-16 90.9 177 41.2
CAN.G236.14 Capsicum annuum HOM05D005376 ORTHO05D006481 9.1e-16 88.6 210 37.1
HPP92_028097 Vanilla planifolia HOM05D005376 ORTHO05D006481 2.6e-15 87.0 56 80.4
Hma1.2p1_0044F.1_g025970 Hydrangea macrophylla HOM05D005376 ORTHO05D006481 6.1e-12 75.9 119 42.0
Hund11730 Selenicereus undatus HOM05D005376 ORTHO05D006481 1.1e-10 71.6 155 39.4
Lalb_Chr02g0141171 Lupinus albus HOM05D005376 ORTHO05D006481 6.3e-09 65.9 71 53.5
Hma1.2p1_0299F.1_g117880 Hydrangea macrophylla HOM05D005376 ORTHO05D006481 2.7e-07 60.5 101 38.6
Ah.04g162340 Amaranthus hybridus HOM05D004404 ORTHO05D005070 4.5e-07 59.7 97 40.2
Nitab4.5_0008996g0030 Nicotiana tabacum HOM05D004404 ORTHO05D005070 2.2e-06 57.4 106 40.6
CAN.G134.95 Capsicum annuum HOM05D004404 ORTHO05D005070 3.8e-06 56.6 106 41.5
THA.LOC104805820 Tarenaya hassleriana HOM05D004404 ORTHO05D005070 3.8e-06 56.6 91 41.8
Peaxi162Scf00057g10027 Petunia axillaris HOM05D005376 ORTHO05D006481 5.0e-06 56.2 66 53.0
DCAR_006653 Daucus carota HOM05D004404 ORTHO05D005070 6.5e-06 55.8 104 39.4
Lsat_1_v5_gn_5_40280 Lactuca sativa HOM05D004404 ORTHO05D005070 8.5e-06 55.5 117 34.2


User provided reference genes

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